Wall clock time and date at job start Mon Mar 30 2020 02:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47279 * 2 1 4 4 H 1.09002 * 109.47103 * 304.99792 * 3 2 1 5 5 C 1.52997 * 109.47482 * 65.00040 * 3 2 1 6 6 C 1.52999 * 109.46961 * 185.00400 * 3 2 1 7 7 C 1.50705 * 110.45465 * 302.59976 * 6 3 2 8 8 H 1.07993 * 119.99873 * 0.02562 * 7 6 3 9 9 C 1.37878 * 119.99981 * 179.97438 * 7 6 3 10 10 N 1.31516 * 120.00201 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00003 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46894 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46862 * 119.99959 * 11 9 7 14 14 H 1.48495 * 109.47429 * 240.00698 * 11 9 7 15 15 C 1.54508 * 110.51348 * 180.02562 * 6 3 2 16 16 C 1.54482 * 104.06482 * 241.35198 * 15 6 3 17 17 O 1.44423 * 104.79989 * 23.97480 * 16 15 6 18 18 C 1.44424 * 105.27838 * 319.49184 * 17 16 15 19 19 H 1.09000 * 109.47104 * 59.99686 * 1 2 3 20 20 H 1.08993 * 109.47832 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46924 * 300.00271 * 1 2 3 22 22 H 1.08996 * 109.46511 * 239.99535 * 2 1 3 23 23 H 1.09001 * 109.46580 * 120.00304 * 2 1 3 24 24 H 1.09002 * 109.47153 * 59.99783 * 5 3 2 25 25 H 1.09001 * 109.46832 * 299.99974 * 5 3 2 26 26 H 1.09004 * 109.47261 * 179.97438 * 5 3 2 27 27 H 0.96997 * 119.99739 * 179.97438 * 10 9 7 28 28 H 1.09003 * 110.50924 * 359.97438 * 15 6 3 29 29 H 1.08998 * 110.51733 * 122.56733 * 15 6 3 30 30 H 1.09000 * 110.37496 * 142.80632 * 16 15 6 31 31 H 1.08997 * 110.37025 * 265.14762 * 16 15 6 32 32 H 1.08998 * 110.37047 * 281.68119 * 18 17 16 33 33 H 1.08999 * 110.37775 * 159.34656 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5648 1.4442 -0.1258 7 6 4.1866 0.6497 0.9938 8 1 3.5584 0.1797 1.7359 9 6 5.5573 0.5221 1.0700 10 7 6.3223 1.0941 0.1659 11 14 6.3280 -0.4620 2.4581 12 1 5.2584 -0.9995 3.3370 13 1 7.1136 -1.5871 1.8904 14 1 7.2245 0.4178 3.2502 15 6 4.1063 2.8912 -0.1276 16 6 4.8000 3.0308 -1.5009 17 8 4.1613 2.0431 -2.3389 18 6 3.9954 0.8806 -1.4981 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8932 -0.5139 -0.8899 23 1 1.8932 -0.5139 0.8900 24 1 2.0699 1.5875 2.1491 25 1 0.5490 2.1253 1.3968 26 1 1.9991 3.1541 1.3075 27 1 7.2866 1.0045 0.2198 28 1 3.2876 3.6055 -0.0393 29 1 4.8236 3.0318 0.6809 30 1 4.6428 4.0306 -1.9056 31 1 5.8656 2.8202 -1.4108 32 1 4.9377 0.3402 -1.4076 33 1 3.2203 0.2285 -1.9007 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261126080.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:49 Heat of formation + Delta-G solvation = -79.861035 kcal Electronic energy + Delta-G solvation = -13864.249658 eV Core-core repulsion = 11695.718566 eV Total energy + Delta-G solvation = -2168.531092 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.47330 -36.96506 -34.64236 -32.08938 -29.91843 -29.32996 -26.72241 -24.98914 -23.22652 -21.67108 -20.42235 -17.93015 -17.06956 -16.49651 -15.88959 -15.58090 -15.37048 -14.97924 -14.12161 -13.86356 -13.39843 -13.18833 -12.95202 -12.66766 -12.56089 -12.32451 -12.28791 -12.02913 -11.90322 -11.67205 -11.58100 -10.97466 -10.54049 -10.48001 -10.33047 -10.12132 -7.97378 -6.10144 1.41520 1.46839 1.54549 2.47465 3.24709 3.57964 4.17447 4.29357 4.30163 4.56782 4.61966 4.71250 4.80046 4.87824 4.93900 5.01618 5.16994 5.18933 5.23188 5.29861 5.33707 5.40627 5.50063 5.51762 5.67295 5.69121 5.75895 5.92721 6.04478 6.23633 6.59946 6.98231 7.55148 9.01910 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.027945 B = 0.017283 C = 0.012832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.714592 B = 1619.717441 C = 2181.526676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 C -0.069 4.069 4 H 0.045 0.955 5 C -0.129 4.129 6 C 0.043 3.957 7 C -0.498 4.498 8 H 0.058 0.942 9 C 0.019 3.981 10 N -0.903 5.903 11 Si 0.941 3.059 12 H -0.269 1.269 13 H -0.289 1.289 14 H -0.288 1.288 15 C -0.117 4.117 16 C 0.060 3.940 17 O -0.417 6.417 18 C 0.059 3.941 19 H 0.052 0.948 20 H 0.058 0.942 21 H 0.059 0.941 22 H 0.045 0.955 23 H 0.053 0.947 24 H 0.045 0.955 25 H 0.061 0.939 26 H 0.043 0.957 27 H 0.255 0.745 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.026 0.583 0.780 7.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.147 4.147 3 C -0.088 4.088 4 H 0.064 0.936 5 C -0.186 4.186 6 C 0.043 3.957 7 C -0.536 4.536 8 H 0.077 0.923 9 C -0.180 4.180 10 N -0.542 5.542 11 Si 0.769 3.231 12 H -0.194 1.194 13 H -0.216 1.216 14 H -0.214 1.214 15 C -0.155 4.155 16 C -0.016 4.016 17 O -0.337 6.337 18 C -0.018 4.018 19 H 0.072 0.928 20 H 0.077 0.923 21 H 0.078 0.922 22 H 0.064 0.936 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.080 0.920 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.902 0.620 0.525 6.949 hybrid contribution 1.141 -0.537 0.813 1.501 sum -5.761 0.083 1.338 5.915 Atomic orbital electron populations 1.21800 0.94934 1.01631 1.01821 1.21477 0.95808 0.96416 1.01039 1.21019 0.94927 0.95808 0.97003 0.93622 1.21728 0.99989 0.99593 0.97306 1.19495 0.91847 0.91840 0.92548 1.21322 0.91077 1.31153 1.10095 0.92341 1.25563 0.98099 0.96693 0.97634 1.70095 1.04195 1.44761 1.35189 0.85762 0.78448 0.78582 0.80311 1.19360 1.21550 1.21438 1.22719 0.98032 0.98288 0.96503 1.23231 0.97251 0.90710 0.90419 1.88785 1.81121 1.26068 1.37705 1.23575 0.99368 0.87741 0.91077 0.92844 0.92297 0.92163 0.93647 0.92847 0.93563 0.92007 0.93789 0.93529 0.93213 0.93309 0.90549 0.93066 0.93414 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 9.67 71.98 0.70 -3.31 16 2 C -0.11 -3.93 4.91 30.59 0.15 -3.78 16 3 C -0.07 -2.70 1.59 -10.80 -0.02 -2.72 16 4 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 5 C -0.13 -4.56 8.49 71.98 0.61 -3.95 16 6 C 0.04 2.01 0.28 -51.91 -0.01 1.99 16 7 C -0.50 -25.07 6.70 25.60 0.17 -24.89 16 8 H 0.06 2.93 5.85 -2.91 -0.02 2.91 16 9 C 0.02 0.99 4.69 84.65 0.40 1.39 16 10 N -0.90 -48.77 8.71 21.45 0.19 -48.58 16 11 Si 0.94 42.15 29.54 68.60 2.03 44.17 16 12 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 13 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 14 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 15 C -0.12 -5.41 5.10 31.61 0.16 -5.25 16 16 C 0.06 2.78 7.21 72.49 0.52 3.30 16 17 O -0.42 -20.42 11.65 -148.98 -1.74 -22.16 16 18 C 0.06 2.88 6.16 72.48 0.45 3.33 16 19 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 20 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 21 H 0.06 1.55 6.56 -2.39 -0.02 1.54 16 22 H 0.04 1.69 6.29 -2.39 -0.02 1.67 16 23 H 0.05 2.04 6.73 -2.39 -0.02 2.03 16 24 H 0.05 1.75 6.87 -2.39 -0.02 1.73 16 25 H 0.06 1.81 6.56 -2.39 -0.02 1.80 16 26 H 0.04 1.54 6.52 -2.38 -0.02 1.53 16 27 H 0.26 13.45 8.31 -92.71 -0.77 12.68 16 28 H 0.05 2.07 6.44 -2.39 -0.02 2.05 16 29 H 0.05 2.46 6.99 -2.39 -0.02 2.45 16 30 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 31 H 0.05 2.57 6.89 -2.39 -0.02 2.55 16 32 H 0.05 2.63 6.08 -2.39 -0.01 2.61 16 33 H 0.06 2.89 6.11 -2.39 -0.01 2.87 16 Total: -1.00 -54.70 244.79 4.68 -50.02 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 1.08 Total: 10.44 kcal Atomic # 6 Polarization: -37.01 SS G_CDS: 3.12 Total: -33.88 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: 0.19 Total: -48.58 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -1.74 Total: -22.16 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -54.70 4.68 -50.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261126080.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.845 kcal (2) G-P(sol) polarization free energy of solvation -54.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds