Wall clock time and date at job start Mon Mar 30 2020 02:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42899 * 109.46802 * 2 1 4 4 C 1.42902 * 113.99533 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47068 * 30.00589 * 4 3 2 6 6 C 1.52991 * 109.47545 * 270.00290 * 4 3 2 7 7 C 1.53004 * 109.47244 * 299.99999 * 6 4 3 8 8 C 1.52997 * 109.47117 * 300.00306 * 7 6 4 9 9 C 1.53001 * 109.47247 * 59.99827 * 8 7 6 10 10 H 1.08997 * 109.47315 * 60.00373 * 9 8 7 11 11 C 1.50699 * 109.47030 * 180.02562 * 9 8 7 12 12 H 1.07999 * 120.00803 * 119.99828 * 11 9 8 13 13 C 1.37881 * 119.99889 * 299.99649 * 11 9 8 14 14 N 1.31520 * 120.00186 * 180.02562 * 13 11 9 15 15 Si 1.86798 * 120.00030 * 0.02562 * 13 11 9 16 16 H 1.48506 * 109.47297 * 89.99863 * 15 13 11 17 17 H 1.48503 * 109.47261 * 330.00044 * 15 13 11 18 18 H 1.48500 * 109.47454 * 210.00037 * 15 13 11 19 19 C 1.52998 * 109.46975 * 299.99668 * 9 8 7 20 20 H 1.08996 * 109.47191 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.46606 * 299.99682 * 1 2 3 22 22 H 1.09003 * 109.47505 * 59.99518 * 1 2 3 23 23 H 1.09003 * 109.46606 * 240.00318 * 2 1 3 24 24 H 1.08994 * 109.46947 * 120.00372 * 2 1 3 25 25 H 1.09002 * 109.47281 * 60.00083 * 6 4 3 26 26 H 1.08995 * 109.47265 * 180.02562 * 6 4 3 27 27 H 1.09008 * 109.46680 * 59.99801 * 7 6 4 28 28 H 1.08994 * 109.47425 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.47262 * 299.99358 * 8 7 6 30 30 H 1.09002 * 109.46961 * 179.97438 * 8 7 6 31 31 H 0.96998 * 120.00124 * 180.02562 * 14 13 11 32 32 H 1.09004 * 109.47139 * 180.02562 * 19 9 8 33 33 H 1.08997 * 109.47675 * 300.00485 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8635 0.6015 -0.5130 6 6 3.9388 1.5005 1.4432 7 6 3.3315 2.7057 2.1641 8 6 3.7415 3.9912 1.4429 9 6 3.2335 3.9508 0.0002 10 1 2.1470 3.8648 -0.0002 11 6 3.6379 5.2167 -0.7104 12 1 4.2650 5.1666 -1.5882 13 6 3.2073 6.4391 -0.2397 14 7 3.5597 7.5439 -0.8601 15 14 2.1232 6.5260 1.2790 16 1 2.9755 6.6393 2.4898 17 1 1.2971 5.2952 1.3686 18 1 1.2351 7.7125 1.1861 19 6 3.8409 2.7457 -0.7207 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 3.6467 0.5847 1.9570 26 1 5.0253 1.5870 1.4436 27 1 2.2448 2.6196 2.1637 28 1 3.6930 2.7342 3.1920 29 1 4.8280 4.0773 1.4433 30 1 3.3085 4.8497 1.9562 31 1 3.2571 8.4038 -0.5288 32 1 3.4794 2.7171 -1.7487 33 1 4.9275 2.8317 -0.7203 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261122971.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:54 Heat of formation + Delta-G solvation = -89.057484 kcal Electronic energy + Delta-G solvation = -13424.095155 eV Core-core repulsion = 11255.165275 eV Total energy + Delta-G solvation = -2168.929880 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.24790 -37.40702 -34.65300 -32.28512 -31.93379 -30.29519 -26.70849 -23.65715 -23.40079 -22.45790 -20.40938 -18.81848 -17.32405 -16.87913 -16.56324 -15.72597 -15.38844 -14.98027 -14.74185 -13.98462 -13.70098 -13.61874 -13.25147 -12.96564 -12.77472 -12.49163 -12.39970 -12.15375 -11.90714 -11.71082 -11.64898 -11.21533 -10.96048 -10.70444 -10.48775 -10.14927 -8.29465 -6.31238 1.27911 1.34858 1.47062 2.33416 2.93158 3.06856 3.94983 3.98682 4.09874 4.24867 4.39160 4.47205 4.56318 4.56701 4.64527 4.73199 4.82696 4.86065 4.93239 5.05688 5.09226 5.15970 5.26917 5.31727 5.40420 5.45945 5.60463 5.75719 5.86906 6.33947 6.55537 6.76622 7.34249 8.87620 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.040363 B = 0.011301 C = 0.011052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.539144 B = 2477.065638 C = 2532.954706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.047 3.953 3 O -0.402 6.402 4 C 0.093 3.907 5 H 0.077 0.923 6 C -0.129 4.129 7 C -0.111 4.111 8 C -0.119 4.119 9 C 0.020 3.980 10 H 0.016 0.984 11 C -0.518 4.518 12 H 0.033 0.967 13 C 0.010 3.990 14 N -0.953 5.953 15 Si 0.951 3.049 16 H -0.265 1.265 17 H -0.254 1.254 18 H -0.300 1.300 19 C -0.095 4.095 20 H 0.094 0.906 21 H 0.052 0.948 22 H 0.050 0.950 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.027 0.973 31 H 0.264 0.736 32 H 0.043 0.957 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.755 -16.703 6.157 18.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.322 6.322 4 C 0.035 3.965 5 H 0.095 0.905 6 C -0.167 4.167 7 C -0.149 4.149 8 C -0.157 4.157 9 C 0.002 3.998 10 H 0.034 0.966 11 C -0.556 4.556 12 H 0.051 0.949 13 C -0.187 4.187 14 N -0.594 5.594 15 Si 0.779 3.221 16 H -0.191 1.191 17 H -0.178 1.178 18 H -0.228 1.228 19 C -0.132 4.132 20 H 0.113 0.887 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.889 -16.378 6.150 17.732 hybrid contribution -0.194 0.733 0.194 0.782 sum -3.083 -15.645 6.343 17.162 Atomic orbital electron populations 1.21759 0.93570 1.03150 1.02160 1.22689 0.96007 0.83569 1.00672 1.88020 1.21684 1.27365 1.95137 1.22165 0.80937 0.97377 0.95994 0.90497 1.21953 1.01041 0.98237 0.95435 1.21434 1.00439 0.94305 0.98678 1.21863 1.00353 0.96427 0.97043 1.18954 0.95645 0.92800 0.92447 0.96570 1.21537 1.30507 0.91542 1.12014 0.94897 1.25868 0.97310 0.95308 1.00184 1.70058 1.48052 0.98489 1.42795 0.85796 0.79173 0.77143 0.80001 1.19146 1.17805 1.22811 1.21494 0.99911 0.93661 0.98175 0.88733 0.92862 0.93097 0.92751 0.92282 0.90096 0.90143 0.93038 0.91130 0.92587 0.95483 0.92697 0.93780 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 10.28 71.98 0.74 -2.46 16 2 C 0.05 1.12 6.47 71.98 0.47 1.58 16 3 O -0.40 -13.54 8.64 -148.98 -1.29 -14.83 16 4 C 0.09 2.92 2.92 30.59 0.09 3.01 16 5 H 0.08 1.98 7.79 -2.39 -0.02 1.96 16 6 C -0.13 -3.62 5.63 30.59 0.17 -3.45 16 7 C -0.11 -3.76 5.78 30.59 0.18 -3.59 16 8 C -0.12 -5.18 4.68 30.59 0.14 -5.03 16 9 C 0.02 1.00 1.55 -11.54 -0.02 0.98 16 10 H 0.02 0.85 6.74 -2.39 -0.02 0.84 16 11 C -0.52 -30.98 9.14 25.60 0.23 -30.74 16 12 H 0.03 2.15 7.99 -2.91 -0.02 2.12 16 13 C 0.01 0.58 5.45 84.65 0.46 1.04 16 14 N -0.95 -61.93 13.96 21.45 0.30 -61.63 16 15 Si 0.95 48.07 24.37 68.60 1.67 49.74 16 16 H -0.27 -12.65 6.87 99.48 0.68 -11.96 16 17 H -0.25 -12.35 6.53 99.48 0.65 -11.70 16 18 H -0.30 -15.01 7.11 99.48 0.71 -14.31 16 19 C -0.09 -3.85 4.88 30.60 0.15 -3.70 16 20 H 0.09 1.42 8.14 -2.39 -0.02 1.41 16 21 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 22 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.05 1.15 8.09 -2.39 -0.02 1.13 16 24 H 0.06 1.19 7.87 -2.39 -0.02 1.17 16 25 H 0.08 1.83 7.87 -2.39 -0.02 1.81 16 26 H 0.08 2.06 8.14 -2.39 -0.02 2.05 16 27 H 0.05 1.85 7.68 -2.38 -0.02 1.84 16 28 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.03 1.25 3.27 -2.39 -0.01 1.24 16 31 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 32 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -69.15 254.99 4.27 -64.88 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: 0.97 Total: 4.20 kcal Atomic # 6 Polarization: -44.97 SS G_CDS: 2.61 Total: -42.35 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: 0.30 Total: -61.63 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -1.29 Total: -14.83 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 1.67 Total: 49.74 kcal Total: -69.15 4.27 -64.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261122971.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.178 kcal (2) G-P(sol) polarization free energy of solvation -69.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds