Wall clock time and date at job start Mon Mar 30 2020 02:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42899 * 109.46802 * 2 1 4 4 C 1.42902 * 113.99533 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47068 * 30.00589 * 4 3 2 6 6 C 1.52991 * 109.47545 * 270.00290 * 4 3 2 7 7 C 1.53004 * 109.47244 * 299.99999 * 6 4 3 8 8 C 1.52997 * 109.47117 * 300.00306 * 7 6 4 9 9 C 1.53001 * 109.47247 * 59.99827 * 8 7 6 10 10 H 1.08997 * 109.47315 * 60.00373 * 9 8 7 11 11 C 1.50699 * 109.47030 * 180.02562 * 9 8 7 12 12 H 1.07999 * 120.00803 * 119.99828 * 11 9 8 13 13 C 1.37881 * 119.99889 * 299.99649 * 11 9 8 14 14 N 1.31520 * 120.00186 * 180.02562 * 13 11 9 15 15 Si 1.86798 * 120.00030 * 0.02562 * 13 11 9 16 16 H 1.48506 * 109.47297 * 89.99863 * 15 13 11 17 17 H 1.48503 * 109.47261 * 330.00044 * 15 13 11 18 18 H 1.48500 * 109.47454 * 210.00037 * 15 13 11 19 19 C 1.52998 * 109.46975 * 299.99668 * 9 8 7 20 20 H 1.08996 * 109.47191 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.46606 * 299.99682 * 1 2 3 22 22 H 1.09003 * 109.47505 * 59.99518 * 1 2 3 23 23 H 1.09003 * 109.46606 * 240.00318 * 2 1 3 24 24 H 1.08994 * 109.46947 * 120.00372 * 2 1 3 25 25 H 1.09002 * 109.47281 * 60.00083 * 6 4 3 26 26 H 1.08995 * 109.47265 * 180.02562 * 6 4 3 27 27 H 1.09008 * 109.46680 * 59.99801 * 7 6 4 28 28 H 1.08994 * 109.47425 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.47262 * 299.99358 * 8 7 6 30 30 H 1.09002 * 109.46961 * 179.97438 * 8 7 6 31 31 H 0.96998 * 120.00124 * 180.02562 * 14 13 11 32 32 H 1.09004 * 109.47139 * 180.02562 * 19 9 8 33 33 H 1.08997 * 109.47675 * 300.00485 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8635 0.6015 -0.5130 6 6 3.9388 1.5005 1.4432 7 6 3.3315 2.7057 2.1641 8 6 3.7415 3.9912 1.4429 9 6 3.2335 3.9508 0.0002 10 1 2.1470 3.8648 -0.0002 11 6 3.6379 5.2167 -0.7104 12 1 4.2650 5.1666 -1.5882 13 6 3.2073 6.4391 -0.2397 14 7 3.5597 7.5439 -0.8601 15 14 2.1232 6.5260 1.2790 16 1 2.9755 6.6393 2.4898 17 1 1.2971 5.2952 1.3686 18 1 1.2351 7.7125 1.1861 19 6 3.8409 2.7457 -0.7207 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 3.6467 0.5847 1.9570 26 1 5.0253 1.5870 1.4436 27 1 2.2448 2.6196 2.1637 28 1 3.6930 2.7342 3.1920 29 1 4.8280 4.0773 1.4433 30 1 3.3085 4.8497 1.9562 31 1 3.2571 8.4038 -0.5288 32 1 3.4794 2.7171 -1.7487 33 1 4.9275 2.8317 -0.7203 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261122971.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:54 Heat of formation + Delta-G solvation = -68.653263 kcal Electronic energy + Delta-G solvation = -13423.210362 eV Core-core repulsion = 11255.165275 eV Total energy + Delta-G solvation = -2168.045087 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.83425 -35.91996 -32.58340 -31.07972 -30.15455 -28.87286 -24.70593 -22.62105 -21.85252 -20.74461 -18.85204 -16.64076 -15.88077 -15.49206 -15.15833 -14.10145 -13.63531 -13.53758 -12.77244 -12.61314 -12.35447 -12.17764 -11.72269 -11.45255 -11.27539 -11.01862 -10.87592 -10.72649 -10.26791 -9.95967 -9.82682 -9.45557 -9.16886 -8.84611 -8.63002 -8.39942 -5.97133 -3.94709 3.35955 3.46940 3.52907 4.09134 4.52416 5.16715 5.22943 5.33218 5.40956 5.45057 5.47382 5.52849 5.73207 5.90677 6.01683 6.08995 6.18531 6.23922 6.25738 6.35087 6.49819 6.57105 6.66865 6.84135 7.04472 7.13585 7.38474 7.70961 7.80989 7.91737 8.63839 9.07312 9.66996 11.16389 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.040363 B = 0.011301 C = 0.011052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.539144 B = 2477.065638 C = 2532.954706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.369 6.369 4 C 0.089 3.911 5 H 0.047 0.953 6 C -0.133 4.133 7 C -0.116 4.116 8 C -0.119 4.119 9 C 0.019 3.981 10 H 0.036 0.964 11 C -0.511 4.511 12 H 0.071 0.929 13 C 0.067 3.933 14 N -0.907 5.907 15 Si 0.887 3.113 16 H -0.281 1.281 17 H -0.262 1.262 18 H -0.300 1.300 19 C -0.095 4.095 20 H 0.063 0.937 21 H 0.061 0.939 22 H 0.063 0.937 23 H 0.041 0.959 24 H 0.040 0.960 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.044 0.956 29 H 0.055 0.945 30 H 0.044 0.956 31 H 0.262 0.738 32 H 0.059 0.941 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.425 -14.180 4.268 15.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.289 6.289 4 C 0.031 3.969 5 H 0.065 0.935 6 C -0.171 4.171 7 C -0.153 4.153 8 C -0.156 4.156 9 C 0.000 4.000 10 H 0.054 0.946 11 C -0.549 4.549 12 H 0.089 0.911 13 C -0.134 4.134 14 N -0.545 5.545 15 Si 0.718 3.282 16 H -0.208 1.208 17 H -0.187 1.187 18 H -0.228 1.228 19 C -0.132 4.132 20 H 0.082 0.918 21 H 0.080 0.920 22 H 0.082 0.918 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.563 -13.828 4.259 14.694 hybrid contribution -0.316 -0.038 0.903 0.957 sum -2.879 -13.866 5.161 15.073 Atomic orbital electron populations 1.21722 0.94328 1.01472 1.03218 1.22413 0.95297 0.85340 0.99164 1.88056 1.21476 1.24446 1.94906 1.22254 0.80627 0.98738 0.95239 0.93523 1.21952 1.00421 0.98186 0.96565 1.21487 1.00815 0.95549 0.97485 1.21959 1.00579 0.94561 0.98550 1.19050 0.96709 0.93479 0.90773 0.94585 1.21140 1.31670 0.89130 1.12938 0.91080 1.25018 0.95730 0.95714 0.96890 1.69914 1.46159 0.97759 1.40709 0.86835 0.80871 0.77077 0.83428 1.20829 1.18690 1.22826 1.21564 0.99945 0.92876 0.98841 0.91777 0.92014 0.91820 0.94053 0.94184 0.93211 0.91485 0.92045 0.93690 0.92595 0.93810 0.92873 0.92252 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 10.28 37.16 0.38 -1.42 16 2 C 0.05 0.75 6.47 37.16 0.24 0.99 16 3 O -0.37 -6.66 8.64 -35.23 -0.30 -6.97 16 4 C 0.09 1.53 2.92 -26.73 -0.08 1.46 16 5 H 0.05 0.70 7.79 -51.93 -0.40 0.29 16 6 C -0.13 -2.16 5.63 -26.73 -0.15 -2.31 16 7 C -0.12 -2.16 5.78 -26.73 -0.15 -2.31 16 8 C -0.12 -2.67 4.68 -26.73 -0.13 -2.80 16 9 C 0.02 0.46 1.55 -91.77 -0.14 0.31 16 10 H 0.04 0.95 6.74 -51.93 -0.35 0.60 16 11 C -0.51 -14.79 9.14 -34.44 -0.31 -15.11 16 12 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 13 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 14 N -0.91 -28.56 13.96 55.43 0.77 -27.79 16 15 Si 0.89 23.00 24.37 -169.99 -4.14 18.86 16 16 H -0.28 -7.08 6.87 56.52 0.39 -6.69 16 17 H -0.26 -6.63 6.53 56.52 0.37 -6.26 16 18 H -0.30 -7.79 7.11 56.52 0.40 -7.38 16 19 C -0.09 -1.95 4.88 -26.73 -0.13 -2.08 16 20 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.04 0.51 8.09 -51.93 -0.42 0.09 16 24 H 0.04 0.50 7.87 -51.93 -0.41 0.09 16 25 H 0.05 0.70 7.87 -51.93 -0.41 0.29 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.06 1.20 7.68 -51.92 -0.40 0.80 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.04 1.05 3.27 -51.93 -0.17 0.88 16 31 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 254.99 15.07 3.84 3.84 Total: -1.00 -31.26 254.99 -5.94 -37.20 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -5.54 Total: -3.79 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: -0.57 Total: -21.36 kcal Atomic # 7 Polarization: -28.56 SS G_CDS: 0.77 Total: -27.79 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -0.30 Total: -6.97 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -4.14 Total: 18.86 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -31.26 -5.94 -37.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261122971.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.452 kcal (2) G-P(sol) polarization free energy of solvation -31.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds