Wall clock time and date at job start Mon Mar 30 2020 02:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46852 * 2 1 4 4 H 1.08994 * 109.47105 * 55.00025 * 3 2 1 5 5 C 1.52996 * 109.47010 * 294.99647 * 3 2 1 6 6 C 1.53005 * 109.46892 * 174.99587 * 3 2 1 7 7 C 1.50699 * 110.43202 * 61.09243 * 6 3 2 8 8 H 1.07996 * 120.00678 * 2.02282 * 7 6 3 9 9 C 1.37879 * 119.99770 * 182.02351 * 7 6 3 10 10 N 1.31518 * 120.00021 * 230.43882 * 9 7 6 11 11 Si 1.86801 * 119.99890 * 50.44007 * 9 7 6 12 12 H 1.48495 * 109.47302 * 58.78065 * 11 9 7 13 13 H 1.48504 * 109.47187 * 178.77840 * 11 9 7 14 14 H 1.48502 * 109.47072 * 298.77589 * 11 9 7 15 15 C 1.54809 * 110.48574 * 183.77752 * 6 3 2 16 16 C 1.54992 * 102.08961 * 139.56018 * 15 6 3 17 17 O 1.44377 * 103.49372 * 322.97646 * 16 15 6 18 18 C 1.43742 * 106.97352 * 40.05986 * 17 16 15 19 19 H 1.09006 * 109.46995 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.47408 * 299.99781 * 1 2 3 21 21 H 1.09002 * 109.47129 * 60.00451 * 1 2 3 22 22 H 1.09000 * 109.47867 * 239.99950 * 2 1 3 23 23 H 1.09002 * 109.47129 * 119.99549 * 2 1 3 24 24 H 1.09005 * 109.47056 * 299.99975 * 5 3 2 25 25 H 1.09000 * 109.46884 * 60.00062 * 5 3 2 26 26 H 1.09001 * 109.47179 * 180.02562 * 5 3 2 27 27 H 0.97005 * 119.99816 * 179.97438 * 10 9 7 28 28 H 1.08999 * 110.90821 * 21.36209 * 15 6 3 29 29 H 1.09005 * 110.90908 * 257.75835 * 15 6 3 30 30 H 1.09005 * 110.61861 * 204.47574 * 16 15 6 31 31 H 1.09000 * 110.62288 * 81.48313 * 16 15 6 32 32 H 1.09000 * 109.87713 * 92.91282 * 18 17 16 33 33 H 1.09001 * 109.87896 * 213.91522 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4444 0.1258 7 6 4.1899 0.7268 -1.0426 8 1 3.5658 0.3310 -1.8300 9 6 5.5589 0.5754 -1.1062 10 7 6.2075 0.9114 -2.1999 11 14 6.4924 -0.1068 0.3609 12 1 5.9747 -1.4587 0.6919 13 1 7.9372 -0.1976 0.0297 14 1 6.3076 0.7934 1.5274 15 6 4.0986 2.8943 0.2235 16 6 5.2084 2.7600 1.2971 17 8 4.6606 1.8039 2.2300 18 6 3.9973 0.7924 1.4534 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 2.0699 1.5875 -2.1492 25 1 0.5489 2.1252 -1.3969 26 1 1.9989 3.1541 -1.3076 27 1 7.1707 0.8053 -2.2446 28 1 3.3156 3.5755 0.5565 29 1 4.5164 3.2200 -0.7292 30 1 5.3854 3.7170 1.7879 31 1 6.1281 2.3793 0.8530 32 1 4.6826 -0.0318 1.2556 33 1 3.1228 0.4262 1.9912 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261126081.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:51 Heat of formation + Delta-G solvation = -36.291076 kcal Electronic energy + Delta-G solvation = -13958.331639 eV Core-core repulsion = 11791.689882 eV Total energy + Delta-G solvation = -2166.641757 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.12327 -35.60722 -32.77162 -30.83932 -28.56042 -28.05630 -24.68864 -23.58646 -22.06897 -20.18304 -18.65616 -16.25580 -16.03892 -15.07072 -14.36500 -14.11851 -13.63426 -13.41921 -12.85027 -12.21491 -12.00572 -11.79742 -11.55389 -11.17481 -10.87900 -10.77820 -10.48501 -10.35797 -10.22942 -9.97903 -9.60631 -9.44655 -9.09268 -9.02802 -8.43296 -7.88593 -6.44660 -3.94285 3.36646 3.46384 3.56166 4.43535 4.80227 5.01646 5.55583 5.67676 5.69664 5.95177 6.00928 6.07097 6.19446 6.25932 6.29260 6.35014 6.48815 6.54896 6.60939 6.66718 6.75514 6.86368 6.88726 6.98976 7.10893 7.17992 7.32175 7.41496 7.78239 7.84385 8.51261 8.97621 9.49951 10.65194 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.034002 B = 0.016645 C = 0.015169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.280703 B = 1681.742089 C = 1845.479707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.062 4.062 4 H 0.044 0.956 5 C -0.134 4.134 6 C 0.045 3.955 7 C -0.562 4.562 8 H 0.078 0.922 9 C 0.120 3.880 10 N -0.820 5.820 11 Si 0.789 3.211 12 H -0.280 1.280 13 H -0.306 1.306 14 H -0.225 1.225 15 C -0.144 4.144 16 C 0.043 3.957 17 O -0.393 6.393 18 C 0.036 3.964 19 H 0.043 0.957 20 H 0.044 0.956 21 H 0.052 0.948 22 H 0.072 0.928 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.033 0.967 26 H 0.044 0.956 27 H 0.265 0.735 28 H 0.047 0.953 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.046 0.954 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.000 1.626 3.803 7.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.080 4.080 4 H 0.063 0.937 5 C -0.191 4.191 6 C 0.044 3.956 7 C -0.595 4.595 8 H 0.095 0.905 9 C -0.090 4.090 10 N -0.449 5.449 11 Si 0.616 3.384 12 H -0.207 1.207 13 H -0.235 1.235 14 H -0.149 1.149 15 C -0.182 4.182 16 C -0.033 4.033 17 O -0.312 6.312 18 C -0.040 4.040 19 H 0.062 0.938 20 H 0.063 0.937 21 H 0.071 0.929 22 H 0.090 0.910 23 H 0.072 0.928 24 H 0.085 0.915 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.827 1.681 3.867 7.192 hybrid contribution 0.801 -0.661 0.540 1.170 sum -5.026 1.021 4.406 6.762 Atomic orbital electron populations 1.21869 0.97643 1.00355 1.01052 1.21559 0.93465 0.97681 1.02477 1.20948 0.95767 0.94751 0.96569 0.93737 1.21766 0.98139 1.00295 0.98863 1.19558 0.91871 0.91576 0.92604 1.20332 0.90947 1.41894 1.06345 0.90460 1.24833 0.97215 0.92794 0.94172 1.70580 1.08875 1.34827 1.30630 0.88763 0.77734 0.82784 0.89151 1.20742 1.23462 1.14887 1.23361 0.96844 0.99247 0.98769 1.23567 0.97591 0.91507 0.90660 1.88691 1.73021 1.37827 1.31681 1.23870 0.94965 0.91292 0.93848 0.93794 0.93678 0.92916 0.90951 0.92820 0.91490 0.94847 0.93655 0.92542 0.93445 0.90200 0.91182 0.92421 0.93692 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.67 37.16 0.36 -1.90 16 2 C -0.11 -2.08 4.92 -26.73 -0.13 -2.21 16 3 C -0.06 -1.20 1.46 -90.62 -0.13 -1.34 16 4 H 0.04 0.83 8.13 -51.93 -0.42 0.41 16 5 C -0.13 -2.48 8.51 37.16 0.32 -2.16 16 6 C 0.05 1.02 0.32 -154.13 -0.05 0.97 16 7 C -0.56 -14.55 6.99 -34.44 -0.24 -14.79 16 8 H 0.08 2.13 6.09 -52.49 -0.32 1.81 16 9 C 0.12 3.25 4.74 -17.82 -0.08 3.16 16 10 N -0.82 -23.10 13.96 55.43 0.77 -22.32 16 11 Si 0.79 19.86 22.78 -169.99 -3.87 15.99 16 12 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.31 -7.88 7.11 56.52 0.40 -7.48 16 14 H -0.22 -5.52 3.67 56.52 0.21 -5.31 16 15 C -0.14 -3.12 5.05 -24.73 -0.12 -3.25 16 16 C 0.04 0.93 6.75 38.21 0.26 1.19 16 17 O -0.39 -9.12 10.40 -35.23 -0.37 -9.48 16 18 C 0.04 0.83 5.53 37.73 0.21 1.03 16 19 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 20 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 21 H 0.05 0.75 6.57 -51.93 -0.34 0.41 16 22 H 0.07 1.43 6.98 -51.93 -0.36 1.07 16 23 H 0.05 0.98 6.41 -51.93 -0.33 0.64 16 24 H 0.07 1.37 6.59 -51.93 -0.34 1.03 16 25 H 0.03 0.53 6.56 -51.93 -0.34 0.19 16 26 H 0.04 0.83 7.31 -51.93 -0.38 0.45 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.05 0.93 7.75 -51.93 -0.40 0.53 16 29 H 0.08 1.85 7.86 -51.93 -0.41 1.44 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.06 1.34 4.89 -51.93 -0.25 1.08 16 32 H 0.05 1.11 2.93 -51.93 -0.15 0.96 16 33 H 0.07 1.37 6.38 -51.93 -0.33 1.03 16 LS Contribution 236.15 15.07 3.56 3.56 Total: -1.00 -27.54 236.15 -4.51 -32.05 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -4.99 Total: -0.51 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: 0.38 Total: -19.28 kcal Atomic # 7 Polarization: -23.10 SS G_CDS: 0.77 Total: -22.32 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -0.37 Total: -9.48 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -3.87 Total: 15.99 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -27.54 -4.51 -32.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261126081.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.239 kcal (2) G-P(sol) polarization free energy of solvation -27.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds