Wall clock time and date at job start Mon Mar 30 2020 02:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47174 * 2 1 4 4 O 1.42905 * 109.46802 * 120.00062 * 2 1 3 5 5 C 1.42899 * 113.99778 * 150.00013 * 4 2 1 6 6 H 1.08993 * 110.67385 * 26.76544 * 5 4 2 7 7 C 1.54886 * 110.75587 * 263.32627 * 5 4 2 8 8 C 1.54269 * 104.19837 * 203.74550 * 7 5 4 9 9 C 1.53874 * 106.59703 * 23.60724 * 8 7 5 10 10 H 1.08997 * 110.07157 * 240.69476 * 9 8 7 11 11 C 1.50702 * 110.03331 * 119.28458 * 9 8 7 12 12 H 1.07993 * 120.00211 * 242.83884 * 11 9 8 13 13 C 1.37885 * 119.99638 * 62.83267 * 11 9 8 14 14 N 1.31512 * 119.99850 * 0.02562 * 13 11 9 15 15 Si 1.86794 * 119.99918 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47514 * 90.00063 * 15 13 11 17 17 H 1.48499 * 109.47446 * 210.00411 * 15 13 11 18 18 H 1.48509 * 109.47161 * 329.99889 * 15 13 11 19 19 C 1.54266 * 106.59846 * 0.02562 * 9 8 7 20 20 H 1.09001 * 109.47101 * 300.00440 * 1 2 3 21 21 H 1.09002 * 109.46859 * 60.00069 * 1 2 3 22 22 H 1.09001 * 109.47197 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47101 * 239.99560 * 2 1 3 24 24 H 1.09002 * 109.47171 * 299.99740 * 3 2 1 25 25 H 1.09004 * 109.47223 * 60.00243 * 3 2 1 26 26 H 1.08997 * 109.46785 * 179.97438 * 3 2 1 27 27 H 1.09009 * 110.48805 * 322.42286 * 7 5 4 28 28 H 1.09001 * 110.48791 * 85.06424 * 7 5 4 29 29 H 1.08997 * 110.02762 * 264.32599 * 8 7 5 30 30 H 1.09001 * 110.07337 * 142.91174 * 8 7 5 31 31 H 0.97002 * 120.00122 * 180.02562 * 14 13 11 32 32 H 1.08997 * 110.48385 * 217.70945 * 19 9 8 33 33 H 1.09000 * 110.48792 * 95.06775 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.2660 -1.3245 0.9887 6 1 3.8468 -0.8319 0.2090 7 6 3.0670 -2.8260 0.6647 8 6 4.3920 -3.4857 1.0996 9 6 5.0212 -2.5561 2.1520 10 1 5.9933 -2.2041 1.8068 11 6 5.1722 -3.2864 3.4616 12 1 4.6380 -2.9441 4.3355 13 6 5.9924 -4.3917 3.5439 14 7 6.6432 -4.8083 2.4797 15 14 6.1791 -5.2974 5.1669 16 1 5.1494 -6.3633 5.2604 17 1 7.5310 -5.9073 5.2408 18 1 6.0054 -4.3414 6.2901 19 6 4.0563 -1.3643 2.3204 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 1.6768 1.9563 -0.8900 25 1 1.6768 1.9563 0.8900 26 1 3.1300 1.4424 0.0005 27 1 2.2328 -3.2325 1.2367 28 1 2.9031 -2.9673 -0.4036 29 1 5.0584 -3.5849 0.2428 30 1 4.1966 -4.4654 1.5358 31 1 7.2199 -5.5861 2.5375 32 1 4.6144 -0.4385 2.4601 33 1 3.3822 -1.5348 3.1598 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261129482.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:46 Heat of formation + Delta-G solvation = -92.394707 kcal Electronic energy + Delta-G solvation = -12988.965508 eV Core-core repulsion = 10819.890915 eV Total energy + Delta-G solvation = -2169.074593 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.95790 -37.62660 -34.49389 -33.05252 -29.94832 -28.66272 -27.97337 -25.75463 -22.25032 -21.47134 -20.81842 -18.49630 -17.59290 -16.63322 -16.43237 -15.65432 -15.41087 -14.60959 -14.15387 -14.10407 -13.69486 -13.19424 -13.00373 -12.96730 -12.69114 -12.66100 -12.31572 -12.24764 -11.92625 -11.74890 -11.59220 -11.37320 -11.05929 -10.74253 -10.47991 -10.24197 -8.12861 -6.22504 1.40975 1.41255 1.51981 2.43061 2.84084 3.17775 3.90961 3.98853 4.12118 4.21723 4.23993 4.35734 4.51777 4.78056 4.79889 4.87579 4.94249 4.95337 4.99435 5.01545 5.14209 5.18824 5.32385 5.37974 5.42834 5.47715 5.65669 5.90915 5.92774 6.39609 6.52761 6.88394 7.44531 8.96302 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.070525 B = 0.007589 C = 0.007468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.929789 B = 3688.888932 C = 3748.307873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.065 3.935 3 C -0.171 4.171 4 O -0.393 6.393 5 C 0.095 3.905 6 H 0.073 0.927 7 C -0.133 4.133 8 C -0.083 4.083 9 C 0.037 3.963 10 H 0.000 1.000 11 C -0.532 4.532 12 H 0.051 0.949 13 C 0.010 3.990 14 N -0.920 5.920 15 Si 0.954 3.046 16 H -0.275 1.275 17 H -0.282 1.282 18 H -0.268 1.268 19 C -0.103 4.103 20 H 0.058 0.942 21 H 0.091 0.909 22 H 0.054 0.946 23 H 0.062 0.938 24 H 0.086 0.914 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.030 0.970 30 H 0.033 0.967 31 H 0.261 0.739 32 H 0.056 0.944 33 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.305 8.392 -6.007 13.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.008 3.992 3 C -0.228 4.228 4 O -0.313 6.313 5 C 0.037 3.963 6 H 0.091 0.909 7 C -0.171 4.171 8 C -0.121 4.121 9 C 0.019 3.981 10 H 0.019 0.981 11 C -0.570 4.570 12 H 0.069 0.931 13 C -0.188 4.188 14 N -0.559 5.559 15 Si 0.779 3.221 16 H -0.201 1.201 17 H -0.207 1.207 18 H -0.193 1.193 19 C -0.141 4.141 20 H 0.077 0.923 21 H 0.110 0.890 22 H 0.073 0.927 23 H 0.080 0.920 24 H 0.105 0.895 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.281 8.259 -5.890 13.750 hybrid contribution 0.671 -0.796 0.640 1.222 sum -8.610 7.463 -5.250 12.546 Atomic orbital electron populations 1.21854 0.92524 1.02549 1.03202 1.22391 0.96013 0.92907 0.87919 1.22290 1.01139 0.96220 1.03148 1.87933 1.36720 1.69875 1.36728 1.23068 0.84082 0.91717 0.97420 0.90938 1.22767 0.97994 0.95910 1.00403 1.21790 0.94364 0.98781 0.97174 1.19209 0.92848 0.91744 0.94346 0.98132 1.21606 1.26778 1.12329 0.96265 0.93085 1.25767 0.95273 0.98112 0.99668 1.70095 1.29964 1.25633 1.30209 0.85619 0.77386 0.78781 0.80284 1.20117 1.20732 1.19295 1.22409 0.97124 0.98189 0.96378 0.92281 0.89002 0.92678 0.91963 0.89533 0.92310 0.93326 0.92292 0.91094 0.95089 0.94793 0.93030 0.92557 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.56 71.98 0.69 -2.28 16 2 C 0.06 1.65 3.18 30.60 0.10 1.75 16 3 C -0.17 -3.71 9.53 71.98 0.69 -3.02 16 4 O -0.39 -13.50 9.77 -148.98 -1.46 -14.96 16 5 C 0.09 3.53 3.19 31.89 0.10 3.63 16 6 H 0.07 2.48 7.78 -2.39 -0.02 2.46 16 7 C -0.13 -5.22 6.55 31.67 0.21 -5.01 16 8 C -0.08 -4.03 5.61 31.32 0.18 -3.85 16 9 C 0.04 1.93 2.82 -10.81 -0.03 1.90 16 10 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 11 C -0.53 -30.41 8.32 25.60 0.21 -30.20 16 12 H 0.05 2.89 7.54 -2.91 -0.02 2.87 16 13 C 0.01 0.59 5.09 84.66 0.43 1.02 16 14 N -0.92 -54.58 12.44 21.45 0.27 -54.31 16 15 Si 0.95 44.69 29.54 68.60 2.03 46.71 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 17 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 19 C -0.10 -4.53 6.07 31.68 0.19 -4.34 16 20 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 21 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.06 1.50 7.78 -2.39 -0.02 1.48 16 24 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.06 1.30 8.14 -2.38 -0.02 1.29 16 26 H 0.05 1.13 8.12 -2.39 -0.02 1.11 16 27 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 28 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.03 1.82 7.26 -2.39 -0.02 1.81 16 31 H 0.26 14.68 8.31 -92.71 -0.77 13.90 16 32 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.05 2.45 7.67 -2.39 -0.02 2.43 16 Total: -1.00 -62.20 268.88 4.64 -57.56 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: 1.04 Total: 5.40 kcal Atomic # 6 Polarization: -43.17 SS G_CDS: 2.76 Total: -40.40 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: 0.27 Total: -54.31 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -1.46 Total: -14.96 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -62.20 4.64 -57.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261129482.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.838 kcal (2) G-P(sol) polarization free energy of solvation -62.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds