Wall clock time and date at job start Mon Mar 30 2020 02:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46902 * 2 1 4 4 O 1.42897 * 109.47332 * 119.99734 * 2 1 3 5 5 C 1.42899 * 113.99563 * 149.99658 * 4 2 1 6 6 H 1.09001 * 110.01936 * 29.94714 * 5 4 2 7 7 C 1.54264 * 110.03705 * 268.54538 * 5 4 2 8 8 C 1.54889 * 104.20050 * 217.10781 * 7 5 4 9 9 C 1.54894 * 102.74455 * 37.94374 * 8 7 5 10 10 H 1.09005 * 110.48452 * 80.87200 * 9 8 7 11 11 C 1.50707 * 110.48373 * 203.37985 * 9 8 7 12 12 H 1.07992 * 119.99783 * 115.78754 * 11 9 8 13 13 C 1.37875 * 119.99873 * 295.78209 * 11 9 8 14 14 N 1.31515 * 120.00097 * 353.18857 * 13 11 9 15 15 Si 1.86797 * 119.99975 * 173.17896 * 13 11 9 16 16 H 1.48500 * 109.47503 * 265.12671 * 15 13 11 17 17 H 1.48508 * 109.46891 * 25.12738 * 15 13 11 18 18 H 1.48500 * 109.47169 * 145.12443 * 15 13 11 19 19 C 1.53883 * 110.02881 * 151.38148 * 5 4 2 20 20 H 1.09001 * 109.46775 * 299.99799 * 1 2 3 21 21 H 1.08996 * 109.47671 * 59.99743 * 1 2 3 22 22 H 1.09007 * 109.46927 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46775 * 240.00201 * 2 1 3 24 24 H 1.09003 * 109.47291 * 59.99702 * 3 2 1 25 25 H 1.08991 * 109.47287 * 180.02562 * 3 2 1 26 26 H 1.09007 * 109.46751 * 300.00268 * 3 2 1 27 27 H 1.09005 * 110.48438 * 98.42963 * 7 5 4 28 28 H 1.08997 * 110.48568 * 335.78813 * 7 5 4 29 29 H 1.09002 * 110.75702 * 279.63115 * 8 7 5 30 30 H 1.08998 * 110.91562 * 156.32910 * 8 7 5 31 31 H 0.97001 * 120.00127 * 179.97438 * 14 13 11 32 32 H 1.09000 * 110.02990 * 0.02562 * 19 5 4 33 33 H 1.08997 * 110.02949 * 238.57326 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2661 -1.3244 0.9885 6 1 3.8604 -0.7904 0.2470 7 6 3.0479 -2.7840 0.5393 8 6 4.1655 -3.5754 1.2632 9 6 4.2371 -2.8791 2.6449 10 1 3.4484 -3.2493 3.3000 11 6 5.5890 -3.0953 3.2750 12 1 6.2410 -2.2537 3.4562 13 6 5.9932 -4.3675 3.6201 14 7 5.1514 -5.3735 3.5248 15 14 7.7365 -4.6623 4.2228 16 1 8.5906 -5.0802 3.0822 17 1 8.2750 -3.4098 4.8117 18 1 7.7297 -5.7311 5.2538 19 6 4.0222 -1.3849 2.3273 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.6766 1.9564 0.8900 25 1 3.1299 1.4426 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 3.1578 -2.8710 -0.5417 28 1 2.0657 -3.1371 0.8535 29 1 5.1127 -3.4791 0.7325 30 1 3.8908 -4.6244 1.3730 31 1 5.4359 -6.2686 3.7672 32 1 3.4281 -0.9182 3.1130 33 1 4.9841 -0.8804 2.2359 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261129491.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:49 Heat of formation + Delta-G solvation = -92.856472 kcal Electronic energy + Delta-G solvation = -12987.820848 eV Core-core repulsion = 10818.726231 eV Total energy + Delta-G solvation = -2169.094617 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.00915 -37.52143 -34.49454 -33.03066 -29.98985 -28.67540 -27.96879 -25.76213 -22.26305 -21.28460 -20.91640 -18.58661 -17.77275 -16.61973 -16.12475 -15.79365 -15.18728 -14.57898 -14.17654 -14.14964 -13.70118 -13.23182 -13.09467 -12.99750 -12.71911 -12.62544 -12.39932 -12.16141 -11.92995 -11.70688 -11.46366 -11.33839 -11.02006 -10.84057 -10.45973 -10.28385 -8.12412 -6.21470 1.41784 1.42200 1.53220 2.44085 2.86183 3.18255 3.91491 3.96247 4.12945 4.22933 4.28456 4.36145 4.54693 4.75716 4.79311 4.87008 4.94441 4.95433 5.00431 5.02056 5.19299 5.21804 5.33959 5.35860 5.38957 5.46053 5.64462 5.88548 5.97338 6.36657 6.55134 6.89463 7.45509 8.97495 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.076052 B = 0.007607 C = 0.007254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.082240 B = 3679.732028 C = 3859.226960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.065 3.935 3 C -0.170 4.170 4 O -0.397 6.397 5 C 0.097 3.903 6 H 0.072 0.928 7 C -0.137 4.137 8 C -0.094 4.094 9 C 0.039 3.961 10 H -0.006 1.006 11 C -0.534 4.534 12 H 0.055 0.945 13 C 0.011 3.989 14 N -0.922 5.922 15 Si 0.955 3.045 16 H -0.274 1.274 17 H -0.267 1.267 18 H -0.285 1.285 19 C -0.108 4.108 20 H 0.057 0.943 21 H 0.092 0.908 22 H 0.052 0.948 23 H 0.064 0.936 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.037 0.963 31 H 0.261 0.739 32 H 0.050 0.950 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.394 9.770 -8.762 14.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.008 3.992 3 C -0.227 4.227 4 O -0.318 6.318 5 C 0.040 3.960 6 H 0.090 0.910 7 C -0.175 4.175 8 C -0.133 4.133 9 C 0.020 3.980 10 H 0.012 0.988 11 C -0.572 4.572 12 H 0.074 0.926 13 C -0.188 4.188 14 N -0.561 5.561 15 Si 0.781 3.219 16 H -0.199 1.199 17 H -0.191 1.191 18 H -0.211 1.211 19 C -0.145 4.145 20 H 0.076 0.924 21 H 0.111 0.889 22 H 0.072 0.928 23 H 0.082 0.918 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.105 0.895 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.513 9.597 -8.557 13.990 hybrid contribution 0.969 -0.628 0.420 1.229 sum -4.544 8.969 -8.137 12.935 Atomic orbital electron populations 1.21863 0.92770 1.02441 1.03153 1.22369 0.95883 0.92948 0.88026 1.22280 1.01215 0.96140 1.03078 1.87988 1.37055 1.69943 1.36778 1.22741 0.84218 0.91942 0.97115 0.91035 1.22865 0.99067 0.95753 0.99820 1.22194 0.96082 0.98125 0.96871 1.19408 0.94792 0.90734 0.93016 0.98791 1.21583 1.02100 0.93041 1.40439 0.92649 1.25805 1.01128 0.96146 0.95684 1.70115 1.36066 1.00278 1.49665 0.85585 0.80333 0.77931 0.78081 1.19913 1.19099 1.21055 1.22239 0.98260 0.98259 0.95791 0.92417 0.88946 0.92848 0.91828 0.92462 0.93139 0.89539 0.90645 0.92375 0.93731 0.94387 0.93058 0.93128 0.91757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 9.56 71.98 0.69 -2.40 16 2 C 0.06 1.66 3.17 30.60 0.10 1.76 16 3 C -0.17 -3.66 9.53 71.98 0.69 -2.98 16 4 O -0.40 -13.91 9.54 -148.98 -1.42 -15.33 16 5 C 0.10 3.59 3.16 31.32 0.10 3.69 16 6 H 0.07 2.33 7.69 -2.39 -0.02 2.31 16 7 C -0.14 -5.30 6.55 31.67 0.21 -5.09 16 8 C -0.09 -4.55 5.80 31.89 0.18 -4.36 16 9 C 0.04 2.06 2.69 -10.46 -0.03 2.03 16 10 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 11 C -0.53 -30.34 8.46 25.60 0.22 -30.12 16 12 H 0.06 3.07 7.56 -2.91 -0.02 3.04 16 13 C 0.01 0.62 5.29 84.65 0.45 1.07 16 14 N -0.92 -55.29 12.52 21.45 0.27 -55.02 16 15 Si 0.96 44.34 29.54 68.60 2.03 46.37 16 16 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 18 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 19 C -0.11 -4.73 6.17 31.32 0.19 -4.54 16 20 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 21 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 22 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 23 H 0.06 1.52 7.81 -2.39 -0.02 1.50 16 24 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.05 1.14 8.00 -2.39 -0.02 1.12 16 26 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 27 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 28 H 0.06 2.31 8.08 -2.39 -0.02 2.29 16 29 H 0.04 2.13 8.05 -2.39 -0.02 2.11 16 30 H 0.04 2.00 7.69 -2.39 -0.02 1.98 16 31 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 32 H 0.05 2.23 7.95 -2.39 -0.02 2.21 16 33 H 0.06 2.73 7.66 -2.39 -0.02 2.71 16 Total: -1.00 -62.96 269.11 4.71 -58.26 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: 1.04 Total: 6.67 kcal Atomic # 6 Polarization: -43.74 SS G_CDS: 2.79 Total: -40.95 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: 0.27 Total: -55.02 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -1.42 Total: -15.33 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -62.96 4.71 -58.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261129491.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.601 kcal (2) G-P(sol) polarization free energy of solvation -62.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds