Wall clock time and date at job start Mon Mar 30 2020 01:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47020 * 2 1 4 4 C 1.53005 * 109.46508 * 119.99658 * 2 1 3 5 5 C 1.52995 * 109.47409 * 239.99423 * 2 1 3 6 6 C 1.50698 * 110.43902 * 298.91104 * 5 2 1 7 7 H 1.07995 * 120.00265 * 265.53554 * 6 5 2 8 8 C 1.37881 * 120.00016 * 85.53386 * 6 5 2 9 9 N 1.31522 * 119.99983 * 352.77645 * 8 6 5 10 10 Si 1.86796 * 120.00014 * 172.77552 * 8 6 5 11 11 H 1.48500 * 109.47166 * 59.99920 * 10 8 6 12 12 H 1.48504 * 109.47001 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47056 * 299.99711 * 10 8 6 14 14 C 1.54809 * 110.48903 * 176.22263 * 5 2 1 15 15 C 1.54991 * 102.09170 * 220.44757 * 14 5 2 16 16 O 1.44381 * 103.49410 * 37.02475 * 15 14 5 17 17 C 1.43748 * 106.97310 * 319.93751 * 16 15 14 18 18 H 1.09000 * 109.47071 * 60.00763 * 1 2 3 19 19 H 1.09002 * 109.47523 * 300.00416 * 1 2 3 20 20 H 1.09006 * 109.47266 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47047 * 59.99926 * 3 2 1 22 22 H 1.08996 * 109.46927 * 179.97438 * 3 2 1 23 23 H 1.08998 * 109.47266 * 299.99811 * 3 2 1 24 24 H 1.08998 * 109.47179 * 60.00503 * 4 2 1 25 25 H 1.09009 * 109.46784 * 180.02562 * 4 2 1 26 26 H 1.08993 * 109.47258 * 299.99533 * 4 2 1 27 27 H 0.96988 * 119.99675 * 179.97438 * 9 8 6 28 28 H 1.09001 * 110.90655 * 338.64160 * 14 5 2 29 29 H 1.08990 * 110.91049 * 102.24604 * 14 5 2 30 30 H 1.08998 * 110.61995 * 278.52188 * 15 14 5 31 31 H 1.09004 * 110.62116 * 155.52329 * 15 14 5 32 32 H 1.09000 * 109.87698 * 267.09463 * 17 16 15 33 33 H 1.08996 * 110.00056 * 146.00639 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0398 -0.7212 1.2494 5 6 2.0400 -0.7213 -1.2491 6 6 1.5718 -2.1537 -1.2577 7 1 2.2079 -2.9321 -0.8630 8 6 0.3313 -2.4705 -1.7694 9 7 -0.5000 -1.5130 -2.1186 10 14 -0.1685 -4.2595 -1.9669 11 1 -0.1455 -4.9290 -0.6416 12 1 -1.5390 -4.3308 -2.5344 13 1 0.7818 -4.9408 -2.8822 14 6 3.5849 -0.6528 -1.3215 15 6 3.8282 -0.3993 -2.8311 16 8 2.7443 0.4784 -3.2043 17 6 1.5695 0.0076 -2.5227 18 1 -0.3633 0.5137 -0.8901 19 1 -0.3634 0.5139 0.8899 20 1 -0.3634 -1.0277 -0.0005 21 1 1.6766 1.9563 0.8900 22 1 3.1299 1.4425 0.0005 23 1 1.6767 1.9563 -0.8900 24 1 1.6765 -1.7489 1.2494 25 1 3.1299 -0.7209 1.2496 26 1 1.6766 -0.2073 2.1392 27 1 -1.3725 -1.7359 -2.4790 28 1 3.9662 0.1737 -0.7219 29 1 4.0312 -1.5967 -1.0088 30 1 3.7759 -1.3332 -3.3905 31 1 4.7896 0.0900 -2.9881 32 1 1.0209 -0.6827 -3.1635 33 1 0.9319 0.8497 -2.2537 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261114045.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:46 Heat of formation + Delta-G solvation = -63.620751 kcal Electronic energy + Delta-G solvation = -14199.255311 eV Core-core repulsion = 12031.428451 eV Total energy + Delta-G solvation = -2167.826861 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.81552 -37.17506 -34.43648 -31.79540 -29.34346 -28.28138 -27.50291 -26.21638 -23.20054 -22.18576 -19.46468 -17.93440 -17.03862 -16.61263 -15.90923 -15.48858 -15.05444 -14.70084 -14.35846 -13.74495 -13.30583 -13.09468 -12.86553 -12.73316 -12.53786 -12.34107 -12.16938 -12.05432 -11.99933 -11.63916 -11.50390 -10.93700 -10.54368 -10.42775 -10.35032 -9.88854 -7.96380 -6.06526 1.43800 1.47108 1.51497 2.47469 3.24415 3.51083 4.16256 4.27649 4.45929 4.55214 4.59558 4.64631 4.88831 4.95222 5.02861 5.04959 5.14084 5.16394 5.29366 5.32834 5.35649 5.47039 5.50925 5.67199 5.74938 5.84304 6.00190 6.05171 6.26010 6.30895 6.53893 7.00422 7.54217 8.99618 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.032647 B = 0.017867 C = 0.014977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.463359 B = 1566.751749 C = 1869.023555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.055 4.055 3 C -0.137 4.137 4 C -0.117 4.117 5 C 0.051 3.949 6 C -0.507 4.507 7 H 0.050 0.950 8 C 0.025 3.975 9 N -0.890 5.890 10 Si 0.936 3.064 11 H -0.276 1.276 12 H -0.290 1.290 13 H -0.280 1.280 14 C -0.145 4.145 15 C 0.052 3.948 16 O -0.425 6.425 17 C 0.075 3.925 18 H 0.037 0.963 19 H 0.018 0.982 20 H 0.050 0.950 21 H 0.053 0.947 22 H 0.057 0.943 23 H 0.037 0.963 24 H 0.041 0.959 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.256 0.744 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.041 0.959 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.706 1.902 3.256 6.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.055 4.055 3 C -0.194 4.194 4 C -0.175 4.175 5 C 0.050 3.950 6 C -0.545 4.545 7 H 0.068 0.932 8 C -0.174 4.174 9 N -0.529 5.529 10 Si 0.764 3.236 11 H -0.202 1.202 12 H -0.216 1.216 13 H -0.206 1.206 14 C -0.182 4.182 15 C -0.025 4.025 16 O -0.345 6.345 17 C 0.000 4.000 18 H 0.056 0.944 19 H 0.037 0.963 20 H 0.069 0.931 21 H 0.072 0.928 22 H 0.076 0.924 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.118 0.882 32 H 0.074 0.926 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.512 2.098 3.038 5.830 hybrid contribution -0.728 -1.255 -0.217 1.467 sum 3.784 0.842 2.821 4.794 Atomic orbital electron populations 1.21641 0.95218 1.01302 0.97349 1.20621 0.95363 0.93604 0.95950 1.21963 1.00643 0.96460 1.00328 1.21626 0.99854 0.99893 0.96085 1.19459 0.90427 0.93899 0.91193 1.21197 1.00923 0.92697 1.39692 0.93215 1.25404 0.96626 0.99462 0.95949 1.70221 1.07609 1.31891 1.43147 0.85954 0.76903 0.82597 0.78142 1.20190 1.21583 1.20573 1.23287 0.97941 1.01069 0.95947 1.23445 0.90701 0.93369 0.94951 1.88649 1.20679 1.54174 1.71033 1.23324 0.85131 0.96509 0.95081 0.94382 0.96322 0.93107 0.92822 0.92418 0.94438 0.93980 0.93176 0.93496 0.93376 0.90741 0.91563 0.94091 0.88210 0.92597 0.93141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.42 6.75 71.98 0.49 -3.93 16 2 C -0.05 -2.28 0.32 -52.18 -0.02 -2.30 16 3 C -0.14 -5.02 7.91 71.98 0.57 -4.45 16 4 C -0.12 -4.42 8.04 71.98 0.58 -3.84 16 5 C 0.05 2.31 0.16 -51.94 -0.01 2.30 16 6 C -0.51 -25.48 6.45 25.60 0.17 -25.31 16 7 H 0.05 2.51 7.65 -2.91 -0.02 2.49 16 8 C 0.03 1.28 3.88 84.65 0.33 1.61 16 9 N -0.89 -46.80 7.54 21.45 0.16 -46.64 16 10 Si 0.94 41.92 29.54 68.60 2.03 43.94 16 11 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 12 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 13 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 14 C -0.14 -5.71 5.08 31.89 0.16 -5.55 16 15 C 0.05 2.03 7.72 72.66 0.56 2.59 16 16 O -0.42 -19.72 11.52 -148.98 -1.72 -21.44 16 17 C 0.08 3.72 4.83 72.36 0.35 4.07 16 18 H 0.04 1.83 5.85 -2.39 -0.01 1.82 16 19 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 20 H 0.05 2.54 5.60 -2.38 -0.01 2.53 16 21 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 22 H 0.06 1.95 5.97 -2.39 -0.01 1.94 16 23 H 0.04 1.46 6.48 -2.39 -0.02 1.44 16 24 H 0.04 1.73 7.24 -2.39 -0.02 1.71 16 25 H 0.05 1.72 7.31 -2.38 -0.02 1.71 16 26 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.26 13.25 8.31 -92.72 -0.77 12.48 16 28 H 0.07 2.66 5.53 -2.39 -0.01 2.65 16 29 H 0.07 2.54 7.74 -2.39 -0.02 2.52 16 30 H 0.04 1.65 8.14 -2.39 -0.02 1.64 16 31 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 32 H 0.06 3.12 5.55 -2.39 -0.01 3.11 16 33 H 0.05 2.56 5.05 -2.39 -0.01 2.55 16 Total: -1.00 -53.54 240.07 4.73 -48.81 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 1.08 Total: 10.15 kcal Atomic # 6 Polarization: -38.01 SS G_CDS: 3.18 Total: -34.83 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 0.16 Total: -46.64 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -1.72 Total: -21.44 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Total: -53.54 4.73 -48.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261114045.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.809 kcal (2) G-P(sol) polarization free energy of solvation -53.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds