Wall clock time and date at job start Mon Mar 30 2020 02:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42903 * 109.47180 * 2 1 4 4 C 1.42903 * 113.99767 * 179.97438 * 3 2 1 5 5 H 1.08992 * 109.47388 * 329.99699 * 4 3 2 6 6 C 1.53002 * 109.46923 * 89.99668 * 4 3 2 7 7 C 1.52997 * 109.46817 * 179.97438 * 6 4 3 8 8 C 1.53005 * 109.47452 * 300.00239 * 7 6 4 9 9 C 1.52999 * 109.47159 * 59.99536 * 8 7 6 10 10 H 1.09002 * 109.46716 * 60.00455 * 9 8 7 11 11 C 1.50697 * 109.46961 * 180.02562 * 9 8 7 12 12 H 1.08001 * 119.99890 * 120.00923 * 11 9 8 13 13 C 1.37876 * 120.00428 * 300.00269 * 11 9 8 14 14 N 1.31519 * 119.99563 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00432 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46756 * 59.99920 * 15 13 11 17 17 H 1.48490 * 109.47381 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47117 * 300.00527 * 15 13 11 19 19 C 1.52997 * 109.47317 * 300.00546 * 9 8 7 20 20 H 1.09005 * 109.47391 * 300.00669 * 1 2 3 21 21 H 1.09004 * 109.46978 * 60.00546 * 1 2 3 22 22 H 1.08997 * 109.47192 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47297 * 239.99228 * 2 1 3 24 24 H 1.09004 * 109.46978 * 119.99454 * 2 1 3 25 25 H 1.08993 * 109.47662 * 299.99887 * 6 4 3 26 26 H 1.09002 * 109.47075 * 60.00393 * 6 4 3 27 27 H 1.09002 * 109.47153 * 60.00231 * 7 6 4 28 28 H 1.09001 * 109.47289 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.47360 * 180.02562 * 8 7 6 30 30 H 1.09002 * 109.46935 * 300.00125 * 8 7 6 31 31 H 0.97002 * 119.99731 * 180.02562 * 14 13 11 32 32 H 1.09002 * 109.47153 * 299.99641 * 19 9 8 33 33 H 1.09001 * 109.46832 * 179.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8631 0.6017 0.5147 6 6 3.9399 1.5000 -1.4417 7 6 5.4650 1.6214 -1.4411 8 6 5.8741 2.9074 -0.7200 9 6 5.3650 2.8675 0.7222 10 1 5.7975 2.0093 1.2365 11 6 5.7673 4.1344 1.4321 12 1 5.0109 4.7872 1.8420 13 6 7.1011 4.4600 1.5586 14 7 8.0222 3.6651 1.0591 15 14 7.5999 6.0308 2.4380 16 1 7.1056 5.9926 3.8378 17 1 9.0801 6.1488 2.4393 18 1 7.0102 7.1993 1.7366 19 6 3.8398 2.7461 0.7215 20 1 -0.3634 0.5140 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 3.6482 0.5841 -1.9555 26 1 3.5077 2.3585 -1.9559 27 1 5.8976 0.7632 -0.9268 28 1 5.8277 1.6503 -2.4686 29 1 6.9606 2.9941 -0.7200 30 1 5.4415 3.7656 -1.2344 31 1 8.9606 3.8940 1.1484 32 1 3.4073 3.6043 0.2072 33 1 3.4773 2.7172 1.7491 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261122969.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:53 Heat of formation + Delta-G solvation = -80.287465 kcal Electronic energy + Delta-G solvation = -13082.426776 eV Core-core repulsion = 10913.877193 eV Total energy + Delta-G solvation = -2168.549583 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.53514 -36.03953 -32.69932 -31.09875 -29.81315 -28.10896 -24.79573 -22.65390 -21.36472 -20.87820 -18.72732 -16.72754 -15.72433 -15.27050 -14.57546 -14.43160 -13.38640 -13.29588 -12.86514 -12.56356 -12.26352 -12.07689 -11.55774 -11.40107 -11.03888 -10.90314 -10.65934 -10.57188 -10.11789 -9.98881 -9.80092 -9.50864 -9.10455 -9.05630 -8.51707 -8.25919 -5.95359 -4.01336 3.34659 3.38874 3.41988 4.10301 4.47866 5.17332 5.31008 5.34451 5.49469 5.54782 5.57647 5.73177 5.88978 6.00054 6.01972 6.19275 6.32717 6.44532 6.50841 6.60252 6.74439 6.83739 6.86961 7.16894 7.28465 7.54052 7.74667 7.79099 8.04000 8.18957 8.49833 9.02201 9.62990 11.10434 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.057166 B = 0.008423 C = 0.007634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.682608 B = 3323.440740 C = 3666.972959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.056 3.944 3 O -0.389 6.389 4 C 0.090 3.910 5 H 0.052 0.948 6 C -0.132 4.132 7 C -0.117 4.117 8 C -0.113 4.113 9 C 0.052 3.948 10 H 0.025 0.975 11 C -0.512 4.512 12 H 0.055 0.945 13 C 0.061 3.939 14 N -0.892 5.892 15 Si 0.891 3.109 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.101 4.101 20 H 0.061 0.939 21 H 0.060 0.940 22 H 0.064 0.936 23 H 0.042 0.958 24 H 0.043 0.957 25 H 0.044 0.956 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.045 0.955 29 H 0.092 0.908 30 H 0.035 0.965 31 H 0.260 0.740 32 H 0.055 0.945 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.411 -6.180 -3.237 10.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.309 6.309 4 C 0.033 3.967 5 H 0.070 0.930 6 C -0.170 4.170 7 C -0.155 4.155 8 C -0.151 4.151 9 C 0.034 3.966 10 H 0.043 0.957 11 C -0.550 4.550 12 H 0.073 0.927 13 C -0.140 4.140 14 N -0.531 5.531 15 Si 0.719 3.281 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.138 4.138 20 H 0.080 0.920 21 H 0.079 0.921 22 H 0.083 0.917 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.111 0.889 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.331 -6.032 -3.252 10.787 hybrid contribution 0.497 0.548 0.399 0.841 sum -7.833 -5.484 -2.853 9.979 Atomic orbital electron populations 1.21730 0.94446 1.01591 1.02888 1.22395 0.94994 0.85191 0.99532 1.87918 1.22714 1.25111 1.95113 1.22343 0.78908 0.99783 0.95668 0.93009 1.21981 0.97443 1.00675 0.96879 1.21596 0.93491 1.00794 0.99585 1.21657 1.04029 0.92904 0.96468 1.18622 0.87787 0.97155 0.93046 0.95703 1.21162 0.91786 1.06643 1.35422 0.92705 1.24961 0.96672 0.96765 0.95601 1.69874 1.00436 1.37103 1.45653 0.86671 0.77221 0.83923 0.80265 1.20329 1.21345 1.20300 1.21740 0.99632 0.94093 0.98380 0.92011 0.92117 0.91688 0.94008 0.93866 0.93730 0.91892 0.93015 0.93590 0.88949 0.94640 0.93026 0.92606 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 10.28 37.16 0.38 -1.33 16 2 C 0.06 0.79 6.47 37.16 0.24 1.03 16 3 O -0.39 -7.05 9.99 -35.23 -0.35 -7.40 16 4 C 0.09 1.73 2.61 -26.73 -0.07 1.66 16 5 H 0.05 0.98 7.79 -51.93 -0.40 0.57 16 6 C -0.13 -2.40 5.54 -26.73 -0.15 -2.55 16 7 C -0.12 -2.30 5.92 -26.73 -0.16 -2.46 16 8 C -0.11 -2.68 4.98 -26.73 -0.13 -2.82 16 9 C 0.05 1.32 2.10 -91.78 -0.19 1.13 16 10 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 11 C -0.51 -14.25 8.56 -34.44 -0.29 -14.54 16 12 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 13 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 14 N -0.89 -25.53 11.32 55.43 0.63 -24.91 16 15 Si 0.89 21.46 29.54 -169.99 -5.02 16.43 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 C -0.10 -2.23 4.79 -26.73 -0.13 -2.36 16 20 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.04 0.55 7.87 -51.93 -0.41 0.14 16 24 H 0.04 0.58 8.08 -51.93 -0.42 0.16 16 25 H 0.04 0.72 7.87 -51.93 -0.41 0.31 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 30 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 263.88 15.07 3.98 3.98 Total: -1.00 -28.45 263.88 -7.09 -35.55 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -5.73 Total: -3.02 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: -0.60 Total: -20.63 kcal Atomic # 7 Polarization: -25.53 SS G_CDS: 0.63 Total: -24.91 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.35 Total: -7.40 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.45 -7.09 -35.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261122969.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.741 kcal (2) G-P(sol) polarization free energy of solvation -28.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds