Wall clock time and date at job start Mon Mar 30 2020 02:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47328 * 2 1 4 4 O 1.42895 * 109.47231 * 120.00380 * 2 1 3 5 5 C 1.42904 * 114.00410 * 150.00217 * 4 2 1 6 6 H 1.09004 * 110.42985 * 328.90938 * 5 4 2 7 7 C 1.54887 * 110.48747 * 91.44806 * 5 4 2 8 8 C 1.54890 * 102.91108 * 156.53074 * 7 5 4 9 9 C 1.54463 * 104.10368 * 322.30112 * 8 7 5 10 10 H 1.08999 * 109.85715 * 264.10233 * 9 8 7 11 11 C 1.50699 * 110.16255 * 142.74834 * 9 8 7 12 12 H 1.08003 * 120.00277 * 242.65171 * 11 9 8 13 13 C 1.37879 * 119.99890 * 62.65192 * 11 9 8 14 14 N 1.31520 * 119.99948 * 359.97438 * 13 11 9 15 15 Si 1.86795 * 119.99930 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47028 * 90.00038 * 15 13 11 17 17 H 1.48499 * 109.47400 * 209.99773 * 15 13 11 18 18 H 1.48496 * 109.47337 * 329.99861 * 15 13 11 19 19 C 1.53877 * 106.68421 * 23.34437 * 9 8 7 20 20 H 1.09005 * 109.47486 * 299.99856 * 1 2 3 21 21 H 1.08999 * 109.47313 * 59.99653 * 1 2 3 22 22 H 1.09002 * 109.47147 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46970 * 240.00238 * 2 1 3 24 24 H 1.09005 * 109.46719 * 59.99674 * 3 2 1 25 25 H 1.08999 * 109.47388 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.47207 * 300.00412 * 3 2 1 27 27 H 1.09002 * 110.75856 * 274.93984 * 7 5 4 28 28 H 1.09006 * 110.75640 * 38.12970 * 7 5 4 29 29 H 1.09003 * 110.48855 * 80.83451 * 8 7 5 30 30 H 1.09003 * 110.48748 * 203.47148 * 8 7 5 31 31 H 0.97003 * 119.99575 * 180.02562 * 14 13 11 32 32 H 1.08995 * 110.02951 * 240.87549 * 19 9 8 33 33 H 1.08998 * 110.07557 * 119.46051 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.2660 -1.3245 0.9886 6 1 3.3769 -1.6633 -0.0415 7 6 4.4265 -0.3742 1.3746 8 6 5.5776 -1.3536 1.7138 9 6 4.8736 -2.5294 2.4265 10 1 4.9291 -2.3943 3.5066 11 6 5.5182 -3.8344 2.0360 12 1 4.9450 -4.5840 1.5107 13 6 6.8398 -4.0714 2.3494 14 7 7.5380 -3.1584 2.9886 15 14 7.6386 -5.6893 1.8660 16 1 8.2405 -5.5599 0.5146 17 1 8.6979 -6.0315 2.8488 18 1 6.6126 -6.7627 1.8502 19 6 3.4050 -2.5087 1.9674 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.6766 1.9563 0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6766 1.9564 -0.8899 27 1 4.6981 0.2650 0.5345 28 1 4.1611 0.2261 2.2449 29 1 6.0657 -1.6990 0.8025 30 1 6.2997 -0.8783 2.3778 31 1 8.4679 -3.3250 3.2087 32 1 2.7479 -2.3636 2.8247 33 1 3.1580 -3.4421 1.4616 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261129496.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:50 Heat of formation + Delta-G solvation = -75.597569 kcal Electronic energy + Delta-G solvation = -13026.310237 eV Core-core repulsion = 10857.964022 eV Total energy + Delta-G solvation = -2168.346214 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.51526 -35.92346 -32.62801 -31.63648 -28.21857 -27.02966 -26.68823 -23.73380 -21.09734 -19.87694 -18.89980 -16.61935 -16.20448 -15.05658 -14.48063 -14.24050 -13.54730 -13.43855 -12.54777 -12.33053 -12.19114 -12.02728 -11.85195 -11.54130 -11.09696 -10.88019 -10.66129 -10.52476 -10.37604 -10.06370 -9.77614 -9.52999 -9.30163 -8.81373 -8.68751 -8.32694 -5.97212 -3.99848 3.32318 3.39148 3.42474 4.13587 4.47070 5.07458 5.20552 5.33857 5.37691 5.62729 5.65364 5.69958 5.81264 5.89536 5.94953 5.96211 6.24362 6.29953 6.42285 6.60258 6.67864 6.75868 6.87491 7.07285 7.25563 7.39110 7.75751 7.86980 7.92997 8.06117 8.50302 9.03446 9.63681 11.12358 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.069672 B = 0.007817 C = 0.007420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.786237 B = 3581.222519 C = 3772.765536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.079 3.921 3 C -0.175 4.175 4 O -0.379 6.379 5 C 0.085 3.915 6 H 0.056 0.944 7 C -0.149 4.149 8 C -0.091 4.091 9 C 0.046 3.954 10 H 0.030 0.970 11 C -0.513 4.513 12 H 0.055 0.945 13 C 0.060 3.940 14 N -0.890 5.890 15 Si 0.889 3.111 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.275 1.275 19 C -0.109 4.109 20 H 0.060 0.940 21 H 0.062 0.938 22 H 0.059 0.941 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.046 0.954 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.259 0.741 32 H 0.052 0.948 33 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.939 6.248 -5.740 12.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.021 3.979 3 C -0.233 4.233 4 O -0.299 6.299 5 C 0.028 3.972 6 H 0.074 0.926 7 C -0.187 4.187 8 C -0.130 4.130 9 C 0.027 3.973 10 H 0.048 0.952 11 C -0.552 4.552 12 H 0.073 0.927 13 C -0.141 4.141 14 N -0.528 5.528 15 Si 0.717 3.283 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.147 4.147 20 H 0.079 0.921 21 H 0.081 0.919 22 H 0.078 0.922 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.858 6.267 -5.482 12.157 hybrid contribution 0.756 -0.787 -0.527 1.212 sum -8.102 5.480 -6.009 11.480 Atomic orbital electron populations 1.21857 0.94437 1.02366 1.01884 1.22038 0.94344 0.92596 0.88914 1.22381 1.02142 0.97069 1.01697 1.87938 1.37671 1.69616 1.34660 1.23247 0.81901 0.93159 0.98866 0.92558 1.23143 0.97447 0.98182 0.99879 1.22257 0.95183 0.95304 1.00231 1.19243 0.87981 0.94090 0.95979 0.95230 1.21309 0.95896 1.01005 1.36946 0.92651 1.24999 0.97462 0.96529 0.95103 1.69981 1.08839 1.33748 1.40272 0.86648 0.79163 0.84306 0.78203 1.20778 1.21284 1.19945 1.22364 1.00055 0.94944 0.97352 0.92067 0.91885 0.92194 0.92712 0.92137 0.91991 0.92484 0.93572 0.91985 0.92940 0.92343 0.93126 0.92938 0.92354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.56 37.15 0.36 -1.38 16 2 C 0.08 1.13 3.34 -26.73 -0.09 1.04 16 3 C -0.18 -2.23 9.37 37.16 0.35 -1.88 16 4 O -0.38 -6.86 9.71 -35.23 -0.34 -7.21 16 5 C 0.09 1.67 3.32 -25.07 -0.08 1.58 16 6 H 0.06 1.06 7.45 -51.93 -0.39 0.68 16 7 C -0.15 -2.95 5.77 -24.74 -0.14 -3.09 16 8 C -0.09 -2.18 5.46 -24.97 -0.14 -2.32 16 9 C 0.05 1.17 2.81 -90.55 -0.25 0.91 16 10 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 11 C -0.51 -14.28 8.37 -34.44 -0.29 -14.57 16 12 H 0.06 1.52 7.33 -52.48 -0.38 1.13 16 13 C 0.06 1.70 5.33 -17.82 -0.09 1.60 16 14 N -0.89 -25.89 12.43 55.43 0.69 -25.20 16 15 Si 0.89 21.47 29.54 -169.99 -5.02 16.44 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 C -0.11 -2.41 6.20 -25.61 -0.16 -2.57 16 20 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.05 0.76 7.41 -51.93 -0.38 0.37 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.84 6.31 -51.93 -0.33 0.51 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.82 7.07 -51.93 -0.37 0.46 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.05 1.31 7.85 -51.93 -0.41 0.90 16 30 H 0.06 1.47 7.98 -51.93 -0.41 1.06 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.05 1.13 8.07 -51.93 -0.42 0.71 16 33 H 0.06 1.28 7.37 -51.93 -0.38 0.89 16 LS Contribution 264.67 15.07 3.99 3.99 Total: -1.00 -28.79 264.67 -6.80 -35.59 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -5.57 Total: -2.93 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: -0.54 Total: -20.68 kcal Atomic # 7 Polarization: -25.89 SS G_CDS: 0.69 Total: -25.20 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.34 Total: -7.21 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -28.79 -6.80 -35.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261129496.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.009 kcal (2) G-P(sol) polarization free energy of solvation -28.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds