Wall clock time and date at job start Mon Mar 30 2020 02:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47279 * 2 1 4 4 H 1.09002 * 109.47103 * 304.99792 * 3 2 1 5 5 C 1.52997 * 109.47482 * 65.00040 * 3 2 1 6 6 C 1.52999 * 109.46961 * 185.00400 * 3 2 1 7 7 C 1.50705 * 110.45465 * 302.59976 * 6 3 2 8 8 H 1.07993 * 119.99873 * 0.02562 * 7 6 3 9 9 C 1.37878 * 119.99981 * 179.97438 * 7 6 3 10 10 N 1.31516 * 120.00201 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00003 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46894 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46862 * 119.99959 * 11 9 7 14 14 H 1.48495 * 109.47429 * 240.00698 * 11 9 7 15 15 C 1.54508 * 110.51348 * 180.02562 * 6 3 2 16 16 C 1.54482 * 104.06482 * 241.35198 * 15 6 3 17 17 O 1.44423 * 104.79989 * 23.97480 * 16 15 6 18 18 C 1.44424 * 105.27838 * 319.49184 * 17 16 15 19 19 H 1.09000 * 109.47104 * 59.99686 * 1 2 3 20 20 H 1.08993 * 109.47832 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46924 * 300.00271 * 1 2 3 22 22 H 1.08996 * 109.46511 * 239.99535 * 2 1 3 23 23 H 1.09001 * 109.46580 * 120.00304 * 2 1 3 24 24 H 1.09002 * 109.47153 * 59.99783 * 5 3 2 25 25 H 1.09001 * 109.46832 * 299.99974 * 5 3 2 26 26 H 1.09004 * 109.47261 * 179.97438 * 5 3 2 27 27 H 0.96997 * 119.99739 * 179.97438 * 10 9 7 28 28 H 1.09003 * 110.50924 * 359.97438 * 15 6 3 29 29 H 1.08998 * 110.51733 * 122.56733 * 15 6 3 30 30 H 1.09000 * 110.37496 * 142.80632 * 16 15 6 31 31 H 1.08997 * 110.37025 * 265.14762 * 16 15 6 32 32 H 1.08998 * 110.37047 * 281.68119 * 18 17 16 33 33 H 1.08999 * 110.37775 * 159.34656 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5648 1.4442 -0.1258 7 6 4.1866 0.6497 0.9938 8 1 3.5584 0.1797 1.7359 9 6 5.5573 0.5221 1.0700 10 7 6.3223 1.0941 0.1659 11 14 6.3280 -0.4620 2.4581 12 1 5.2584 -0.9995 3.3370 13 1 7.1136 -1.5871 1.8904 14 1 7.2245 0.4178 3.2502 15 6 4.1063 2.8912 -0.1276 16 6 4.8000 3.0308 -1.5009 17 8 4.1613 2.0431 -2.3389 18 6 3.9954 0.8806 -1.4981 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8932 -0.5139 -0.8899 23 1 1.8932 -0.5139 0.8900 24 1 2.0699 1.5875 2.1491 25 1 0.5490 2.1253 1.3968 26 1 1.9991 3.1541 1.3075 27 1 7.2866 1.0045 0.2198 28 1 3.2876 3.6055 -0.0393 29 1 4.8236 3.0318 0.6809 30 1 4.6428 4.0306 -1.9056 31 1 5.8656 2.8202 -1.4108 32 1 4.9377 0.3402 -1.4076 33 1 3.2203 0.2285 -1.9007 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261126080.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:50 Heat of formation + Delta-G solvation = -65.206937 kcal Electronic energy + Delta-G solvation = -13863.614209 eV Core-core repulsion = 11695.718566 eV Total energy + Delta-G solvation = -2167.895643 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.62898 -35.26922 -32.74881 -30.36790 -28.15138 -27.64587 -24.74893 -23.46621 -21.37897 -19.97639 -18.61758 -16.02062 -15.23326 -14.61653 -14.05558 -13.89360 -13.61041 -13.27477 -12.57119 -12.07700 -11.84204 -11.55048 -11.17932 -10.95465 -10.85744 -10.69623 -10.54951 -10.26766 -10.11500 -9.94913 -9.82994 -9.30399 -8.79249 -8.61894 -8.37199 -8.17054 -5.99515 -4.08339 3.26422 3.35842 3.38657 4.39650 5.23436 5.46888 5.65974 5.74229 5.85060 6.12242 6.20359 6.29561 6.38674 6.46246 6.52562 6.63504 6.73012 6.79218 6.84780 6.97752 7.03408 7.15672 7.22283 7.26409 7.33124 7.46596 7.64404 7.82093 7.95107 8.14885 8.55687 8.94320 9.55313 11.01310 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.027945 B = 0.017283 C = 0.012832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.714592 B = 1619.717441 C = 2181.526676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.070 4.070 4 H 0.044 0.956 5 C -0.136 4.136 6 C 0.050 3.950 7 C -0.495 4.495 8 H 0.061 0.939 9 C 0.061 3.939 10 N -0.883 5.883 11 Si 0.888 3.112 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.286 1.286 15 C -0.122 4.122 16 C 0.061 3.939 17 O -0.409 6.409 18 C 0.057 3.943 19 H 0.044 0.956 20 H 0.042 0.958 21 H 0.050 0.950 22 H 0.055 0.945 23 H 0.067 0.933 24 H 0.059 0.941 25 H 0.032 0.968 26 H 0.045 0.955 27 H 0.259 0.741 28 H 0.031 0.969 29 H 0.072 0.928 30 H 0.046 0.954 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.516 0.493 0.392 5.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.089 4.089 4 H 0.063 0.937 5 C -0.193 4.193 6 C 0.050 3.950 7 C -0.533 4.533 8 H 0.079 0.921 9 C -0.140 4.140 10 N -0.522 5.522 11 Si 0.716 3.284 12 H -0.199 1.199 13 H -0.212 1.212 14 H -0.212 1.212 15 C -0.161 4.161 16 C -0.016 4.016 17 O -0.329 6.329 18 C -0.020 4.020 19 H 0.064 0.936 20 H 0.061 0.939 21 H 0.069 0.931 22 H 0.074 0.926 23 H 0.086 0.914 24 H 0.078 0.922 25 H 0.051 0.949 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.049 0.951 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.383 0.532 0.131 5.411 hybrid contribution 0.660 -0.514 0.963 1.275 sum -4.723 0.018 1.094 4.848 Atomic orbital electron populations 1.21875 0.97879 1.00195 1.00981 1.21540 0.93230 0.97916 1.02277 1.21050 0.97302 0.94423 0.96091 0.93710 1.21801 0.98216 1.00299 0.98946 1.19418 0.89565 0.92251 0.93815 1.21119 0.91021 1.31368 1.09838 0.92099 1.24977 0.97450 0.95689 0.95896 1.69974 1.04377 1.43776 1.34055 0.86600 0.79331 0.79972 0.82477 1.19879 1.21190 1.21221 1.22814 0.98114 0.97739 0.97401 1.23206 0.98479 0.89687 0.90241 1.88803 1.81119 1.25803 1.37152 1.23662 1.00486 0.87691 0.90122 0.93640 0.93911 0.93118 0.92597 0.91409 0.92173 0.94856 0.93569 0.93124 0.95073 0.90902 0.93524 0.90997 0.90383 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.67 37.16 0.36 -1.99 16 2 C -0.11 -2.11 4.91 -26.73 -0.13 -2.24 16 3 C -0.07 -1.44 1.59 -90.63 -0.14 -1.58 16 4 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 5 C -0.14 -2.55 8.49 37.16 0.32 -2.24 16 6 C 0.05 1.18 0.28 -154.09 -0.04 1.13 16 7 C -0.50 -12.51 6.70 -34.44 -0.23 -12.74 16 8 H 0.06 1.54 5.85 -52.49 -0.31 1.23 16 9 C 0.06 1.58 4.69 -17.82 -0.08 1.50 16 10 N -0.88 -23.50 8.71 55.43 0.48 -23.02 16 11 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 13 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 14 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 15 C -0.12 -2.87 5.10 -25.16 -0.13 -3.00 16 16 C 0.06 1.41 7.21 37.94 0.27 1.68 16 17 O -0.41 -10.16 11.65 -35.23 -0.41 -10.57 16 18 C 0.06 1.39 6.16 37.93 0.23 1.63 16 19 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 20 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.05 0.75 6.56 -51.93 -0.34 0.41 16 22 H 0.06 1.08 6.29 -51.93 -0.33 0.75 16 23 H 0.07 1.34 6.73 -51.93 -0.35 0.99 16 24 H 0.06 1.19 6.87 -51.93 -0.36 0.83 16 25 H 0.03 0.54 6.56 -51.93 -0.34 0.20 16 26 H 0.05 0.86 6.52 -51.93 -0.34 0.53 16 27 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 28 H 0.03 0.67 6.44 -51.93 -0.33 0.34 16 29 H 0.07 1.84 6.99 -51.93 -0.36 1.48 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.07 1.79 6.89 -51.93 -0.36 1.43 16 32 H 0.08 2.11 6.08 -51.93 -0.32 1.79 16 33 H 0.05 1.17 6.11 -51.93 -0.32 0.85 16 LS Contribution 244.79 15.07 3.69 3.69 Total: -1.00 -26.31 244.79 -5.71 -32.03 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -4.87 Total: 0.30 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: 0.42 Total: -17.85 kcal Atomic # 7 Polarization: -23.50 SS G_CDS: 0.48 Total: -23.02 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -0.41 Total: -10.57 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -26.31 -5.71 -32.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261126080.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.181 kcal (2) G-P(sol) polarization free energy of solvation -26.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds