Wall clock time and date at job start Mon Mar 30 2020 01:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47336 * 2 1 4 4 C 1.53008 * 109.47046 * 119.99608 * 2 1 3 5 5 C 1.53001 * 109.47504 * 239.99507 * 2 1 3 6 6 C 1.50701 * 110.45564 * 60.63396 * 5 2 1 7 7 H 1.08007 * 119.99579 * 0.02562 * 6 5 2 8 8 C 1.37871 * 120.00296 * 180.02562 * 6 5 2 9 9 N 1.31519 * 119.99664 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00372 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46817 * 59.99892 * 10 8 6 12 12 H 1.48502 * 109.47307 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.46892 * 300.00256 * 10 8 6 14 14 C 1.54509 * 110.51162 * 183.23718 * 5 2 1 15 15 C 1.54482 * 104.06185 * 118.64796 * 14 5 2 16 16 O 1.44426 * 104.79957 * 23.97649 * 15 14 5 17 17 C 1.44643 * 105.37176 * 319.56554 * 16 15 14 18 18 H 1.09004 * 109.47493 * 180.02562 * 1 2 3 19 19 H 1.09008 * 109.47119 * 60.00177 * 1 2 3 20 20 H 1.09001 * 109.47675 * 300.00654 * 1 2 3 21 21 H 1.08993 * 109.47304 * 59.99373 * 3 2 1 22 22 H 1.09005 * 109.47361 * 179.97438 * 3 2 1 23 23 H 1.09008 * 109.46872 * 299.99974 * 3 2 1 24 24 H 1.08997 * 109.46621 * 53.78927 * 4 2 1 25 25 H 1.08998 * 109.47182 * 173.79154 * 4 2 1 26 26 H 1.08999 * 109.46861 * 293.78907 * 4 2 1 27 27 H 0.97002 * 119.99743 * 179.97438 * 9 8 6 28 28 H 1.09000 * 110.51127 * 237.29225 * 14 5 2 29 29 H 1.08998 * 110.51616 * 0.02562 * 14 5 2 30 30 H 1.09001 * 110.37273 * 142.80913 * 15 14 5 31 31 H 1.09003 * 110.36819 * 265.03635 * 15 14 5 32 32 H 1.08999 * 110.33892 * 281.59113 * 17 16 15 33 33 H 1.09007 * 110.50700 * 159.18880 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 2.0400 -0.7213 -1.2492 6 6 1.5628 -0.0195 -2.4944 7 1 0.9488 0.8655 -2.4138 8 6 1.9099 -0.5069 -3.7365 9 7 2.6580 -1.5842 -3.8346 10 14 1.3178 0.3627 -5.2801 11 1 1.8255 1.7582 -5.2876 12 1 1.8247 -0.3544 -6.4776 13 1 -0.1670 0.3760 -5.3020 14 6 3.5827 -0.8065 -1.2332 15 6 3.8748 -2.3234 -1.2232 16 8 2.6975 -2.9296 -1.7997 17 6 1.5794 -2.1958 -1.2487 18 1 -0.3634 -1.0277 0.0005 19 1 -0.3634 0.5138 -0.8901 20 1 -0.3634 0.5139 0.8899 21 1 1.6766 1.9564 0.8899 22 1 3.1300 1.4425 0.0005 23 1 1.6766 1.9564 -0.8901 24 1 1.5886 -1.7117 1.3067 25 1 3.1242 -0.8185 1.1956 26 1 1.7702 -0.1471 2.1358 27 1 2.9019 -1.9273 -4.7084 28 1 4.0000 -0.3430 -2.1271 29 1 3.9820 -0.3351 -0.3352 30 1 4.7521 -2.5449 -1.8310 31 1 4.0231 -2.6745 -0.2019 32 1 1.3723 -2.5284 -0.2316 33 1 0.6963 -2.3177 -1.8759 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261114040.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:44 Heat of formation + Delta-G solvation = -64.527419 kcal Electronic energy + Delta-G solvation = -14178.062393 eV Core-core repulsion = 12010.196217 eV Total energy + Delta-G solvation = -2167.866177 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.67277 -36.94869 -34.36578 -31.15308 -29.67138 -28.39500 -27.64372 -26.00579 -23.17650 -22.22737 -19.26634 -17.83534 -17.11226 -16.20621 -16.05969 -15.48245 -14.76882 -14.53502 -14.32144 -13.65704 -13.51297 -13.07720 -12.80174 -12.71924 -12.53389 -12.32084 -12.27391 -12.08003 -11.90806 -11.67807 -11.33575 -10.94300 -10.56079 -10.47191 -10.26003 -9.77555 -7.80834 -5.97019 1.43402 1.45617 1.50276 2.52274 3.34511 3.76728 4.23907 4.29876 4.37087 4.52472 4.66486 4.73557 4.80079 4.94062 4.97229 5.01140 5.11276 5.16947 5.20083 5.25975 5.35251 5.44744 5.47338 5.55355 5.69365 5.72167 5.84304 5.99072 6.07323 6.57808 6.67473 7.08719 7.65595 9.13184 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.033698 B = 0.018047 C = 0.014129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.707616 B = 1551.129317 C = 1981.229016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.057 4.057 3 C -0.123 4.123 4 C -0.140 4.140 5 C 0.055 3.945 6 C -0.518 4.518 7 H 0.052 0.948 8 C 0.021 3.979 9 N -0.865 5.865 10 Si 0.927 3.073 11 H -0.277 1.277 12 H -0.295 1.295 13 H -0.279 1.279 14 C -0.118 4.118 15 C 0.067 3.933 16 O -0.371 6.371 17 C 0.073 3.927 18 H 0.041 0.959 19 H 0.042 0.958 20 H 0.060 0.940 21 H 0.058 0.942 22 H 0.044 0.956 23 H 0.041 0.959 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.247 0.753 28 H 0.036 0.964 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.038 0.962 33 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.544 2.375 8.192 8.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.057 4.057 3 C -0.180 4.180 4 C -0.197 4.197 5 C 0.055 3.945 6 C -0.556 4.556 7 H 0.070 0.930 8 C -0.181 4.181 9 N -0.501 5.501 10 Si 0.755 3.245 11 H -0.203 1.203 12 H -0.222 1.222 13 H -0.204 1.204 14 C -0.156 4.156 15 C -0.010 4.010 16 O -0.289 6.289 17 C -0.004 4.004 18 H 0.060 0.940 19 H 0.061 0.939 20 H 0.078 0.922 21 H 0.077 0.923 22 H 0.063 0.937 23 H 0.060 0.940 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.459 2.060 7.893 8.170 hybrid contribution -0.207 0.417 -1.381 1.458 sum -0.667 2.477 6.512 6.999 Atomic orbital electron populations 1.21719 0.95167 1.00690 1.00679 1.20470 0.95342 0.95553 0.94381 1.21711 1.00159 0.95612 1.00513 1.21983 1.00869 0.99940 0.96922 1.19431 0.91036 0.91447 0.92634 1.21172 1.32157 1.11588 0.90694 0.92994 1.25618 0.95977 0.95641 1.00874 1.70390 1.35766 1.21220 1.22728 0.86119 0.78511 0.78858 0.80964 1.20295 1.22154 1.20443 1.22787 0.98919 0.95171 0.98702 1.22956 0.89324 0.93576 0.95145 1.89080 1.15061 1.55714 1.69021 1.23435 0.89422 0.93652 0.93867 0.93970 0.93929 0.92150 0.92291 0.93672 0.94037 0.93221 0.92893 0.91607 0.94352 0.94496 0.92190 0.92621 0.93647 0.94399 0.94272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.38 8.04 71.98 0.58 -3.80 16 2 C -0.06 -2.11 0.30 -52.18 -0.02 -2.12 16 3 C -0.12 -4.25 8.01 71.98 0.58 -3.68 16 4 C -0.14 -4.35 7.88 71.98 0.57 -3.78 16 5 C 0.06 2.50 0.13 -51.91 -0.01 2.49 16 6 C -0.52 -26.80 6.49 25.60 0.17 -26.63 16 7 H 0.05 2.68 5.83 -2.91 -0.02 2.67 16 8 C 0.02 1.14 4.90 84.65 0.41 1.55 16 9 N -0.86 -49.15 9.10 21.45 0.20 -48.96 16 10 Si 0.93 43.81 29.54 68.60 2.03 45.84 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 13 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 14 C -0.12 -5.28 4.54 31.61 0.14 -5.14 16 15 C 0.07 2.98 7.29 72.49 0.53 3.50 16 16 O -0.37 -19.08 9.44 -148.98 -1.41 -20.48 16 17 C 0.07 3.48 4.99 72.48 0.36 3.84 16 18 H 0.04 1.47 7.24 -2.39 -0.02 1.45 16 19 H 0.04 1.63 6.74 -2.38 -0.02 1.62 16 20 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 21 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 22 H 0.04 1.55 6.73 -2.38 -0.02 1.53 16 23 H 0.04 1.59 6.66 -2.38 -0.02 1.57 16 24 H 0.05 1.54 6.29 -2.39 -0.02 1.53 16 25 H 0.05 1.64 6.14 -2.39 -0.01 1.62 16 26 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 28 H 0.04 1.89 6.99 -2.39 -0.02 1.87 16 29 H 0.06 2.34 5.16 -2.39 -0.01 2.33 16 30 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.04 1.60 5.65 -2.39 -0.01 1.59 16 33 H 0.04 2.04 7.86 -2.38 -0.02 2.02 16 Total: -1.00 -58.14 242.26 5.21 -52.93 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: 1.08 Total: 4.44 kcal Atomic # 6 Polarization: -37.08 SS G_CDS: 3.31 Total: -33.77 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.20 Total: -48.96 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -1.41 Total: -20.48 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -58.14 5.21 -52.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261114040.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.601 kcal (2) G-P(sol) polarization free energy of solvation -58.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds