Wall clock time and date at job start Mon Mar 30 2020 01:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47020 * 2 1 4 4 C 1.53005 * 109.46508 * 119.99658 * 2 1 3 5 5 C 1.52995 * 109.47409 * 239.99423 * 2 1 3 6 6 C 1.50698 * 110.43902 * 298.91104 * 5 2 1 7 7 H 1.07995 * 120.00265 * 265.53554 * 6 5 2 8 8 C 1.37881 * 120.00016 * 85.53386 * 6 5 2 9 9 N 1.31522 * 119.99983 * 352.77645 * 8 6 5 10 10 Si 1.86796 * 120.00014 * 172.77552 * 8 6 5 11 11 H 1.48500 * 109.47166 * 59.99920 * 10 8 6 12 12 H 1.48504 * 109.47001 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47056 * 299.99711 * 10 8 6 14 14 C 1.54809 * 110.48903 * 176.22263 * 5 2 1 15 15 C 1.54991 * 102.09170 * 220.44757 * 14 5 2 16 16 O 1.44381 * 103.49410 * 37.02475 * 15 14 5 17 17 C 1.43748 * 106.97310 * 319.93751 * 16 15 14 18 18 H 1.09000 * 109.47071 * 60.00763 * 1 2 3 19 19 H 1.09002 * 109.47523 * 300.00416 * 1 2 3 20 20 H 1.09006 * 109.47266 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47047 * 59.99926 * 3 2 1 22 22 H 1.08996 * 109.46927 * 179.97438 * 3 2 1 23 23 H 1.08998 * 109.47266 * 299.99811 * 3 2 1 24 24 H 1.08998 * 109.47179 * 60.00503 * 4 2 1 25 25 H 1.09009 * 109.46784 * 180.02562 * 4 2 1 26 26 H 1.08993 * 109.47258 * 299.99533 * 4 2 1 27 27 H 0.96988 * 119.99675 * 179.97438 * 9 8 6 28 28 H 1.09001 * 110.90655 * 338.64160 * 14 5 2 29 29 H 1.08990 * 110.91049 * 102.24604 * 14 5 2 30 30 H 1.08998 * 110.61995 * 278.52188 * 15 14 5 31 31 H 1.09004 * 110.62116 * 155.52329 * 15 14 5 32 32 H 1.09000 * 109.87698 * 267.09463 * 17 16 15 33 33 H 1.08996 * 110.00056 * 146.00639 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0398 -0.7212 1.2494 5 6 2.0400 -0.7213 -1.2491 6 6 1.5718 -2.1537 -1.2577 7 1 2.2079 -2.9321 -0.8630 8 6 0.3313 -2.4705 -1.7694 9 7 -0.5000 -1.5130 -2.1186 10 14 -0.1685 -4.2595 -1.9669 11 1 -0.1455 -4.9290 -0.6416 12 1 -1.5390 -4.3308 -2.5344 13 1 0.7818 -4.9408 -2.8822 14 6 3.5849 -0.6528 -1.3215 15 6 3.8282 -0.3993 -2.8311 16 8 2.7443 0.4784 -3.2043 17 6 1.5695 0.0076 -2.5227 18 1 -0.3633 0.5137 -0.8901 19 1 -0.3634 0.5139 0.8899 20 1 -0.3634 -1.0277 -0.0005 21 1 1.6766 1.9563 0.8900 22 1 3.1299 1.4425 0.0005 23 1 1.6767 1.9563 -0.8900 24 1 1.6765 -1.7489 1.2494 25 1 3.1299 -0.7209 1.2496 26 1 1.6766 -0.2073 2.1392 27 1 -1.3725 -1.7359 -2.4790 28 1 3.9662 0.1737 -0.7219 29 1 4.0312 -1.5967 -1.0088 30 1 3.7759 -1.3332 -3.3905 31 1 4.7896 0.0900 -2.9881 32 1 1.0209 -0.6827 -3.1635 33 1 0.9319 0.8497 -2.2537 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261114045.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:46 Heat of formation + Delta-G solvation = -49.347298 kcal Electronic energy + Delta-G solvation = -14198.636368 eV Core-core repulsion = 12031.428451 eV Total energy + Delta-G solvation = -2167.207917 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.03180 -35.40511 -32.53696 -30.03385 -27.53440 -26.62761 -25.74749 -24.33993 -21.42651 -20.44052 -17.63770 -16.10626 -15.27386 -14.69563 -14.11723 -13.64732 -13.35497 -12.97718 -12.66246 -11.91915 -11.57744 -11.32468 -11.18487 -10.94198 -10.74773 -10.59127 -10.45627 -10.26927 -10.26625 -9.86992 -9.73766 -9.17852 -8.78197 -8.58668 -8.50384 -7.95409 -6.01988 -4.08798 3.27942 3.33838 3.36534 4.37530 5.19245 5.26403 5.84251 5.94639 6.13756 6.18705 6.23562 6.26434 6.49054 6.61685 6.65645 6.74107 6.77450 6.84835 6.97193 7.00899 7.15189 7.22314 7.25981 7.39480 7.64120 7.67694 7.86967 7.92854 8.10479 8.15659 8.47793 8.92645 9.51135 10.95967 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.032647 B = 0.017867 C = 0.014977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.463359 B = 1566.751749 C = 1869.023555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.050 4.050 3 C -0.144 4.144 4 C -0.124 4.124 5 C 0.059 3.941 6 C -0.497 4.497 7 H 0.056 0.944 8 C 0.061 3.939 9 N -0.876 5.876 10 Si 0.889 3.111 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.278 1.278 14 C -0.151 4.151 15 C 0.056 3.944 16 O -0.413 6.413 17 C 0.065 3.935 18 H 0.058 0.942 19 H 0.000 1.000 20 H 0.076 0.924 21 H 0.033 0.967 22 H 0.044 0.956 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.035 0.965 26 H 0.027 0.973 27 H 0.261 0.739 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.480 1.608 2.342 4.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.051 4.051 3 C -0.201 4.201 4 C -0.181 4.181 5 C 0.058 3.942 6 C -0.536 4.536 7 H 0.074 0.926 8 C -0.140 4.140 9 N -0.515 5.515 10 Si 0.717 3.283 11 H -0.204 1.204 12 H -0.213 1.213 13 H -0.204 1.204 14 C -0.188 4.188 15 C -0.021 4.021 16 O -0.333 6.333 17 C -0.010 4.010 18 H 0.076 0.924 19 H 0.019 0.981 20 H 0.095 0.905 21 H 0.052 0.948 22 H 0.063 0.937 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.054 0.946 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.276 1.807 2.121 4.301 hybrid contribution -0.356 -1.169 0.091 1.225 sum 2.920 0.639 2.212 3.718 Atomic orbital electron populations 1.21807 0.93998 1.03154 0.97571 1.20626 0.96329 0.92129 0.95984 1.22063 0.99944 0.98110 1.00018 1.21715 0.99038 1.01132 0.96227 1.19408 0.88657 0.94973 0.91156 1.21006 1.01034 0.91642 1.39871 0.92574 1.24901 0.96359 0.96963 0.95766 1.70104 1.07733 1.30924 1.42751 0.86705 0.77552 0.85639 0.78419 1.20413 1.21331 1.20415 1.23328 0.99845 1.00113 0.95563 1.23229 0.90133 0.93520 0.95174 1.88671 1.20274 1.53551 1.70794 1.23607 0.84902 0.97606 0.94928 0.92357 0.98051 0.90491 0.94777 0.93693 0.93071 0.92024 0.94570 0.95411 0.92890 0.92506 0.92024 0.93356 0.91865 0.89450 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.47 6.75 37.16 0.25 -2.22 16 2 C -0.05 -1.09 0.32 -154.51 -0.05 -1.14 16 3 C -0.14 -2.84 7.91 37.16 0.29 -2.55 16 4 C -0.12 -2.49 8.04 37.16 0.30 -2.19 16 5 C 0.06 1.36 0.16 -154.13 -0.02 1.34 16 6 C -0.50 -12.57 6.45 -34.44 -0.22 -12.79 16 7 H 0.06 1.43 7.65 -52.49 -0.40 1.03 16 8 C 0.06 1.56 3.88 -17.81 -0.07 1.49 16 9 N -0.88 -22.64 7.54 55.43 0.42 -22.22 16 10 Si 0.89 20.32 29.54 -169.99 -5.02 15.30 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 C -0.15 -3.16 5.08 -24.73 -0.13 -3.29 16 15 C 0.06 1.17 7.72 38.21 0.29 1.46 16 16 O -0.41 -9.79 11.52 -35.23 -0.41 -10.20 16 17 C 0.06 1.60 4.83 37.74 0.18 1.78 16 18 H 0.06 1.40 5.85 -51.93 -0.30 1.10 16 19 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 20 H 0.08 1.92 5.60 -51.93 -0.29 1.63 16 21 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 22 H 0.04 0.84 5.97 -51.93 -0.31 0.53 16 23 H 0.05 1.04 6.48 -51.93 -0.34 0.71 16 24 H 0.06 1.32 7.24 -51.93 -0.38 0.94 16 25 H 0.04 0.68 7.31 -51.92 -0.38 0.30 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 28 H 0.06 1.12 5.53 -51.93 -0.29 0.83 16 29 H 0.06 1.26 7.74 -51.93 -0.40 0.86 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.09 2.38 5.55 -51.93 -0.29 2.10 16 33 H 0.06 1.53 5.05 -51.93 -0.26 1.27 16 LS Contribution 240.07 15.07 3.62 3.62 Total: -1.00 -25.67 240.07 -5.45 -31.12 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -4.89 Total: 0.49 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 0.83 Total: -18.11 kcal Atomic # 7 Polarization: -22.64 SS G_CDS: 0.42 Total: -22.22 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -0.41 Total: -10.20 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -25.67 -5.45 -31.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261114045.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.229 kcal (2) G-P(sol) polarization free energy of solvation -25.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds