Wall clock time and date at job start Mon Mar 30 2020 02:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47328 * 2 1 4 4 O 1.42895 * 109.47231 * 120.00380 * 2 1 3 5 5 C 1.42904 * 114.00410 * 150.00217 * 4 2 1 6 6 H 1.09004 * 110.42985 * 328.90938 * 5 4 2 7 7 C 1.54887 * 110.48747 * 91.44806 * 5 4 2 8 8 C 1.54890 * 102.91108 * 156.53074 * 7 5 4 9 9 C 1.54463 * 104.10368 * 322.30112 * 8 7 5 10 10 H 1.08999 * 109.85715 * 264.10233 * 9 8 7 11 11 C 1.50699 * 110.16255 * 142.74834 * 9 8 7 12 12 H 1.08003 * 120.00277 * 242.65171 * 11 9 8 13 13 C 1.37879 * 119.99890 * 62.65192 * 11 9 8 14 14 N 1.31520 * 119.99948 * 359.97438 * 13 11 9 15 15 Si 1.86795 * 119.99930 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47028 * 90.00038 * 15 13 11 17 17 H 1.48499 * 109.47400 * 209.99773 * 15 13 11 18 18 H 1.48496 * 109.47337 * 329.99861 * 15 13 11 19 19 C 1.53877 * 106.68421 * 23.34437 * 9 8 7 20 20 H 1.09005 * 109.47486 * 299.99856 * 1 2 3 21 21 H 1.08999 * 109.47313 * 59.99653 * 1 2 3 22 22 H 1.09002 * 109.47147 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46970 * 240.00238 * 2 1 3 24 24 H 1.09005 * 109.46719 * 59.99674 * 3 2 1 25 25 H 1.08999 * 109.47388 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.47207 * 300.00412 * 3 2 1 27 27 H 1.09002 * 110.75856 * 274.93984 * 7 5 4 28 28 H 1.09006 * 110.75640 * 38.12970 * 7 5 4 29 29 H 1.09003 * 110.48855 * 80.83451 * 8 7 5 30 30 H 1.09003 * 110.48748 * 203.47148 * 8 7 5 31 31 H 0.97003 * 119.99575 * 180.02562 * 14 13 11 32 32 H 1.08995 * 110.02951 * 240.87549 * 19 9 8 33 33 H 1.08998 * 110.07557 * 119.46051 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.2660 -1.3245 0.9886 6 1 3.3769 -1.6633 -0.0415 7 6 4.4265 -0.3742 1.3746 8 6 5.5776 -1.3536 1.7138 9 6 4.8736 -2.5294 2.4265 10 1 4.9291 -2.3943 3.5066 11 6 5.5182 -3.8344 2.0360 12 1 4.9450 -4.5840 1.5107 13 6 6.8398 -4.0714 2.3494 14 7 7.5380 -3.1584 2.9886 15 14 7.6386 -5.6893 1.8660 16 1 8.2405 -5.5599 0.5146 17 1 8.6979 -6.0315 2.8488 18 1 6.6126 -6.7627 1.8502 19 6 3.4050 -2.5087 1.9674 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.6766 1.9563 0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6766 1.9564 -0.8899 27 1 4.6981 0.2650 0.5345 28 1 4.1611 0.2261 2.2449 29 1 6.0657 -1.6990 0.8025 30 1 6.2997 -0.8783 2.3778 31 1 8.4679 -3.3250 3.2087 32 1 2.7479 -2.3636 2.8247 33 1 3.1580 -3.4421 1.4616 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261129496.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:50 Heat of formation + Delta-G solvation = -91.945608 kcal Electronic energy + Delta-G solvation = -13027.019141 eV Core-core repulsion = 10857.964022 eV Total energy + Delta-G solvation = -2169.055119 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.00071 -37.55982 -34.45847 -33.07877 -30.05394 -28.53345 -27.99395 -25.73493 -22.19912 -21.53360 -20.82556 -18.57510 -17.72268 -16.59890 -16.33920 -15.51259 -15.22897 -14.85516 -14.22789 -13.94736 -13.58438 -13.22572 -13.08144 -12.96887 -12.85895 -12.61818 -12.41415 -12.20682 -11.78269 -11.54171 -11.46497 -11.41467 -11.18206 -10.77354 -10.46554 -10.28904 -8.11925 -6.22161 1.41557 1.42165 1.52744 2.43684 2.83317 3.18754 3.95980 3.97702 4.08874 4.23399 4.27831 4.37253 4.57678 4.75351 4.80099 4.87251 4.92610 4.96345 4.98428 5.06015 5.16115 5.20863 5.33319 5.38012 5.41016 5.48430 5.65794 5.89012 5.95313 6.36142 6.53232 6.89302 7.45150 8.97266 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.069672 B = 0.007817 C = 0.007420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.786237 B = 3581.222519 C = 3772.765536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.066 3.934 3 C -0.172 4.172 4 O -0.393 6.393 5 C 0.098 3.902 6 H 0.067 0.933 7 C -0.134 4.134 8 C -0.083 4.083 9 C 0.037 3.963 10 H -0.006 1.006 11 C -0.533 4.533 12 H 0.055 0.945 13 C 0.010 3.990 14 N -0.921 5.921 15 Si 0.955 3.045 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.268 1.268 19 C -0.105 4.105 20 H 0.058 0.942 21 H 0.091 0.909 22 H 0.055 0.945 23 H 0.061 0.939 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.037 0.963 30 H 0.034 0.966 31 H 0.260 0.740 32 H 0.052 0.948 33 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.896 6.482 -7.277 13.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.008 3.992 3 C -0.230 4.230 4 O -0.313 6.313 5 C 0.041 3.959 6 H 0.085 0.915 7 C -0.172 4.172 8 C -0.122 4.122 9 C 0.018 3.982 10 H 0.012 0.988 11 C -0.571 4.571 12 H 0.074 0.926 13 C -0.189 4.189 14 N -0.560 5.560 15 Si 0.781 3.219 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.192 1.192 19 C -0.143 4.143 20 H 0.078 0.922 21 H 0.109 0.891 22 H 0.074 0.926 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.102 0.898 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.835 6.508 -7.027 13.728 hybrid contribution 1.008 -0.827 -0.031 1.304 sum -8.827 5.681 -7.057 12.649 Atomic orbital electron populations 1.21860 0.92483 1.02582 1.03207 1.22412 0.95936 0.93102 0.87703 1.22353 1.01436 0.96225 1.02968 1.87914 1.36553 1.69938 1.36917 1.22938 0.82669 0.91982 0.98341 0.91527 1.23013 0.95772 0.97572 1.00855 1.22030 0.95896 0.95630 0.98632 1.19240 0.90640 0.94214 0.94063 0.98783 1.21661 0.96431 1.01943 1.37023 0.92637 1.25809 0.98061 0.99993 0.95034 1.70112 1.09095 1.35626 1.41176 0.85594 0.78165 0.80113 0.78042 1.19927 1.20991 1.19202 1.22208 0.97461 0.96458 0.98139 0.92245 0.89068 0.92575 0.92058 0.92382 0.93040 0.89758 0.90999 0.91980 0.94433 0.94726 0.93074 0.92931 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.56 71.98 0.69 -2.27 16 2 C 0.07 1.69 3.34 30.59 0.10 1.79 16 3 C -0.17 -3.87 9.37 71.98 0.67 -3.19 16 4 O -0.39 -13.49 9.71 -148.98 -1.45 -14.94 16 5 C 0.10 3.70 3.32 31.67 0.11 3.80 16 6 H 0.07 2.38 7.45 -2.38 -0.02 2.36 16 7 C -0.13 -5.19 5.77 31.88 0.18 -5.01 16 8 C -0.08 -4.05 5.46 31.74 0.17 -3.88 16 9 C 0.04 1.94 2.81 -10.75 -0.03 1.91 16 10 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 11 C -0.53 -30.04 8.37 25.60 0.21 -29.82 16 12 H 0.06 3.05 7.33 -2.91 -0.02 3.03 16 13 C 0.01 0.54 5.33 84.65 0.45 1.00 16 14 N -0.92 -54.66 12.43 21.45 0.27 -54.39 16 15 Si 0.96 44.14 29.54 68.60 2.03 46.16 16 16 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 17 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 19 C -0.10 -4.62 6.20 31.32 0.19 -4.42 16 20 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 21 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.06 1.51 7.41 -2.38 -0.02 1.49 16 24 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 25 H 0.05 1.25 6.31 -2.39 -0.02 1.24 16 26 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.07 2.42 7.07 -2.39 -0.02 2.40 16 28 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 29 H 0.04 1.89 7.85 -2.39 -0.02 1.87 16 30 H 0.03 1.79 7.98 -2.39 -0.02 1.77 16 31 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 32 H 0.05 2.26 8.07 -2.39 -0.02 2.24 16 33 H 0.06 2.50 7.37 -2.39 -0.02 2.48 16 Total: -1.00 -61.70 264.67 4.65 -57.05 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: 1.05 Total: 6.22 kcal Atomic # 6 Polarization: -42.86 SS G_CDS: 2.76 Total: -40.10 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: 0.27 Total: -54.39 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -1.45 Total: -14.94 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -61.70 4.65 -57.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261129496.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.896 kcal (2) G-P(sol) polarization free energy of solvation -61.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds