Wall clock time and date at job start Mon Mar 30 2020 01:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47336 * 2 1 4 4 C 1.53008 * 109.47046 * 119.99608 * 2 1 3 5 5 C 1.53001 * 109.47504 * 239.99507 * 2 1 3 6 6 C 1.50701 * 110.45564 * 60.63396 * 5 2 1 7 7 H 1.08007 * 119.99579 * 0.02562 * 6 5 2 8 8 C 1.37871 * 120.00296 * 180.02562 * 6 5 2 9 9 N 1.31519 * 119.99664 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00372 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46817 * 59.99892 * 10 8 6 12 12 H 1.48502 * 109.47307 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.46892 * 300.00256 * 10 8 6 14 14 C 1.54509 * 110.51162 * 183.23718 * 5 2 1 15 15 C 1.54482 * 104.06185 * 118.64796 * 14 5 2 16 16 O 1.44426 * 104.79957 * 23.97649 * 15 14 5 17 17 C 1.44643 * 105.37176 * 319.56554 * 16 15 14 18 18 H 1.09004 * 109.47493 * 180.02562 * 1 2 3 19 19 H 1.09008 * 109.47119 * 60.00177 * 1 2 3 20 20 H 1.09001 * 109.47675 * 300.00654 * 1 2 3 21 21 H 1.08993 * 109.47304 * 59.99373 * 3 2 1 22 22 H 1.09005 * 109.47361 * 179.97438 * 3 2 1 23 23 H 1.09008 * 109.46872 * 299.99974 * 3 2 1 24 24 H 1.08997 * 109.46621 * 53.78927 * 4 2 1 25 25 H 1.08998 * 109.47182 * 173.79154 * 4 2 1 26 26 H 1.08999 * 109.46861 * 293.78907 * 4 2 1 27 27 H 0.97002 * 119.99743 * 179.97438 * 9 8 6 28 28 H 1.09000 * 110.51127 * 237.29225 * 14 5 2 29 29 H 1.08998 * 110.51616 * 0.02562 * 14 5 2 30 30 H 1.09001 * 110.37273 * 142.80913 * 15 14 5 31 31 H 1.09003 * 110.36819 * 265.03635 * 15 14 5 32 32 H 1.08999 * 110.33892 * 281.59113 * 17 16 15 33 33 H 1.09007 * 110.50700 * 159.18880 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 2.0400 -0.7213 -1.2492 6 6 1.5628 -0.0195 -2.4944 7 1 0.9488 0.8655 -2.4138 8 6 1.9099 -0.5069 -3.7365 9 7 2.6580 -1.5842 -3.8346 10 14 1.3178 0.3627 -5.2801 11 1 1.8255 1.7582 -5.2876 12 1 1.8247 -0.3544 -6.4776 13 1 -0.1670 0.3760 -5.3020 14 6 3.5827 -0.8065 -1.2332 15 6 3.8748 -2.3234 -1.2232 16 8 2.6975 -2.9296 -1.7997 17 6 1.5794 -2.1958 -1.2487 18 1 -0.3634 -1.0277 0.0005 19 1 -0.3634 0.5138 -0.8901 20 1 -0.3634 0.5139 0.8899 21 1 1.6766 1.9564 0.8899 22 1 3.1300 1.4425 0.0005 23 1 1.6766 1.9564 -0.8901 24 1 1.5886 -1.7117 1.3067 25 1 3.1242 -0.8185 1.1956 26 1 1.7702 -0.1471 2.1358 27 1 2.9019 -1.9273 -4.7084 28 1 4.0000 -0.3430 -2.1271 29 1 3.9820 -0.3351 -0.3352 30 1 4.7521 -2.5449 -1.8310 31 1 4.0231 -2.6745 -0.2019 32 1 1.3723 -2.5284 -0.2316 33 1 0.6963 -2.3177 -1.8759 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261114040.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:45 Heat of formation + Delta-G solvation = -48.661995 kcal Electronic energy + Delta-G solvation = -14177.374417 eV Core-core repulsion = 12010.196217 eV Total energy + Delta-G solvation = -2167.178200 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.90675 -35.23464 -32.36832 -29.31685 -27.85988 -26.87984 -26.11195 -24.08733 -21.35641 -20.46993 -17.50415 -15.92639 -15.34518 -14.33513 -14.15871 -13.67794 -13.16041 -12.78797 -12.69870 -11.94761 -11.70684 -11.57230 -11.24140 -10.90489 -10.71815 -10.68139 -10.47545 -10.37423 -10.09147 -10.01268 -9.58175 -9.21459 -8.77222 -8.64301 -8.28517 -7.88751 -5.75536 -3.89534 3.37013 3.42800 3.44791 4.52262 5.37408 5.58737 5.76019 5.82796 5.88299 6.27074 6.29042 6.32907 6.44494 6.51649 6.53617 6.56977 6.60988 6.65206 6.79385 6.86132 7.05179 7.09734 7.17580 7.24443 7.29492 7.42776 7.62583 7.86507 8.03670 8.47729 8.60212 9.08095 9.71917 11.20827 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.033698 B = 0.018047 C = 0.014129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.707616 B = 1551.129317 C = 1981.229016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.054 4.054 3 C -0.127 4.127 4 C -0.145 4.145 5 C 0.062 3.938 6 C -0.517 4.517 7 H 0.056 0.944 8 C 0.066 3.934 9 N -0.842 5.842 10 Si 0.877 3.123 11 H -0.280 1.280 12 H -0.290 1.290 13 H -0.280 1.280 14 C -0.125 4.125 15 C 0.068 3.932 16 O -0.340 6.340 17 C 0.069 3.931 18 H 0.045 0.955 19 H 0.062 0.938 20 H 0.030 0.970 21 H 0.029 0.971 22 H 0.046 0.954 23 H 0.061 0.939 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.038 0.962 27 H 0.255 0.745 28 H 0.071 0.929 29 H 0.034 0.966 30 H 0.061 0.939 31 H 0.015 0.985 32 H 0.014 0.986 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.355 1.710 6.398 6.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.054 4.054 3 C -0.184 4.184 4 C -0.202 4.202 5 C 0.062 3.938 6 C -0.555 4.555 7 H 0.074 0.926 8 C -0.139 4.139 9 N -0.477 5.477 10 Si 0.705 3.295 11 H -0.206 1.206 12 H -0.216 1.216 13 H -0.206 1.206 14 C -0.163 4.163 15 C -0.010 4.010 16 O -0.258 6.258 17 C -0.008 4.008 18 H 0.064 0.936 19 H 0.081 0.919 20 H 0.049 0.951 21 H 0.048 0.952 22 H 0.065 0.935 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.033 0.967 32 H 0.031 0.969 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.263 1.379 6.093 6.253 hybrid contribution -0.251 0.605 -0.846 1.071 sum -0.515 1.985 5.247 5.633 Atomic orbital electron populations 1.21766 0.95796 1.00762 1.00247 1.20454 0.94742 0.95153 0.95063 1.21768 1.00314 0.96217 1.00106 1.22052 1.01031 0.99894 0.97263 1.19371 0.90918 0.91785 0.91774 1.20842 1.33188 1.11966 0.89454 0.92551 1.25045 0.95399 0.94917 0.98499 1.70248 1.34377 1.20003 1.23053 0.86925 0.79078 0.79761 0.83690 1.20629 1.21613 1.20567 1.22921 0.99167 0.94998 0.99244 1.22850 0.90433 0.93876 0.93842 1.89124 1.13791 1.54971 1.67877 1.23497 0.90742 0.93075 0.93504 0.93620 0.91901 0.95070 0.95205 0.93497 0.91952 0.93147 0.92879 0.94323 0.93459 0.91010 0.94714 0.92112 0.96689 0.96862 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 8.04 37.15 0.30 -2.10 16 2 C -0.05 -1.06 0.30 -154.51 -0.05 -1.11 16 3 C -0.13 -2.37 8.01 37.16 0.30 -2.07 16 4 C -0.15 -2.55 7.88 37.16 0.29 -2.26 16 5 C 0.06 1.44 0.13 -154.09 -0.02 1.42 16 6 C -0.52 -13.35 6.49 -34.44 -0.22 -13.57 16 7 H 0.06 1.45 5.83 -52.48 -0.31 1.15 16 8 C 0.07 1.78 4.90 -17.82 -0.09 1.70 16 9 N -0.84 -23.50 9.10 55.43 0.50 -22.99 16 10 Si 0.88 21.04 29.54 -169.99 -5.02 16.02 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 C -0.13 -2.88 4.54 -25.16 -0.11 -2.99 16 15 C 0.07 1.54 7.29 37.94 0.28 1.82 16 16 O -0.34 -8.80 9.44 -35.23 -0.33 -9.13 16 17 C 0.07 1.66 4.99 37.93 0.19 1.85 16 18 H 0.04 0.84 7.24 -51.93 -0.38 0.47 16 19 H 0.06 1.25 6.74 -51.92 -0.35 0.90 16 20 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 21 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.05 0.87 6.73 -51.93 -0.35 0.52 16 23 H 0.06 1.24 6.66 -51.92 -0.35 0.90 16 24 H 0.05 0.88 6.29 -51.93 -0.33 0.55 16 25 H 0.05 0.93 6.14 -51.93 -0.32 0.61 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.07 1.84 6.99 -51.93 -0.36 1.48 16 29 H 0.03 0.72 5.16 -51.93 -0.27 0.45 16 30 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.01 0.30 5.65 -51.93 -0.29 0.00 16 33 H 0.07 1.76 7.86 -51.93 -0.41 1.35 16 LS Contribution 242.26 15.07 3.65 3.65 Total: -1.00 -27.51 242.26 -5.29 -32.80 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -4.95 Total: -3.02 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: 0.86 Total: -17.32 kcal Atomic # 7 Polarization: -23.50 SS G_CDS: 0.50 Total: -22.99 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -0.33 Total: -9.13 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -27.51 -5.29 -32.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261114040.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.861 kcal (2) G-P(sol) polarization free energy of solvation -27.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds