Wall clock time and date at job start Mon Mar 30 2020 02:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42903 * 109.47137 * 2 1 4 4 C 1.42905 * 114.00297 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46838 * 29.99725 * 4 3 2 6 6 C 1.52999 * 109.46735 * 270.00089 * 4 3 2 7 7 C 1.53006 * 109.46626 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47164 * 59.99702 * 7 6 4 9 9 C 1.53002 * 109.47415 * 300.00027 * 8 7 6 10 10 H 1.08996 * 109.46550 * 300.00288 * 9 8 7 11 11 C 1.50697 * 109.47106 * 179.97438 * 9 8 7 12 12 H 1.07998 * 120.00039 * 239.99409 * 11 9 8 13 13 C 1.37880 * 119.99815 * 60.00007 * 11 9 8 14 14 N 1.31515 * 120.00246 * 359.97438 * 13 11 9 15 15 Si 1.86805 * 119.99777 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47274 * 90.00258 * 15 13 11 17 17 H 1.48503 * 109.46980 * 209.99792 * 15 13 11 18 18 H 1.48493 * 109.47135 * 329.99861 * 15 13 11 19 19 C 1.52996 * 109.46972 * 59.99860 * 9 8 7 20 20 H 1.08999 * 109.47291 * 59.99596 * 1 2 3 21 21 H 1.08992 * 109.47019 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47114 * 300.00070 * 1 2 3 23 23 H 1.08992 * 109.47305 * 240.00124 * 2 1 3 24 24 H 1.09002 * 109.47176 * 119.99646 * 2 1 3 25 25 H 1.08993 * 109.47839 * 59.99877 * 6 4 3 26 26 H 1.09000 * 109.47160 * 299.99439 * 6 4 3 27 27 H 1.09001 * 109.46998 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.47050 * 299.99699 * 7 6 4 29 29 H 1.09000 * 109.47140 * 60.00051 * 8 7 6 30 30 H 1.09001 * 109.47230 * 179.97438 * 8 7 6 31 31 H 0.97001 * 120.00170 * 180.02562 * 14 13 11 32 32 H 1.09000 * 109.47054 * 60.00300 * 19 9 8 33 33 H 1.09001 * 109.46997 * 180.02562 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.8632 0.6017 -0.5147 6 6 3.9398 1.5003 1.4417 7 6 5.4652 1.6205 1.4411 8 6 5.8751 2.9059 0.7196 9 6 5.3661 2.8658 -0.7227 10 1 5.7980 2.0071 -1.2366 11 6 5.7694 4.1322 -1.4331 12 1 5.0134 4.7855 -1.8432 13 6 7.1034 4.4568 -1.5595 14 7 8.0240 3.6615 -1.0598 15 14 7.6034 6.0262 -2.4407 16 1 7.6810 7.1403 -1.4619 17 1 8.9307 5.8345 -3.0785 18 1 6.5961 6.3515 -3.4821 19 6 3.8409 2.7456 -0.7220 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 3.6482 0.5844 1.9556 26 1 3.5076 2.3587 1.9558 27 1 5.8278 1.6495 2.4686 28 1 5.8971 0.7618 0.9271 29 1 5.4432 3.7646 1.2336 30 1 6.9617 2.9918 0.7195 31 1 8.9625 3.8900 -1.1484 32 1 3.4089 3.6043 -0.2081 33 1 3.4783 2.7166 -1.7496 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261122968.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:51 Heat of formation + Delta-G solvation = -96.327515 kcal Electronic energy + Delta-G solvation = -13083.062313 eV Core-core repulsion = 10913.817181 eV Total energy + Delta-G solvation = -2169.245132 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.06722 -37.62863 -34.66557 -32.29837 -31.64184 -29.71446 -26.82549 -23.76120 -23.05368 -22.57237 -20.50075 -18.59233 -17.36151 -16.61221 -16.38032 -16.00454 -15.07193 -14.85558 -14.39756 -14.26957 -13.69513 -13.49417 -13.05895 -12.84361 -12.80249 -12.53740 -12.32125 -12.13867 -11.84680 -11.70816 -11.55258 -11.32515 -10.93559 -10.79917 -10.41390 -10.15112 -8.08416 -6.22372 1.41450 1.41979 1.52435 2.42931 2.82079 3.17978 3.92609 4.01040 4.21245 4.29578 4.36037 4.46677 4.53569 4.68342 4.70067 4.80935 4.87904 4.95989 5.03499 5.06797 5.13142 5.22904 5.31113 5.38272 5.44817 5.61021 5.68337 5.99923 6.15598 6.37995 6.45355 6.88466 7.45397 8.95838 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.057170 B = 0.008422 C = 0.007633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.649472 B = 3323.679513 C = 3667.165836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.045 3.955 3 O -0.405 6.405 4 C 0.097 3.903 5 H 0.054 0.946 6 C -0.124 4.124 7 C -0.110 4.110 8 C -0.107 4.107 9 C 0.050 3.950 10 H -0.002 1.002 11 C -0.537 4.537 12 H 0.049 0.951 13 C 0.014 3.986 14 N -0.915 5.915 15 Si 0.954 3.046 16 H -0.275 1.275 17 H -0.281 1.281 18 H -0.271 1.271 19 C -0.094 4.094 20 H 0.055 0.945 21 H 0.093 0.907 22 H 0.060 0.940 23 H 0.048 0.952 24 H 0.056 0.944 25 H 0.075 0.925 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.026 0.974 30 H 0.062 0.938 31 H 0.261 0.739 32 H 0.047 0.953 33 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.366 -6.784 3.786 12.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 O -0.325 6.325 4 C 0.040 3.960 5 H 0.073 0.927 6 C -0.162 4.162 7 C -0.147 4.147 8 C -0.145 4.145 9 C 0.031 3.969 10 H 0.016 0.984 11 C -0.575 4.575 12 H 0.067 0.933 13 C -0.185 4.185 14 N -0.555 5.555 15 Si 0.779 3.221 16 H -0.201 1.201 17 H -0.207 1.207 18 H -0.195 1.195 19 C -0.132 4.132 20 H 0.075 0.925 21 H 0.112 0.888 22 H 0.079 0.921 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.094 0.906 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.045 0.955 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.305 -6.646 3.797 12.048 hybrid contribution 0.774 0.705 -0.578 1.196 sum -8.531 -5.942 3.218 10.883 Atomic orbital electron populations 1.21746 0.92423 1.03411 1.02641 1.22728 0.96671 0.83304 1.00466 1.87885 1.21498 1.27891 1.95244 1.22086 0.80047 0.97871 0.95998 0.92745 1.21901 0.95816 1.02144 0.96317 1.21494 0.94919 0.98182 1.00129 1.21478 1.01898 0.95057 0.96075 1.18574 0.89848 0.95022 0.93430 0.98393 1.21561 0.92159 1.07740 1.36077 0.93318 1.25717 0.96653 0.99808 0.96286 1.70008 1.00629 1.38436 1.46406 0.85626 0.77534 0.80038 0.78887 1.20069 1.20680 1.19519 1.21551 0.97351 0.95867 0.98407 0.92542 0.88834 0.92106 0.93400 0.92582 0.90607 0.92123 0.91421 0.93007 0.95482 0.91968 0.92964 0.93427 0.93883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 10.28 71.98 0.74 -2.18 16 2 C 0.04 1.14 6.47 71.98 0.47 1.60 16 3 O -0.40 -13.96 9.99 -148.98 -1.49 -15.45 16 4 C 0.10 3.61 2.61 30.59 0.08 3.69 16 5 H 0.05 1.98 7.79 -2.39 -0.02 1.96 16 6 C -0.12 -4.23 5.54 30.60 0.17 -4.06 16 7 C -0.11 -4.16 5.92 30.60 0.18 -3.98 16 8 C -0.11 -5.15 4.98 30.59 0.15 -5.00 16 9 C 0.05 2.57 2.10 -11.54 -0.02 2.54 16 10 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 11 C -0.54 -30.57 8.56 25.60 0.22 -30.35 16 12 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 13 C 0.01 0.79 5.30 84.66 0.45 1.24 16 14 N -0.92 -53.29 11.32 21.45 0.24 -53.05 16 15 Si 0.95 44.30 29.54 68.60 2.03 46.33 16 16 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 18 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 19 C -0.09 -4.19 4.79 30.59 0.15 -4.05 16 20 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 21 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 23 H 0.05 1.18 8.08 -2.39 -0.02 1.16 16 24 H 0.06 1.28 7.87 -2.39 -0.02 1.26 16 25 H 0.08 2.15 7.87 -2.39 -0.02 2.13 16 26 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.06 3.37 6.07 -2.39 -0.01 3.35 16 31 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 32 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -61.02 263.88 4.40 -56.62 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: 1.04 Total: 6.08 kcal Atomic # 6 Polarization: -43.11 SS G_CDS: 2.58 Total: -40.53 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: 0.24 Total: -53.05 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -1.49 Total: -15.45 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -61.02 4.40 -56.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261122968.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.709 kcal (2) G-P(sol) polarization free energy of solvation -61.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds