Wall clock time and date at job start Mon Mar 30 2020 02:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42903 * 109.47180 * 2 1 4 4 C 1.42903 * 113.99767 * 179.97438 * 3 2 1 5 5 H 1.08992 * 109.47388 * 329.99699 * 4 3 2 6 6 C 1.53002 * 109.46923 * 89.99668 * 4 3 2 7 7 C 1.52997 * 109.46817 * 179.97438 * 6 4 3 8 8 C 1.53005 * 109.47452 * 300.00239 * 7 6 4 9 9 C 1.52999 * 109.47159 * 59.99536 * 8 7 6 10 10 H 1.09002 * 109.46716 * 60.00455 * 9 8 7 11 11 C 1.50697 * 109.46961 * 180.02562 * 9 8 7 12 12 H 1.08001 * 119.99890 * 120.00923 * 11 9 8 13 13 C 1.37876 * 120.00428 * 300.00269 * 11 9 8 14 14 N 1.31519 * 119.99563 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00432 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46756 * 59.99920 * 15 13 11 17 17 H 1.48490 * 109.47381 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47117 * 300.00527 * 15 13 11 19 19 C 1.52997 * 109.47317 * 300.00546 * 9 8 7 20 20 H 1.09005 * 109.47391 * 300.00669 * 1 2 3 21 21 H 1.09004 * 109.46978 * 60.00546 * 1 2 3 22 22 H 1.08997 * 109.47192 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47297 * 239.99228 * 2 1 3 24 24 H 1.09004 * 109.46978 * 119.99454 * 2 1 3 25 25 H 1.08993 * 109.47662 * 299.99887 * 6 4 3 26 26 H 1.09002 * 109.47075 * 60.00393 * 6 4 3 27 27 H 1.09002 * 109.47153 * 60.00231 * 7 6 4 28 28 H 1.09001 * 109.47289 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.47360 * 180.02562 * 8 7 6 30 30 H 1.09002 * 109.46935 * 300.00125 * 8 7 6 31 31 H 0.97002 * 119.99731 * 180.02562 * 14 13 11 32 32 H 1.09002 * 109.47153 * 299.99641 * 19 9 8 33 33 H 1.09001 * 109.46832 * 179.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8631 0.6017 0.5147 6 6 3.9399 1.5000 -1.4417 7 6 5.4650 1.6214 -1.4411 8 6 5.8741 2.9074 -0.7200 9 6 5.3650 2.8675 0.7222 10 1 5.7975 2.0093 1.2365 11 6 5.7673 4.1344 1.4321 12 1 5.0109 4.7872 1.8420 13 6 7.1011 4.4600 1.5586 14 7 8.0222 3.6651 1.0591 15 14 7.5999 6.0308 2.4380 16 1 7.1056 5.9926 3.8378 17 1 9.0801 6.1488 2.4393 18 1 7.0102 7.1993 1.7366 19 6 3.8398 2.7461 0.7215 20 1 -0.3634 0.5140 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 3.6482 0.5841 -1.9555 26 1 3.5077 2.3585 -1.9559 27 1 5.8976 0.7632 -0.9268 28 1 5.8277 1.6503 -2.4686 29 1 6.9606 2.9941 -0.7200 30 1 5.4415 3.7656 -1.2344 31 1 8.9606 3.8940 1.1484 32 1 3.4073 3.6043 0.2072 33 1 3.4773 2.7172 1.7491 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261122969.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:53 Heat of formation + Delta-G solvation = -96.272813 kcal Electronic energy + Delta-G solvation = -13083.119953 eV Core-core repulsion = 10913.877193 eV Total energy + Delta-G solvation = -2169.242760 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.06744 -37.62805 -34.66438 -32.29854 -31.64096 -29.71355 -26.82317 -23.76074 -23.05391 -22.57149 -20.50039 -18.58955 -17.35954 -16.61315 -16.38237 -16.00407 -15.07088 -14.85532 -14.39183 -14.26895 -13.69618 -13.49163 -13.05704 -12.84743 -12.78959 -12.54350 -12.32538 -12.13555 -11.85383 -11.70635 -11.55672 -11.32108 -10.93505 -10.80279 -10.40840 -10.15227 -8.08201 -6.22241 1.41936 1.43168 1.50965 2.43061 2.82178 3.18136 3.92636 4.01026 4.21225 4.29597 4.36013 4.46672 4.53556 4.68353 4.70076 4.80941 4.87879 4.96011 5.03522 5.06788 5.13131 5.22912 5.31097 5.38288 5.44803 5.60921 5.68326 5.99980 6.15643 6.38040 6.45362 6.88407 7.45455 8.95888 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.057166 B = 0.008423 C = 0.007634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.682608 B = 3323.440740 C = 3666.972959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.044 3.956 3 O -0.405 6.405 4 C 0.097 3.903 5 H 0.055 0.945 6 C -0.124 4.124 7 C -0.110 4.110 8 C -0.107 4.107 9 C 0.050 3.950 10 H -0.002 1.002 11 C -0.539 4.539 12 H 0.049 0.951 13 C 0.014 3.986 14 N -0.915 5.915 15 Si 0.953 3.047 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.272 1.272 19 C -0.094 4.094 20 H 0.055 0.945 21 H 0.060 0.940 22 H 0.093 0.907 23 H 0.056 0.944 24 H 0.048 0.952 25 H 0.075 0.925 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.026 0.974 31 H 0.261 0.739 32 H 0.047 0.953 33 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.352 -6.788 -3.778 12.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 O -0.325 6.325 4 C 0.040 3.960 5 H 0.073 0.927 6 C -0.162 4.162 7 C -0.147 4.147 8 C -0.145 4.145 9 C 0.032 3.968 10 H 0.016 0.984 11 C -0.577 4.577 12 H 0.067 0.933 13 C -0.184 4.184 14 N -0.555 5.555 15 Si 0.779 3.221 16 H -0.198 1.198 17 H -0.207 1.207 18 H -0.197 1.197 19 C -0.132 4.132 20 H 0.075 0.925 21 H 0.079 0.921 22 H 0.112 0.888 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.094 0.906 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.287 -6.649 -3.794 12.035 hybrid contribution 0.761 0.704 0.589 1.193 sum -8.525 -5.944 -3.205 10.876 Atomic orbital electron populations 1.21747 0.92425 1.03410 1.02640 1.22728 0.96670 0.83307 1.00466 1.87886 1.21498 1.27887 1.95243 1.22087 0.80048 0.97866 0.96000 0.92735 1.21901 0.95820 1.02141 0.96319 1.21494 0.94920 0.98178 1.00132 1.21478 1.01899 0.95048 0.96077 1.18570 0.89848 0.95004 0.93425 0.98409 1.21537 0.92172 1.07772 1.36181 0.93308 1.25717 0.96640 0.99826 0.96263 1.70004 1.00620 1.38543 1.46292 0.85684 0.77033 0.80173 0.79211 1.19777 1.20684 1.19740 1.21552 0.97354 0.95856 0.98414 0.92548 0.92102 0.88835 0.92581 0.93401 0.90598 0.92135 0.93008 0.91419 0.91963 0.95491 0.92955 0.93435 0.93872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 10.28 71.98 0.74 -2.18 16 2 C 0.04 1.14 6.47 71.98 0.47 1.60 16 3 O -0.40 -13.96 9.99 -148.98 -1.49 -15.45 16 4 C 0.10 3.61 2.61 30.60 0.08 3.69 16 5 H 0.05 1.99 7.79 -2.39 -0.02 1.97 16 6 C -0.12 -4.23 5.54 30.59 0.17 -4.06 16 7 C -0.11 -4.16 5.92 30.60 0.18 -3.98 16 8 C -0.11 -5.15 4.98 30.60 0.15 -5.00 16 9 C 0.05 2.58 2.10 -11.54 -0.02 2.56 16 10 H 0.00 -0.13 8.14 -2.39 -0.02 -0.14 16 11 C -0.54 -30.64 8.56 25.60 0.22 -30.42 16 12 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 13 C 0.01 0.80 5.30 84.65 0.45 1.25 16 14 N -0.92 -53.30 11.32 21.45 0.24 -53.06 16 15 Si 0.95 44.28 29.54 68.60 2.03 46.31 16 16 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 17 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 19 C -0.09 -4.20 4.79 30.59 0.15 -4.05 16 20 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 21 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 22 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.06 1.28 7.87 -2.39 -0.02 1.26 16 24 H 0.05 1.18 8.08 -2.38 -0.02 1.16 16 25 H 0.08 2.15 7.87 -2.39 -0.02 2.13 16 26 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.06 3.37 6.07 -2.39 -0.01 3.36 16 30 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 32 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -60.99 263.88 4.40 -56.58 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: 1.04 Total: 6.20 kcal Atomic # 6 Polarization: -43.17 SS G_CDS: 2.58 Total: -40.59 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: 0.24 Total: -53.06 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -1.49 Total: -15.45 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -60.99 4.40 -56.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261122969.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.688 kcal (2) G-P(sol) polarization free energy of solvation -60.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds