Wall clock time and date at job start Mon Mar 30 2020 02:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00437 * 2 1 4 4 C 1.52997 * 109.47356 * 210.00230 * 3 2 1 5 5 C 1.53006 * 109.46974 * 299.99722 * 4 3 2 6 6 C 1.52999 * 109.47000 * 300.00410 * 5 4 3 7 7 C 1.53006 * 109.46626 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.46914 * 174.99639 * 7 6 5 9 9 H 1.07999 * 120.00165 * 0.02562 * 8 7 6 10 10 C 1.37873 * 120.00194 * 179.97438 * 8 7 6 11 11 N 1.31520 * 120.00463 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 119.99963 * 0.02562 * 10 8 7 13 13 H 1.48489 * 109.47043 * 89.99782 * 12 10 8 14 14 H 1.48496 * 109.47157 * 210.00520 * 12 10 8 15 15 H 1.48504 * 109.46658 * 330.00196 * 12 10 8 16 16 C 1.52997 * 109.47592 * 59.99968 * 6 5 4 17 17 C 1.52996 * 109.46975 * 300.00042 * 16 6 5 18 18 H 1.09002 * 109.47308 * 179.97438 * 1 2 3 19 19 H 1.09004 * 109.46784 * 299.99719 * 1 2 3 20 20 H 1.09004 * 109.46897 * 59.99809 * 1 2 3 21 21 H 1.09002 * 109.47063 * 330.00242 * 3 2 1 22 22 H 1.09000 * 109.47140 * 180.02562 * 4 3 2 23 23 H 1.09001 * 109.46922 * 59.99816 * 4 3 2 24 24 H 1.08993 * 109.46765 * 179.97438 * 5 4 3 25 25 H 1.09000 * 109.46866 * 60.00225 * 5 4 3 26 26 H 1.09000 * 109.47160 * 299.99635 * 6 5 4 27 27 H 1.08995 * 109.46794 * 294.99833 * 7 6 5 28 28 H 1.09000 * 109.47314 * 54.99967 * 7 6 5 29 29 H 0.96994 * 119.99914 * 180.02562 * 11 10 8 30 30 H 1.09000 * 109.47140 * 59.99654 * 16 6 5 31 31 H 1.09001 * 109.47375 * 179.97438 * 16 6 5 32 32 H 1.09004 * 109.47368 * 299.99783 * 17 16 6 33 33 H 1.08996 * 109.47261 * 180.02562 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3589 1.2631 -0.7213 5 6 4.2928 0.2891 0.0000 6 6 4.5001 0.7549 1.4425 7 6 5.4345 -0.2188 2.1635 8 6 5.7369 0.3043 3.5441 9 1 5.3055 1.2377 3.8743 10 6 6.5634 -0.4092 4.3859 11 7 6.8270 0.0471 5.5909 12 14 7.3090 -2.0240 3.8150 13 1 8.6155 -1.7616 3.1598 14 1 7.5119 -2.9164 4.9844 15 1 6.3921 -2.6775 2.8468 16 6 3.1515 0.7972 2.1638 17 6 2.2177 1.7712 1.4425 18 1 -0.3634 -1.0277 -0.0005 19 1 -0.3633 0.5138 0.8901 20 1 -0.3633 0.5139 -0.8900 21 1 1.3451 1.9993 -0.5138 22 1 3.8025 2.2588 -0.7209 23 1 3.2111 0.9312 -1.7489 24 1 5.2533 0.2587 -0.5141 25 1 3.8494 -0.7067 0.0000 26 1 4.9435 1.7507 1.4425 27 1 4.9531 -1.1936 2.2417 28 1 6.3627 -0.3161 1.6005 29 1 7.4088 -0.4547 6.1830 30 1 2.7081 -0.1986 2.1637 31 1 3.2993 1.1287 3.1916 32 1 2.6611 2.7670 1.4425 33 1 1.2571 1.8017 1.9566 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261124780.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:00 Heat of formation + Delta-G solvation = -77.120804 kcal Electronic energy + Delta-G solvation = -13173.037177 eV Core-core repulsion = 11004.624910 eV Total energy + Delta-G solvation = -2168.412267 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.06582 -36.10554 -32.88562 -30.94555 -30.27106 -27.17414 -26.17631 -22.80192 -22.05053 -20.07423 -18.94408 -16.65215 -16.02260 -15.49649 -15.14063 -14.26264 -13.71917 -13.42786 -12.96957 -12.56020 -12.45405 -12.20769 -11.73323 -11.72271 -11.11824 -10.99821 -10.60367 -10.54713 -10.42760 -10.01453 -9.65406 -9.54314 -9.22814 -9.07939 -8.82691 -8.44422 -5.96003 -3.92143 3.36844 3.43978 3.49820 3.98215 4.53439 5.04668 5.12762 5.26145 5.37412 5.38784 5.44463 5.64665 5.70861 5.77746 5.94977 5.99439 6.03620 6.13687 6.27487 6.39348 6.58872 6.77998 6.80051 7.03641 7.09313 7.23143 7.41261 7.43908 7.62674 7.90837 8.64473 9.09820 9.67847 11.17542 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.051683 B = 0.008801 C = 0.008587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.637066 B = 3180.740549 C = 3259.821622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.376 6.376 3 C 0.091 3.909 4 C -0.113 4.113 5 C -0.113 4.113 6 C -0.071 4.071 7 C -0.010 4.010 8 C -0.512 4.512 9 H 0.072 0.928 10 C 0.063 3.937 11 N -0.908 5.908 12 Si 0.878 3.122 13 H -0.279 1.279 14 H -0.289 1.289 15 H -0.265 1.265 16 C -0.098 4.098 17 C -0.141 4.141 18 H 0.081 0.919 19 H 0.038 0.962 20 H 0.034 0.966 21 H 0.050 0.950 22 H 0.070 0.930 23 H 0.058 0.942 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.015 0.985 28 H 0.009 0.991 29 H 0.261 0.739 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.290 1.585 -11.775 15.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.295 6.295 3 C 0.033 3.967 4 C -0.151 4.151 5 C -0.151 4.151 6 C -0.089 4.089 7 C -0.047 4.047 8 C -0.550 4.550 9 H 0.090 0.910 10 C -0.137 4.137 11 N -0.547 5.547 12 Si 0.705 3.295 13 H -0.205 1.205 14 H -0.216 1.216 15 H -0.190 1.190 16 C -0.136 4.136 17 C -0.179 4.179 18 H 0.099 0.901 19 H 0.057 0.943 20 H 0.053 0.947 21 H 0.068 0.932 22 H 0.089 0.911 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.034 0.966 28 H 0.027 0.973 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.081 1.375 -11.613 15.439 hybrid contribution 0.233 -0.585 -0.108 0.639 sum -9.848 0.790 -11.721 15.329 Atomic orbital electron populations 1.22722 0.82201 1.02239 0.99380 1.87970 1.18539 1.28031 1.94992 1.22145 0.94485 0.83994 0.96030 1.21630 0.94347 1.00627 0.98461 1.21580 0.97779 0.99075 0.96617 1.20997 0.95692 0.99787 0.92469 1.19619 0.94034 0.95099 0.95983 1.21192 1.28393 1.08424 0.96942 0.90951 1.25035 0.96213 0.97623 0.94801 1.69922 1.37884 1.39309 1.07616 0.86804 0.79912 0.84421 0.78328 1.20453 1.21563 1.18959 1.21374 0.94207 0.98594 0.99388 1.22075 1.00082 1.00121 0.95643 0.90085 0.94306 0.94719 0.93244 0.91106 0.92328 0.92818 0.91743 0.92406 0.96631 0.97273 0.92930 0.92237 0.91058 0.91558 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.82 101.05 1.09 1.45 16 2 O -0.38 -5.74 9.00 -35.23 -0.32 -6.06 16 3 C 0.09 1.30 2.92 -26.73 -0.08 1.22 16 4 C -0.11 -1.63 5.66 -26.73 -0.15 -1.78 16 5 C -0.11 -1.97 5.06 -26.73 -0.14 -2.11 16 6 C -0.07 -1.46 2.14 -90.62 -0.19 -1.65 16 7 C -0.01 -0.25 3.52 -27.88 -0.10 -0.35 16 8 C -0.51 -14.80 8.96 -34.44 -0.31 -15.11 16 9 H 0.07 2.23 7.30 -52.49 -0.38 1.85 16 10 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 11 N -0.91 -28.52 13.96 55.43 0.77 -27.75 16 12 Si 0.88 22.41 27.47 -169.99 -4.67 17.74 16 13 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 15 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 16 C -0.10 -1.92 4.87 -26.73 -0.13 -2.05 16 17 C -0.14 -2.20 5.63 -26.73 -0.15 -2.35 16 18 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 19 H 0.04 0.42 7.87 -51.93 -0.41 0.01 16 20 H 0.03 0.33 8.09 -51.93 -0.42 -0.09 16 21 H 0.05 0.60 7.79 -51.93 -0.40 0.20 16 22 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 25 H 0.06 1.18 7.68 -51.93 -0.40 0.79 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 28 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 29 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 30 H 0.06 1.21 7.68 -51.93 -0.40 0.81 16 31 H 0.07 1.55 6.95 -51.93 -0.36 1.19 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.05 0.77 7.87 -51.93 -0.41 0.37 16 LS Contribution 259.38 15.07 3.91 3.91 Total: -1.00 -31.17 259.38 -6.21 -37.38 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: -5.65 Total: -4.30 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: -0.25 Total: -20.92 kcal Atomic # 7 Polarization: -28.52 SS G_CDS: 0.77 Total: -27.75 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.32 Total: -6.06 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.67 Total: 17.74 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.17 -6.21 -37.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261124780.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.742 kcal (2) G-P(sol) polarization free energy of solvation -31.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds