Wall clock time and date at job start Mon Mar 30 2020 02:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42904 * 109.46799 * 2 1 4 4 C 1.42896 * 113.99809 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46984 * 329.99746 * 4 3 2 6 6 C 1.52997 * 109.47412 * 89.99745 * 4 3 2 7 7 C 1.53006 * 109.47164 * 60.00080 * 6 4 3 8 8 C 1.52997 * 109.47127 * 59.99836 * 7 6 4 9 9 C 1.53000 * 109.47060 * 300.00449 * 8 7 6 10 10 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 11 11 C 1.50703 * 109.46912 * 179.97438 * 9 8 7 12 12 H 1.07998 * 120.00275 * 239.99876 * 11 9 8 13 13 C 1.37884 * 119.99709 * 60.00027 * 11 9 8 14 14 N 1.31518 * 120.00224 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99653 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47452 * 59.99576 * 15 13 11 17 17 H 1.48496 * 109.47065 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46988 * 299.99434 * 15 13 11 19 19 C 1.52996 * 109.47328 * 60.00126 * 9 8 7 20 20 H 1.09006 * 109.46818 * 60.00514 * 1 2 3 21 21 H 1.08999 * 109.46921 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47501 * 299.99854 * 1 2 3 23 23 H 1.08993 * 109.47044 * 239.99918 * 2 1 3 24 24 H 1.08993 * 109.46859 * 119.99726 * 2 1 3 25 25 H 1.09001 * 109.47375 * 180.02562 * 6 4 3 26 26 H 1.09000 * 109.47140 * 300.00132 * 6 4 3 27 27 H 1.08998 * 109.46505 * 299.99708 * 7 6 4 28 28 H 1.08996 * 109.46884 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.47153 * 180.02562 * 8 7 6 30 30 H 1.09001 * 109.46832 * 60.00321 * 8 7 6 31 31 H 0.96997 * 119.99752 * 180.02562 * 14 13 11 32 32 H 1.08992 * 109.47554 * 59.99639 * 19 9 8 33 33 H 1.09004 * 109.47108 * 179.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8635 0.6016 0.5130 6 6 3.9387 1.5006 -1.4432 7 6 3.3313 2.7058 -2.1642 8 6 3.7413 3.9913 -1.4429 9 6 3.2335 3.9508 -0.0002 10 1 2.1469 3.8648 0.0002 11 6 3.6379 5.2168 0.7104 12 1 4.2650 5.1666 1.5882 13 6 3.2071 6.4392 0.2398 14 7 2.4438 6.5003 -0.8295 15 14 3.7090 8.0084 1.1201 16 1 5.1894 8.1249 1.1191 17 1 3.1193 9.1784 0.4211 18 1 3.2165 7.9694 2.5206 19 6 3.8409 2.7457 0.7206 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 5.0253 1.5863 -1.4437 26 1 3.6466 0.5848 -1.9571 27 1 2.2448 2.6196 -2.1638 28 1 3.6928 2.7343 -3.1920 29 1 3.3083 4.8499 -1.9562 30 1 4.8279 4.0774 -1.4434 31 1 2.1412 7.3603 -1.1607 32 1 4.9274 2.8318 0.7202 33 1 3.4794 2.7172 1.7486 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261122973.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:56 Heat of formation + Delta-G solvation = -75.986692 kcal Electronic energy + Delta-G solvation = -13329.245039 eV Core-core repulsion = 11160.881951 eV Total energy + Delta-G solvation = -2168.363088 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.58910 -35.63501 -32.60128 -30.84149 -29.71945 -28.35394 -24.73094 -22.51484 -21.36522 -20.81054 -18.60336 -16.36766 -15.60722 -15.31082 -14.58940 -14.32850 -13.50347 -13.21808 -12.62422 -12.36135 -12.03556 -11.88163 -11.48167 -11.29866 -10.91990 -10.86512 -10.68644 -10.54799 -10.36713 -10.00905 -9.69463 -9.26638 -9.05226 -8.73640 -8.39858 -8.14807 -5.85520 -3.91616 3.38238 3.42636 3.45240 4.23901 4.52775 5.28340 5.38115 5.43134 5.59126 5.60092 5.62658 5.73154 5.85148 6.12143 6.14409 6.31148 6.42404 6.45263 6.54457 6.63676 6.83964 6.86469 6.97257 7.25995 7.44386 7.68692 7.85198 7.89998 8.25616 8.31893 8.60664 9.13310 9.71702 11.19716 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.046338 B = 0.009676 C = 0.009226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.117157 B = 2893.064050 C = 3034.080140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.055 3.945 3 O -0.366 6.366 4 C 0.092 3.908 5 H 0.040 0.960 6 C -0.134 4.134 7 C -0.112 4.112 8 C -0.109 4.109 9 C 0.054 3.946 10 H 0.035 0.965 11 C -0.513 4.513 12 H 0.051 0.949 13 C 0.061 3.939 14 N -0.889 5.889 15 Si 0.887 3.113 16 H -0.279 1.279 17 H -0.288 1.288 18 H -0.279 1.279 19 C -0.105 4.105 20 H 0.062 0.938 21 H 0.062 0.938 22 H 0.062 0.938 23 H 0.039 0.961 24 H 0.039 0.961 25 H 0.061 0.939 26 H 0.043 0.957 27 H 0.058 0.942 28 H 0.037 0.963 29 H 0.090 0.910 30 H 0.028 0.972 31 H 0.258 0.742 32 H 0.058 0.942 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.016 -10.719 -0.313 10.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.286 6.286 4 C 0.035 3.965 5 H 0.058 0.942 6 C -0.172 4.172 7 C -0.150 4.150 8 C -0.147 4.147 9 C 0.036 3.964 10 H 0.054 0.946 11 C -0.552 4.552 12 H 0.070 0.930 13 C -0.140 4.140 14 N -0.529 5.529 15 Si 0.716 3.284 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.204 1.204 19 C -0.143 4.143 20 H 0.081 0.919 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.080 0.920 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.108 0.892 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.201 -10.420 -0.428 10.430 hybrid contribution 0.494 0.588 0.407 0.869 sum 0.293 -9.832 -0.022 9.836 Atomic orbital electron populations 1.21713 0.94363 1.01318 1.03268 1.22394 0.95289 0.85561 0.98970 1.88081 1.21487 1.24103 1.94880 1.22202 0.80556 0.98398 0.95348 0.94182 1.21982 1.00099 0.98569 0.96571 1.21503 1.00503 0.95907 0.97085 1.21602 0.98254 0.95868 0.98957 1.18549 0.96544 0.90288 0.91024 0.94647 1.21245 1.30923 0.91290 1.11697 0.93042 1.24959 0.95158 0.98807 0.95079 1.69887 1.35299 1.24766 1.22905 0.86739 0.78696 0.83146 0.79850 1.20441 1.21395 1.20427 1.21748 0.99560 0.94291 0.98669 0.91883 0.91918 0.91906 0.94277 0.94311 0.92012 0.93780 0.92284 0.94452 0.89216 0.95287 0.93167 0.92353 0.93068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 10.28 37.16 0.38 -1.57 16 2 C 0.06 0.82 6.47 37.16 0.24 1.06 16 3 O -0.37 -7.16 8.64 -35.23 -0.30 -7.46 16 4 C 0.09 1.74 2.92 -26.73 -0.08 1.66 16 5 H 0.04 0.66 7.79 -51.93 -0.40 0.25 16 6 C -0.13 -2.41 5.63 -26.73 -0.15 -2.56 16 7 C -0.11 -2.33 5.78 -26.73 -0.15 -2.48 16 8 C -0.11 -2.68 4.98 -26.73 -0.13 -2.81 16 9 C 0.05 1.41 1.96 -91.77 -0.18 1.23 16 10 H 0.04 1.03 7.68 -51.93 -0.40 0.64 16 11 C -0.51 -14.58 8.56 -34.44 -0.29 -14.87 16 12 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 13 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 14 N -0.89 -26.21 11.32 55.43 0.63 -25.58 16 15 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 C -0.11 -2.30 4.88 -26.73 -0.13 -2.43 16 20 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 21 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 22 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 23 H 0.04 0.54 7.87 -51.93 -0.41 0.13 16 24 H 0.04 0.52 8.08 -51.93 -0.42 0.10 16 25 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.04 0.70 7.87 -51.93 -0.41 0.29 16 27 H 0.06 1.29 7.68 -51.93 -0.40 0.89 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 261.80 15.07 3.95 3.95 Total: -1.00 -29.59 261.80 -7.02 -36.62 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -5.68 Total: -3.19 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: -0.59 Total: -21.13 kcal Atomic # 7 Polarization: -26.21 SS G_CDS: 0.63 Total: -25.58 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: -0.30 Total: -7.46 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.59 -7.02 -36.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261122973.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.372 kcal (2) G-P(sol) polarization free energy of solvation -29.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds