Wall clock time and date at job start Mon Mar 30 2020 02:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00437 * 2 1 4 4 C 1.52997 * 109.47356 * 210.00230 * 3 2 1 5 5 C 1.53006 * 109.46974 * 299.99722 * 4 3 2 6 6 C 1.52999 * 109.47000 * 300.00410 * 5 4 3 7 7 C 1.53006 * 109.46626 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.46914 * 174.99639 * 7 6 5 9 9 H 1.07999 * 120.00165 * 0.02562 * 8 7 6 10 10 C 1.37873 * 120.00194 * 179.97438 * 8 7 6 11 11 N 1.31520 * 120.00463 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 119.99963 * 0.02562 * 10 8 7 13 13 H 1.48489 * 109.47043 * 89.99782 * 12 10 8 14 14 H 1.48496 * 109.47157 * 210.00520 * 12 10 8 15 15 H 1.48504 * 109.46658 * 330.00196 * 12 10 8 16 16 C 1.52997 * 109.47592 * 59.99968 * 6 5 4 17 17 C 1.52996 * 109.46975 * 300.00042 * 16 6 5 18 18 H 1.09002 * 109.47308 * 179.97438 * 1 2 3 19 19 H 1.09004 * 109.46784 * 299.99719 * 1 2 3 20 20 H 1.09004 * 109.46897 * 59.99809 * 1 2 3 21 21 H 1.09002 * 109.47063 * 330.00242 * 3 2 1 22 22 H 1.09000 * 109.47140 * 180.02562 * 4 3 2 23 23 H 1.09001 * 109.46922 * 59.99816 * 4 3 2 24 24 H 1.08993 * 109.46765 * 179.97438 * 5 4 3 25 25 H 1.09000 * 109.46866 * 60.00225 * 5 4 3 26 26 H 1.09000 * 109.47160 * 299.99635 * 6 5 4 27 27 H 1.08995 * 109.46794 * 294.99833 * 7 6 5 28 28 H 1.09000 * 109.47314 * 54.99967 * 7 6 5 29 29 H 0.96994 * 119.99914 * 180.02562 * 11 10 8 30 30 H 1.09000 * 109.47140 * 59.99654 * 16 6 5 31 31 H 1.09001 * 109.47375 * 179.97438 * 16 6 5 32 32 H 1.09004 * 109.47368 * 299.99783 * 17 16 6 33 33 H 1.08996 * 109.47261 * 180.02562 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3589 1.2631 -0.7213 5 6 4.2928 0.2891 0.0000 6 6 4.5001 0.7549 1.4425 7 6 5.4345 -0.2188 2.1635 8 6 5.7369 0.3043 3.5441 9 1 5.3055 1.2377 3.8743 10 6 6.5634 -0.4092 4.3859 11 7 6.8270 0.0471 5.5909 12 14 7.3090 -2.0240 3.8150 13 1 8.6155 -1.7616 3.1598 14 1 7.5119 -2.9164 4.9844 15 1 6.3921 -2.6775 2.8468 16 6 3.1515 0.7972 2.1638 17 6 2.2177 1.7712 1.4425 18 1 -0.3634 -1.0277 -0.0005 19 1 -0.3633 0.5138 0.8901 20 1 -0.3633 0.5139 -0.8900 21 1 1.3451 1.9993 -0.5138 22 1 3.8025 2.2588 -0.7209 23 1 3.2111 0.9312 -1.7489 24 1 5.2533 0.2587 -0.5141 25 1 3.8494 -0.7067 0.0000 26 1 4.9435 1.7507 1.4425 27 1 4.9531 -1.1936 2.2417 28 1 6.3627 -0.3161 1.6005 29 1 7.4088 -0.4547 6.1830 30 1 2.7081 -0.1986 2.1637 31 1 3.2993 1.1287 3.1916 32 1 2.6611 2.7670 1.4425 33 1 1.2571 1.8017 1.9566 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261124780.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:00 Heat of formation + Delta-G solvation = -96.732359 kcal Electronic energy + Delta-G solvation = -13173.887598 eV Core-core repulsion = 11004.624910 eV Total energy + Delta-G solvation = -2169.262688 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.30303 -37.46607 -34.92587 -32.69308 -31.60518 -28.87258 -27.22096 -24.61741 -23.42779 -21.62733 -20.41119 -18.86034 -17.11889 -16.75263 -16.34393 -16.18762 -15.22255 -14.84693 -14.46300 -14.33567 -13.94879 -13.69133 -13.21627 -13.04798 -12.86848 -12.37507 -12.13989 -12.06741 -11.90702 -11.74799 -11.50972 -11.18062 -10.89953 -10.76159 -10.65294 -10.22971 -8.26916 -6.28606 1.33982 1.36163 1.48767 2.37237 3.00342 3.08211 3.89946 3.93136 4.03059 4.34661 4.41860 4.49400 4.56976 4.63874 4.71185 4.73720 4.77317 4.87367 4.96873 5.08716 5.19652 5.23915 5.25878 5.38073 5.40512 5.50597 5.61916 5.77656 5.83195 6.34341 6.44370 6.78398 7.35028 8.89831 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.051683 B = 0.008801 C = 0.008587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.637066 B = 3180.740549 C = 3259.821622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.403 6.403 3 C 0.092 3.908 4 C -0.110 4.110 5 C -0.107 4.107 6 C -0.070 4.070 7 C -0.008 4.008 8 C -0.518 4.518 9 H 0.035 0.965 10 C 0.001 3.999 11 N -0.954 5.954 12 Si 0.947 3.053 13 H -0.266 1.266 14 H -0.284 1.284 15 H -0.252 1.252 16 C -0.093 4.093 17 C -0.137 4.137 18 H 0.089 0.911 19 H 0.041 0.959 20 H 0.056 0.944 21 H 0.082 0.918 22 H 0.084 0.916 23 H 0.079 0.921 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.010 0.990 28 H 0.014 0.986 29 H 0.264 0.736 30 H 0.046 0.954 31 H 0.034 0.966 32 H 0.074 0.926 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.002 1.139 -14.174 17.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.323 6.323 3 C 0.034 3.966 4 C -0.148 4.148 5 C -0.144 4.144 6 C -0.088 4.088 7 C -0.045 4.045 8 C -0.556 4.556 9 H 0.053 0.947 10 C -0.195 4.195 11 N -0.595 5.595 12 Si 0.771 3.229 13 H -0.191 1.191 14 H -0.210 1.210 15 H -0.176 1.176 16 C -0.131 4.131 17 C -0.174 4.174 18 H 0.107 0.893 19 H 0.059 0.941 20 H 0.074 0.926 21 H 0.100 0.900 22 H 0.103 0.897 23 H 0.098 0.902 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.028 0.972 28 H 0.032 0.968 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.093 0.907 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.809 0.937 -14.028 17.734 hybrid contribution 0.407 -0.390 0.706 0.903 sum -10.402 0.547 -13.322 16.911 Atomic orbital electron populations 1.22922 0.80414 1.03302 1.00525 1.87940 1.20644 1.28635 1.95069 1.22181 0.95164 0.84482 0.94738 1.21646 0.93634 1.00419 0.99064 1.21475 0.99132 0.99384 0.94442 1.20943 0.95056 0.98305 0.94530 1.19592 0.95193 0.95680 0.94049 1.21493 1.27794 1.07217 0.99135 0.94652 1.25992 0.96895 1.01783 0.94815 1.70070 1.39084 1.41251 1.09093 0.85703 0.79492 0.79492 0.78255 1.19068 1.20968 1.17590 1.21240 0.94911 0.99030 0.97921 1.22038 0.99420 0.99211 0.96752 0.89252 0.94076 0.92553 0.90002 0.89718 0.90191 0.92061 0.92797 0.93059 0.97200 0.96781 0.92678 0.93533 0.94748 0.90715 0.91710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 10.82 113.37 1.23 1.72 16 2 O -0.40 -11.26 9.00 -148.98 -1.34 -12.60 16 3 C 0.09 2.32 2.92 30.59 0.09 2.41 16 4 C -0.11 -2.80 5.66 30.60 0.17 -2.63 16 5 C -0.11 -3.52 5.06 30.60 0.15 -3.36 16 6 C -0.07 -2.85 2.14 -10.79 -0.02 -2.88 16 7 C -0.01 -0.39 3.52 29.85 0.10 -0.28 16 8 C -0.52 -30.94 8.96 25.60 0.23 -30.71 16 9 H 0.04 2.30 7.30 -2.91 -0.02 2.28 16 10 C 0.00 0.07 5.47 84.65 0.46 0.53 16 11 N -0.95 -61.56 13.96 21.45 0.30 -61.26 16 12 Si 0.95 46.31 27.47 68.60 1.88 48.19 16 13 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 14 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 15 H -0.25 -11.71 6.54 99.48 0.65 -11.05 16 16 C -0.09 -3.69 4.87 30.59 0.15 -3.54 16 17 C -0.14 -4.03 5.63 30.59 0.17 -3.86 16 18 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 19 H 0.04 0.79 7.87 -2.38 -0.02 0.77 16 20 H 0.06 0.88 8.09 -2.38 -0.02 0.86 16 21 H 0.08 1.60 7.79 -2.39 -0.02 1.58 16 22 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 23 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.05 1.89 7.68 -2.39 -0.02 1.87 16 26 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.01 0.49 7.20 -2.39 -0.02 0.47 16 28 H 0.01 0.67 7.57 -2.39 -0.02 0.66 16 29 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 30 H 0.05 1.92 7.68 -2.39 -0.02 1.90 16 31 H 0.03 1.56 6.95 -2.39 -0.02 1.55 16 32 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.06 1.76 7.87 -2.39 -0.02 1.74 16 Total: -1.00 -68.34 259.38 4.57 -63.77 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: 0.99 Total: 4.50 kcal Atomic # 6 Polarization: -45.34 SS G_CDS: 2.74 Total: -42.60 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: 0.30 Total: -61.26 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: -1.34 Total: -12.60 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 1.88 Total: 48.19 kcal Total: -68.34 4.57 -63.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261124780.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.963 kcal (2) G-P(sol) polarization free energy of solvation -68.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds