Wall clock time and date at job start Mon Mar 30 2020 02:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42903 * 109.47137 * 2 1 4 4 C 1.42905 * 114.00297 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46838 * 29.99725 * 4 3 2 6 6 C 1.52999 * 109.46735 * 270.00089 * 4 3 2 7 7 C 1.53006 * 109.46626 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47164 * 59.99702 * 7 6 4 9 9 C 1.53002 * 109.47415 * 300.00027 * 8 7 6 10 10 H 1.08996 * 109.46550 * 300.00288 * 9 8 7 11 11 C 1.50697 * 109.47106 * 179.97438 * 9 8 7 12 12 H 1.07998 * 120.00039 * 239.99409 * 11 9 8 13 13 C 1.37880 * 119.99815 * 60.00007 * 11 9 8 14 14 N 1.31515 * 120.00246 * 359.97438 * 13 11 9 15 15 Si 1.86805 * 119.99777 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47274 * 90.00258 * 15 13 11 17 17 H 1.48503 * 109.46980 * 209.99792 * 15 13 11 18 18 H 1.48493 * 109.47135 * 329.99861 * 15 13 11 19 19 C 1.52996 * 109.46972 * 59.99860 * 9 8 7 20 20 H 1.08999 * 109.47291 * 59.99596 * 1 2 3 21 21 H 1.08992 * 109.47019 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47114 * 300.00070 * 1 2 3 23 23 H 1.08992 * 109.47305 * 240.00124 * 2 1 3 24 24 H 1.09002 * 109.47176 * 119.99646 * 2 1 3 25 25 H 1.08993 * 109.47839 * 59.99877 * 6 4 3 26 26 H 1.09000 * 109.47160 * 299.99439 * 6 4 3 27 27 H 1.09001 * 109.46998 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.47050 * 299.99699 * 7 6 4 29 29 H 1.09000 * 109.47140 * 60.00051 * 8 7 6 30 30 H 1.09001 * 109.47230 * 179.97438 * 8 7 6 31 31 H 0.97001 * 120.00170 * 180.02562 * 14 13 11 32 32 H 1.09000 * 109.47054 * 60.00300 * 19 9 8 33 33 H 1.09001 * 109.46997 * 180.02562 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.8632 0.6017 -0.5147 6 6 3.9398 1.5003 1.4417 7 6 5.4652 1.6205 1.4411 8 6 5.8751 2.9059 0.7196 9 6 5.3661 2.8658 -0.7227 10 1 5.7980 2.0071 -1.2366 11 6 5.7694 4.1322 -1.4331 12 1 5.0134 4.7855 -1.8432 13 6 7.1034 4.4568 -1.5595 14 7 8.0240 3.6615 -1.0598 15 14 7.6034 6.0262 -2.4407 16 1 7.6810 7.1403 -1.4619 17 1 8.9307 5.8345 -3.0785 18 1 6.5961 6.3515 -3.4821 19 6 3.8409 2.7456 -0.7220 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 3.6482 0.5844 1.9556 26 1 3.5076 2.3587 1.9558 27 1 5.8278 1.6495 2.4686 28 1 5.8971 0.7618 0.9271 29 1 5.4432 3.7646 1.2336 30 1 6.9617 2.9918 0.7195 31 1 8.9625 3.8900 -1.1484 32 1 3.4089 3.6043 -0.2081 33 1 3.4783 2.7166 -1.7496 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261122968.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:51 Heat of formation + Delta-G solvation = -80.324314 kcal Electronic energy + Delta-G solvation = -13082.368362 eV Core-core repulsion = 10913.817181 eV Total energy + Delta-G solvation = -2168.551181 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.53508 -36.04043 -32.70057 -31.09883 -29.81430 -28.11015 -24.79794 -22.65460 -21.36478 -20.87936 -18.72821 -16.72910 -15.72646 -15.27097 -14.57546 -14.42880 -13.38661 -13.29622 -12.86621 -12.56852 -12.26396 -12.07826 -11.56011 -11.40115 -11.03963 -10.91656 -10.64209 -10.57671 -10.11267 -9.98235 -9.80315 -9.51399 -9.10136 -9.05631 -8.51653 -8.26244 -5.95599 -4.01500 3.32952 3.39464 3.43208 4.10200 4.47775 5.17336 5.30930 5.34336 5.49460 5.54760 5.57625 5.73148 5.88938 6.00044 6.01983 6.19278 6.32643 6.44543 6.50770 6.60193 6.74375 6.83699 6.86910 7.16843 7.28374 7.54000 7.74637 7.79176 8.03837 8.18884 8.49719 9.02291 9.62907 11.10208 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.057170 B = 0.008422 C = 0.007633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.649472 B = 3323.679513 C = 3667.165836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.056 3.944 3 O -0.389 6.389 4 C 0.090 3.910 5 H 0.052 0.948 6 C -0.132 4.132 7 C -0.117 4.117 8 C -0.113 4.113 9 C 0.052 3.948 10 H 0.025 0.975 11 C -0.511 4.511 12 H 0.055 0.945 13 C 0.061 3.939 14 N -0.891 5.891 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.275 1.275 19 C -0.101 4.101 20 H 0.061 0.939 21 H 0.064 0.936 22 H 0.060 0.940 23 H 0.043 0.957 24 H 0.042 0.958 25 H 0.044 0.956 26 H 0.062 0.938 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.035 0.965 30 H 0.092 0.908 31 H 0.259 0.741 32 H 0.055 0.945 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.433 -6.176 3.233 10.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.309 6.309 4 C 0.033 3.967 5 H 0.070 0.930 6 C -0.170 4.170 7 C -0.155 4.155 8 C -0.151 4.151 9 C 0.034 3.966 10 H 0.043 0.957 11 C -0.549 4.549 12 H 0.074 0.926 13 C -0.140 4.140 14 N -0.531 5.531 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.138 4.138 20 H 0.080 0.920 21 H 0.083 0.917 22 H 0.079 0.921 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.110 0.890 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.358 -6.030 3.241 10.803 hybrid contribution 0.511 0.548 -0.384 0.842 sum -7.847 -5.482 2.857 9.989 Atomic orbital electron populations 1.21730 0.94445 1.01592 1.02889 1.22395 0.94993 0.85187 0.99532 1.87917 1.22714 1.25115 1.95114 1.22341 0.78907 0.99789 0.95665 0.93015 1.21982 0.97439 1.00676 0.96878 1.21596 0.93490 1.00794 0.99584 1.21656 1.04029 0.92913 0.96466 1.18628 0.87789 0.97177 0.93051 0.95693 1.21199 0.91792 1.06621 1.35315 0.92649 1.24963 0.96682 0.96755 0.95622 1.69881 1.00413 1.36991 1.45775 0.86615 0.77827 0.83765 0.79921 1.20725 1.21295 1.19945 1.21739 0.99623 0.94101 0.98379 0.92005 0.91687 0.92122 0.93863 0.94010 0.93735 0.91889 0.93590 0.93013 0.94641 0.88951 0.93083 0.92608 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 10.28 37.16 0.38 -1.32 16 2 C 0.06 0.79 6.47 37.16 0.24 1.03 16 3 O -0.39 -7.05 9.99 -35.23 -0.35 -7.40 16 4 C 0.09 1.73 2.61 -26.73 -0.07 1.66 16 5 H 0.05 0.97 7.79 -51.93 -0.40 0.57 16 6 C -0.13 -2.40 5.54 -26.73 -0.15 -2.55 16 7 C -0.12 -2.30 5.92 -26.73 -0.16 -2.46 16 8 C -0.11 -2.68 4.98 -26.73 -0.13 -2.82 16 9 C 0.05 1.31 2.10 -91.77 -0.19 1.12 16 10 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 11 C -0.51 -14.22 8.56 -34.44 -0.29 -14.51 16 12 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 14 N -0.89 -25.53 11.32 55.43 0.63 -24.90 16 15 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 C -0.10 -2.23 4.79 -26.73 -0.13 -2.36 16 20 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.04 0.58 8.08 -51.93 -0.42 0.16 16 24 H 0.04 0.55 7.87 -51.93 -0.41 0.14 16 25 H 0.04 0.72 7.87 -51.93 -0.41 0.31 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 31 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 263.88 15.07 3.98 3.98 Total: -1.00 -28.48 263.88 -7.09 -35.57 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -5.73 Total: -3.05 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: -0.60 Total: -20.62 kcal Atomic # 7 Polarization: -25.53 SS G_CDS: 0.63 Total: -24.90 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.35 Total: -7.40 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.48 -7.09 -35.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261122968.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.757 kcal (2) G-P(sol) polarization free energy of solvation -28.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds