Wall clock time and date at job start Mon Mar 30 2020 02:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42904 * 109.46799 * 2 1 4 4 C 1.42896 * 113.99809 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46984 * 329.99746 * 4 3 2 6 6 C 1.52997 * 109.47412 * 89.99745 * 4 3 2 7 7 C 1.53006 * 109.47164 * 60.00080 * 6 4 3 8 8 C 1.52997 * 109.47127 * 59.99836 * 7 6 4 9 9 C 1.53000 * 109.47060 * 300.00449 * 8 7 6 10 10 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 11 11 C 1.50703 * 109.46912 * 179.97438 * 9 8 7 12 12 H 1.07998 * 120.00275 * 239.99876 * 11 9 8 13 13 C 1.37884 * 119.99709 * 60.00027 * 11 9 8 14 14 N 1.31518 * 120.00224 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99653 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47452 * 59.99576 * 15 13 11 17 17 H 1.48496 * 109.47065 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46988 * 299.99434 * 15 13 11 19 19 C 1.52996 * 109.47328 * 60.00126 * 9 8 7 20 20 H 1.09006 * 109.46818 * 60.00514 * 1 2 3 21 21 H 1.08999 * 109.46921 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47501 * 299.99854 * 1 2 3 23 23 H 1.08993 * 109.47044 * 239.99918 * 2 1 3 24 24 H 1.08993 * 109.46859 * 119.99726 * 2 1 3 25 25 H 1.09001 * 109.47375 * 180.02562 * 6 4 3 26 26 H 1.09000 * 109.47140 * 300.00132 * 6 4 3 27 27 H 1.08998 * 109.46505 * 299.99708 * 7 6 4 28 28 H 1.08996 * 109.46884 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.47153 * 180.02562 * 8 7 6 30 30 H 1.09001 * 109.46832 * 60.00321 * 8 7 6 31 31 H 0.96997 * 119.99752 * 180.02562 * 14 13 11 32 32 H 1.08992 * 109.47554 * 59.99639 * 19 9 8 33 33 H 1.09004 * 109.47108 * 179.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8635 0.6016 0.5130 6 6 3.9387 1.5006 -1.4432 7 6 3.3313 2.7058 -2.1642 8 6 3.7413 3.9913 -1.4429 9 6 3.2335 3.9508 -0.0002 10 1 2.1469 3.8648 0.0002 11 6 3.6379 5.2168 0.7104 12 1 4.2650 5.1666 1.5882 13 6 3.2071 6.4392 0.2398 14 7 2.4438 6.5003 -0.8295 15 14 3.7090 8.0084 1.1201 16 1 5.1894 8.1249 1.1191 17 1 3.1193 9.1784 0.4211 18 1 3.2165 7.9694 2.5206 19 6 3.8409 2.7457 0.7206 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 5.0253 1.5863 -1.4437 26 1 3.6466 0.5848 -1.9571 27 1 2.2448 2.6196 -2.1638 28 1 3.6928 2.7343 -3.1920 29 1 3.3083 4.8499 -1.9562 30 1 4.8279 4.0774 -1.4434 31 1 2.1412 7.3603 -1.1607 32 1 4.9274 2.8318 0.7202 33 1 3.4794 2.7172 1.7486 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261122973.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:56 Heat of formation + Delta-G solvation = -93.286269 kcal Electronic energy + Delta-G solvation = -13329.995205 eV Core-core repulsion = 11160.881951 eV Total energy + Delta-G solvation = -2169.113254 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.11752 -37.26229 -34.59132 -32.13705 -31.55353 -29.97157 -26.78754 -23.66987 -23.06398 -22.58840 -20.29769 -18.43509 -17.13421 -16.67556 -16.42824 -15.96988 -15.15440 -14.72239 -14.43006 -13.73413 -13.60128 -13.56323 -12.99548 -12.83796 -12.75369 -12.53573 -12.34598 -12.12198 -11.92796 -11.78399 -11.61374 -11.14289 -10.75132 -10.60227 -10.27874 -10.08541 -8.03057 -6.18124 1.40930 1.42939 1.50426 2.45300 2.96928 3.22058 4.03090 4.06177 4.22822 4.25103 4.43018 4.55440 4.57036 4.72458 4.80093 4.86118 4.90144 4.99864 5.06804 5.15130 5.18302 5.24252 5.31048 5.46772 5.55208 5.66267 5.75980 6.14263 6.25494 6.45377 6.59842 6.96798 7.49257 9.00359 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.046338 B = 0.009676 C = 0.009226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.117157 B = 2893.064050 C = 3034.080140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.046 3.954 3 O -0.402 6.402 4 C 0.094 3.906 5 H 0.074 0.926 6 C -0.128 4.128 7 C -0.106 4.106 8 C -0.103 4.103 9 C 0.054 3.946 10 H -0.010 1.010 11 C -0.538 4.538 12 H 0.051 0.949 13 C 0.009 3.991 14 N -0.918 5.918 15 Si 0.953 3.047 16 H -0.269 1.269 17 H -0.284 1.284 18 H -0.273 1.273 19 C -0.102 4.102 20 H 0.049 0.951 21 H 0.096 0.904 22 H 0.050 0.950 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.039 0.961 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.028 0.972 31 H 0.259 0.741 32 H 0.067 0.933 33 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.958 -12.196 -0.095 12.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.030 4.030 3 O -0.322 6.322 4 C 0.036 3.964 5 H 0.092 0.908 6 C -0.166 4.166 7 C -0.143 4.143 8 C -0.141 4.141 9 C 0.035 3.965 10 H 0.008 0.992 11 C -0.576 4.576 12 H 0.069 0.931 13 C -0.189 4.189 14 N -0.557 5.557 15 Si 0.779 3.221 16 H -0.194 1.194 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.140 4.140 20 H 0.069 0.931 21 H 0.115 0.885 22 H 0.069 0.931 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.744 -11.912 -0.205 11.937 hybrid contribution 0.147 1.033 0.346 1.100 sum 0.890 -10.879 0.141 10.916 Atomic orbital electron populations 1.21750 0.93547 1.03147 1.02071 1.22688 0.96081 0.83693 1.00545 1.88058 1.21839 1.27217 1.95106 1.22155 0.80819 0.97580 0.95821 0.90768 1.21950 1.00734 0.98107 0.95787 1.21381 0.99541 0.95321 0.98106 1.21415 0.97661 0.96790 0.98211 1.18450 0.94008 0.91580 0.92425 0.99156 1.21681 1.31110 0.92828 1.12017 0.93099 1.25785 0.95141 1.02182 0.95805 1.70053 1.36117 1.25426 1.24137 0.85693 0.78726 0.79013 0.78700 1.19407 1.20964 1.19856 1.21639 0.99748 0.94460 0.98104 0.93138 0.88535 0.93076 0.92588 0.92598 0.90479 0.90780 0.94217 0.92549 0.92931 0.95318 0.93241 0.91408 0.93941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 10.28 71.98 0.74 -2.88 16 2 C 0.05 1.26 6.47 71.98 0.47 1.72 16 3 O -0.40 -15.30 8.64 -148.98 -1.29 -16.58 16 4 C 0.09 3.31 2.92 30.59 0.09 3.40 16 5 H 0.07 2.14 7.79 -2.39 -0.02 2.12 16 6 C -0.13 -4.22 5.63 30.60 0.17 -4.05 16 7 C -0.11 -4.30 5.78 30.60 0.18 -4.13 16 8 C -0.10 -5.14 4.98 30.59 0.15 -4.98 16 9 C 0.05 2.87 1.96 -11.54 -0.02 2.85 16 10 H -0.01 -0.60 7.68 -2.39 -0.02 -0.62 16 11 C -0.54 -31.23 8.56 25.60 0.22 -31.01 16 12 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 13 C 0.01 0.52 5.30 84.66 0.45 0.97 16 14 N -0.92 -55.73 11.32 21.45 0.24 -55.49 16 15 Si 0.95 45.24 29.54 68.60 2.03 47.27 16 16 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 17 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 18 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 19 C -0.10 -4.40 4.88 30.59 0.15 -4.25 16 20 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 21 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 22 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.06 1.33 7.87 -2.39 -0.02 1.31 16 24 H 0.06 1.33 8.08 -2.39 -0.02 1.31 16 25 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.07 2.04 7.87 -2.39 -0.02 2.02 16 27 H 0.04 1.74 7.68 -2.39 -0.02 1.73 16 28 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.05 3.00 6.07 -2.39 -0.01 2.99 16 30 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 32 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 Total: -1.00 -65.37 261.80 4.62 -60.75 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: 1.05 Total: 6.43 kcal Atomic # 6 Polarization: -44.96 SS G_CDS: 2.59 Total: -42.37 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: 0.24 Total: -55.49 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -1.29 Total: -16.58 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -65.37 4.62 -60.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261122973.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.539 kcal (2) G-P(sol) polarization free energy of solvation -65.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds