Wall clock time and date at job start Mon Mar 30 2020 02:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46852 * 2 1 4 4 H 1.08994 * 109.47105 * 55.00025 * 3 2 1 5 5 C 1.52996 * 109.47010 * 294.99647 * 3 2 1 6 6 C 1.53005 * 109.46892 * 174.99587 * 3 2 1 7 7 C 1.50699 * 110.43202 * 61.09243 * 6 3 2 8 8 H 1.07996 * 120.00678 * 2.02282 * 7 6 3 9 9 C 1.37879 * 119.99770 * 182.02351 * 7 6 3 10 10 N 1.31518 * 120.00021 * 230.43882 * 9 7 6 11 11 Si 1.86801 * 119.99890 * 50.44007 * 9 7 6 12 12 H 1.48495 * 109.47302 * 58.78065 * 11 9 7 13 13 H 1.48504 * 109.47187 * 178.77840 * 11 9 7 14 14 H 1.48502 * 109.47072 * 298.77589 * 11 9 7 15 15 C 1.54809 * 110.48574 * 183.77752 * 6 3 2 16 16 C 1.54992 * 102.08961 * 139.56018 * 15 6 3 17 17 O 1.44377 * 103.49372 * 322.97646 * 16 15 6 18 18 C 1.43742 * 106.97352 * 40.05986 * 17 16 15 19 19 H 1.09006 * 109.46995 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.47408 * 299.99781 * 1 2 3 21 21 H 1.09002 * 109.47129 * 60.00451 * 1 2 3 22 22 H 1.09000 * 109.47867 * 239.99950 * 2 1 3 23 23 H 1.09002 * 109.47129 * 119.99549 * 2 1 3 24 24 H 1.09005 * 109.47056 * 299.99975 * 5 3 2 25 25 H 1.09000 * 109.46884 * 60.00062 * 5 3 2 26 26 H 1.09001 * 109.47179 * 180.02562 * 5 3 2 27 27 H 0.97005 * 119.99816 * 179.97438 * 10 9 7 28 28 H 1.08999 * 110.90821 * 21.36209 * 15 6 3 29 29 H 1.09005 * 110.90908 * 257.75835 * 15 6 3 30 30 H 1.09005 * 110.61861 * 204.47574 * 16 15 6 31 31 H 1.09000 * 110.62288 * 81.48313 * 16 15 6 32 32 H 1.09000 * 109.87713 * 92.91282 * 18 17 16 33 33 H 1.09001 * 109.87896 * 213.91522 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4444 0.1258 7 6 4.1899 0.7268 -1.0426 8 1 3.5658 0.3310 -1.8300 9 6 5.5589 0.5754 -1.1062 10 7 6.2075 0.9114 -2.1999 11 14 6.4924 -0.1068 0.3609 12 1 5.9747 -1.4587 0.6919 13 1 7.9372 -0.1976 0.0297 14 1 6.3076 0.7934 1.5274 15 6 4.0986 2.8943 0.2235 16 6 5.2084 2.7600 1.2971 17 8 4.6606 1.8039 2.2300 18 6 3.9973 0.7924 1.4534 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 2.0699 1.5875 -2.1492 25 1 0.5489 2.1252 -1.3969 26 1 1.9989 3.1541 -1.3076 27 1 7.1707 0.8053 -2.2446 28 1 3.3156 3.5755 0.5565 29 1 4.5164 3.2200 -0.7292 30 1 5.3854 3.7170 1.7879 31 1 6.1281 2.3793 0.8530 32 1 4.6826 -0.0318 1.2556 33 1 3.1228 0.4262 1.9912 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261126081.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:51 Heat of formation + Delta-G solvation = -54.043873 kcal Electronic energy + Delta-G solvation = -13959.101458 eV Core-core repulsion = 11791.689882 eV Total energy + Delta-G solvation = -2167.411576 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.87954 -37.20455 -34.75023 -32.52888 -30.25116 -29.61971 -26.67597 -25.06161 -23.79554 -21.78192 -20.45292 -18.13957 -17.88366 -16.83249 -16.17041 -15.70939 -15.48772 -15.14607 -14.42987 -13.92686 -13.67897 -13.44595 -13.06297 -12.75170 -12.63627 -12.41091 -12.33801 -12.02028 -11.94988 -11.60285 -11.47358 -11.01624 -10.90705 -10.71435 -10.26589 -9.94180 -8.55383 -6.02659 1.32439 1.42309 1.48362 2.34617 2.73956 3.26052 4.06009 4.09629 4.25461 4.35495 4.42635 4.49820 4.60501 4.67579 4.83175 4.91582 4.94028 5.00279 5.06224 5.12807 5.17021 5.27566 5.35643 5.44070 5.49001 5.58564 5.70691 5.81241 5.87231 6.03259 6.52253 6.89701 7.40279 8.58062 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.034002 B = 0.016645 C = 0.015169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.280703 B = 1681.742089 C = 1845.479707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 C -0.062 4.062 4 H 0.064 0.936 5 C -0.127 4.127 6 C 0.037 3.963 7 C -0.555 4.555 8 H 0.052 0.948 9 C 0.086 3.914 10 N -0.858 5.858 11 Si 0.835 3.165 12 H -0.289 1.289 13 H -0.317 1.317 14 H -0.212 1.212 15 C -0.138 4.138 16 C 0.038 3.962 17 O -0.397 6.397 18 C 0.035 3.965 19 H 0.056 0.944 20 H 0.060 0.940 21 H 0.057 0.943 22 H 0.045 0.955 23 H 0.051 0.949 24 H 0.036 0.964 25 H 0.062 0.938 26 H 0.044 0.956 27 H 0.266 0.734 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.105 0.895 31 H 0.038 0.962 32 H 0.026 0.974 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.549 2.340 5.390 9.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 C -0.080 4.080 4 H 0.082 0.918 5 C -0.184 4.184 6 C 0.036 3.964 7 C -0.588 4.588 8 H 0.070 0.930 9 C -0.121 4.121 10 N -0.490 5.490 11 Si 0.663 3.337 12 H -0.217 1.217 13 H -0.246 1.246 14 H -0.136 1.136 15 C -0.176 4.176 16 C -0.038 4.038 17 O -0.317 6.317 18 C -0.041 4.041 19 H 0.075 0.925 20 H 0.079 0.921 21 H 0.076 0.924 22 H 0.064 0.936 23 H 0.069 0.931 24 H 0.056 0.944 25 H 0.081 0.919 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.123 0.877 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.382 2.394 5.472 9.496 hybrid contribution 1.242 -0.886 0.000 1.526 sum -6.140 1.508 5.472 8.362 Atomic orbital electron populations 1.21796 0.94701 1.01654 1.02034 1.21512 0.96060 0.96489 1.01066 1.20969 0.93511 0.95959 0.97581 0.91780 1.21688 0.99872 0.99588 0.97297 1.19639 0.94046 0.91568 0.91137 1.20532 0.90511 1.40959 1.06849 0.92996 1.25261 0.98091 0.93346 0.95398 1.70621 1.09120 1.36987 1.32279 0.88044 0.76055 0.81924 0.87672 1.21691 1.24642 1.13582 1.23254 0.97493 0.98953 0.97915 1.23690 0.96597 0.92642 0.90836 1.88691 1.73054 1.37976 1.31984 1.23841 0.95309 0.90777 0.94143 0.92488 0.92114 0.92418 0.93586 0.93069 0.94445 0.91915 0.93664 0.92476 0.90770 0.92348 0.87665 0.94373 0.95638 0.89374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.67 71.98 0.70 -3.12 16 2 C -0.11 -3.91 4.92 30.60 0.15 -3.76 16 3 C -0.06 -2.25 1.46 -10.79 -0.02 -2.27 16 4 H 0.06 2.13 8.13 -2.39 -0.02 2.11 16 5 C -0.13 -4.49 8.51 71.98 0.61 -3.88 16 6 C 0.04 1.63 0.32 -51.94 -0.02 1.62 16 7 C -0.55 -28.97 6.99 25.60 0.18 -28.79 16 8 H 0.05 2.95 6.09 -2.91 -0.02 2.93 16 9 C 0.09 4.71 4.74 84.65 0.40 5.12 16 10 N -0.86 -49.49 13.96 21.45 0.30 -49.19 16 11 Si 0.84 41.66 22.78 68.60 1.56 43.22 16 12 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 13 H -0.32 -16.23 7.11 99.48 0.71 -15.52 16 14 H -0.21 -10.09 3.67 99.48 0.37 -9.73 16 15 C -0.14 -5.71 5.05 31.89 0.16 -5.55 16 16 C 0.04 1.57 6.75 72.66 0.49 2.06 16 17 O -0.40 -17.30 10.40 -148.98 -1.55 -18.85 16 18 C 0.04 1.53 5.53 72.35 0.40 1.93 16 19 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 20 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 21 H 0.06 1.46 6.57 -2.39 -0.02 1.44 16 22 H 0.05 1.80 6.98 -2.39 -0.02 1.78 16 23 H 0.05 1.76 6.41 -2.39 -0.02 1.74 16 24 H 0.04 1.52 6.59 -2.38 -0.02 1.50 16 25 H 0.06 1.82 6.56 -2.39 -0.02 1.81 16 26 H 0.04 1.56 7.31 -2.39 -0.02 1.55 16 27 H 0.27 14.59 8.31 -92.70 -0.77 13.82 16 28 H 0.07 2.66 7.75 -2.39 -0.02 2.64 16 29 H 0.06 2.66 7.86 -2.38 -0.02 2.64 16 30 H 0.11 3.56 8.14 -2.38 -0.02 3.54 16 31 H 0.04 1.72 4.89 -2.39 -0.01 1.70 16 32 H 0.03 1.23 2.93 -2.39 -0.01 1.22 16 33 H 0.09 3.42 6.38 -2.39 -0.02 3.40 16 Total: -1.00 -58.18 236.15 4.12 -54.07 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: 0.75 Total: 7.38 kcal Atomic # 6 Polarization: -39.69 SS G_CDS: 3.06 Total: -36.63 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: 0.30 Total: -49.19 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -1.55 Total: -18.85 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 1.56 Total: 43.22 kcal Total: -58.18 4.12 -54.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261126081.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.024 kcal (2) G-P(sol) polarization free energy of solvation -58.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds