Wall clock time and date at job start Mon Mar 30 2020 02:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47174 * 2 1 4 4 O 1.42905 * 109.46802 * 120.00062 * 2 1 3 5 5 C 1.42899 * 113.99778 * 150.00013 * 4 2 1 6 6 H 1.08993 * 110.67385 * 26.76544 * 5 4 2 7 7 C 1.54886 * 110.75587 * 263.32627 * 5 4 2 8 8 C 1.54269 * 104.19837 * 203.74550 * 7 5 4 9 9 C 1.53874 * 106.59703 * 23.60724 * 8 7 5 10 10 H 1.08997 * 110.07157 * 240.69476 * 9 8 7 11 11 C 1.50702 * 110.03331 * 119.28458 * 9 8 7 12 12 H 1.07993 * 120.00211 * 242.83884 * 11 9 8 13 13 C 1.37885 * 119.99638 * 62.83267 * 11 9 8 14 14 N 1.31512 * 119.99850 * 0.02562 * 13 11 9 15 15 Si 1.86794 * 119.99918 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47514 * 90.00063 * 15 13 11 17 17 H 1.48499 * 109.47446 * 210.00411 * 15 13 11 18 18 H 1.48509 * 109.47161 * 329.99889 * 15 13 11 19 19 C 1.54266 * 106.59846 * 0.02562 * 9 8 7 20 20 H 1.09001 * 109.47101 * 300.00440 * 1 2 3 21 21 H 1.09002 * 109.46859 * 60.00069 * 1 2 3 22 22 H 1.09001 * 109.47197 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47101 * 239.99560 * 2 1 3 24 24 H 1.09002 * 109.47171 * 299.99740 * 3 2 1 25 25 H 1.09004 * 109.47223 * 60.00243 * 3 2 1 26 26 H 1.08997 * 109.46785 * 179.97438 * 3 2 1 27 27 H 1.09009 * 110.48805 * 322.42286 * 7 5 4 28 28 H 1.09001 * 110.48791 * 85.06424 * 7 5 4 29 29 H 1.08997 * 110.02762 * 264.32599 * 8 7 5 30 30 H 1.09001 * 110.07337 * 142.91174 * 8 7 5 31 31 H 0.97002 * 120.00122 * 180.02562 * 14 13 11 32 32 H 1.08997 * 110.48385 * 217.70945 * 19 9 8 33 33 H 1.09000 * 110.48792 * 95.06775 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.2660 -1.3245 0.9887 6 1 3.8468 -0.8319 0.2090 7 6 3.0670 -2.8260 0.6647 8 6 4.3920 -3.4857 1.0996 9 6 5.0212 -2.5561 2.1520 10 1 5.9933 -2.2041 1.8068 11 6 5.1722 -3.2864 3.4616 12 1 4.6380 -2.9441 4.3355 13 6 5.9924 -4.3917 3.5439 14 7 6.6432 -4.8083 2.4797 15 14 6.1791 -5.2974 5.1669 16 1 5.1494 -6.3633 5.2604 17 1 7.5310 -5.9073 5.2408 18 1 6.0054 -4.3414 6.2901 19 6 4.0563 -1.3643 2.3204 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 1.6768 1.9563 -0.8900 25 1 1.6768 1.9563 0.8900 26 1 3.1300 1.4424 0.0005 27 1 2.2328 -3.2325 1.2367 28 1 2.9031 -2.9673 -0.4036 29 1 5.0584 -3.5849 0.2428 30 1 4.1966 -4.4654 1.5358 31 1 7.2199 -5.5861 2.5375 32 1 4.6144 -0.4385 2.4601 33 1 3.3822 -1.5348 3.1598 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261129482.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:46 Heat of formation + Delta-G solvation = -75.950527 kcal Electronic energy + Delta-G solvation = -12988.252435 eV Core-core repulsion = 10819.890915 eV Total energy + Delta-G solvation = -2168.361520 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.47622 -35.99949 -32.66287 -31.60305 -28.06585 -27.23022 -26.66874 -23.73030 -21.12476 -19.85512 -18.87496 -16.76199 -15.86440 -15.00708 -14.58347 -14.33709 -13.88612 -13.21800 -12.53113 -12.45397 -12.18861 -12.15887 -11.74426 -11.37784 -11.04413 -10.91119 -10.66009 -10.51424 -10.41385 -10.21544 -9.81847 -9.59835 -9.21390 -8.79331 -8.64991 -8.31604 -5.96405 -3.98929 3.34075 3.40509 3.44265 4.12213 4.49074 5.04475 5.17150 5.34559 5.35914 5.60155 5.64077 5.68229 5.78138 5.87681 5.91158 5.95542 6.22103 6.31852 6.33993 6.60788 6.68068 6.79250 6.85666 7.05396 7.24513 7.39935 7.76258 7.83041 7.98371 8.04776 8.52505 9.04431 9.64540 11.13123 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.070525 B = 0.007589 C = 0.007468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.929789 B = 3688.888932 C = 3748.307873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.078 3.922 3 C -0.174 4.174 4 O -0.377 6.377 5 C 0.080 3.920 6 H 0.056 0.944 7 C -0.143 4.143 8 C -0.091 4.091 9 C 0.045 3.955 10 H 0.028 0.972 11 C -0.510 4.510 12 H 0.056 0.944 13 C 0.059 3.941 14 N -0.891 5.891 15 Si 0.889 3.111 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.108 4.108 20 H 0.060 0.940 21 H 0.062 0.938 22 H 0.060 0.940 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.042 0.958 29 H 0.037 0.963 30 H 0.065 0.935 31 H 0.259 0.741 32 H 0.046 0.954 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.185 7.628 -5.553 12.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.020 3.980 3 C -0.231 4.231 4 O -0.296 6.296 5 C 0.022 3.978 6 H 0.075 0.925 7 C -0.181 4.181 8 C -0.129 4.129 9 C 0.027 3.973 10 H 0.046 0.954 11 C -0.548 4.548 12 H 0.074 0.926 13 C -0.142 4.142 14 N -0.530 5.530 15 Si 0.717 3.283 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.146 4.146 20 H 0.080 0.920 21 H 0.081 0.919 22 H 0.079 0.921 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.146 7.482 -5.433 12.323 hybrid contribution 0.335 -0.599 0.530 0.867 sum -7.811 6.883 -4.902 11.507 Atomic orbital electron populations 1.21845 0.94325 1.02453 1.01866 1.22011 0.94543 0.92272 0.89166 1.22312 1.01691 0.97212 1.01897 1.87958 1.37698 1.69584 1.34372 1.23385 0.83330 0.92045 0.98993 0.92548 1.22876 1.00717 0.95621 0.98863 1.22002 0.92390 1.00370 0.98136 1.19215 0.93081 0.90166 0.94852 0.95387 1.21265 1.26549 1.11662 0.95342 0.92595 1.24991 0.95615 0.97332 0.96258 1.69984 1.29485 1.25212 1.28309 0.86637 0.77250 0.80012 0.84366 1.20739 1.21325 1.19923 1.22570 0.97617 0.99397 0.94991 0.92047 0.91893 0.92123 0.92683 0.92288 0.92011 0.92468 0.91804 0.93874 0.94369 0.91636 0.93138 0.93508 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.56 37.16 0.36 -1.38 16 2 C 0.08 1.10 3.18 -26.73 -0.08 1.02 16 3 C -0.17 -2.14 9.53 37.16 0.35 -1.78 16 4 O -0.38 -6.83 9.77 -35.23 -0.34 -7.18 16 5 C 0.08 1.54 3.19 -24.73 -0.08 1.46 16 6 H 0.06 1.02 7.78 -51.93 -0.40 0.62 16 7 C -0.14 -2.89 6.55 -25.07 -0.16 -3.05 16 8 C -0.09 -2.18 5.61 -25.61 -0.14 -2.32 16 9 C 0.05 1.16 2.82 -90.65 -0.26 0.90 16 10 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 11 C -0.51 -14.30 8.32 -34.44 -0.29 -14.59 16 12 H 0.06 1.56 7.54 -52.49 -0.40 1.16 16 13 C 0.06 1.67 5.09 -17.82 -0.09 1.58 16 14 N -0.89 -25.99 12.44 55.43 0.69 -25.30 16 15 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 C -0.11 -2.38 6.07 -25.06 -0.15 -2.53 16 20 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 21 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.75 7.78 -51.93 -0.40 0.35 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.74 8.12 -51.93 -0.42 0.31 16 27 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 1.73 7.26 -51.93 -0.38 1.35 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 1.52 7.67 -51.93 -0.40 1.12 16 LS Contribution 268.88 15.07 4.05 4.05 Total: -1.00 -28.99 268.88 -6.93 -35.93 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -5.76 Total: -3.42 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: -0.55 Total: -20.69 kcal Atomic # 7 Polarization: -25.99 SS G_CDS: 0.69 Total: -25.30 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: -0.34 Total: -7.18 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.99 -6.93 -35.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261129482.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.024 kcal (2) G-P(sol) polarization free energy of solvation -28.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds