Wall clock time and date at job start Mon Mar 30 2020 01:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46927 * 2 1 4 4 C 1.52992 * 109.47173 * 119.99276 * 2 1 3 5 5 C 1.50697 * 109.54702 * 300.00889 * 4 2 1 6 6 H 1.08000 * 119.99606 * 274.80299 * 5 4 2 7 7 C 1.37879 * 120.00398 * 94.80752 * 5 4 2 8 8 N 1.31508 * 119.99487 * 328.73683 * 7 5 4 9 9 Si 1.86801 * 120.00235 * 148.73950 * 7 5 4 10 10 H 1.48496 * 109.46951 * 179.97438 * 9 7 5 11 11 H 1.48504 * 109.46685 * 299.99964 * 9 7 5 12 12 H 1.48503 * 109.46968 * 59.99463 * 9 7 5 13 13 C 1.53178 * 109.54097 * 60.18260 * 4 2 1 14 14 C 1.53285 * 109.06717 * 176.85133 * 13 4 2 15 15 O 1.42907 * 109.46044 * 302.44489 * 14 13 4 16 16 C 1.42906 * 114.09554 * 61.15610 * 15 14 13 17 17 C 1.53094 * 109.41333 * 298.84321 * 16 15 14 18 18 H 1.09003 * 109.46861 * 60.00621 * 1 2 3 19 19 H 1.09001 * 109.46697 * 179.97438 * 1 2 3 20 20 H 1.08992 * 109.47299 * 300.00275 * 1 2 3 21 21 H 1.08996 * 109.47488 * 240.00453 * 2 1 3 22 22 H 1.09005 * 109.47316 * 179.97438 * 3 2 1 23 23 H 1.09004 * 109.47092 * 299.99878 * 3 2 1 24 24 H 1.09001 * 109.47453 * 59.99550 * 3 2 1 25 25 H 0.97001 * 119.99708 * 180.02562 * 8 7 5 26 26 H 1.08996 * 109.52673 * 296.84098 * 13 4 2 27 27 H 1.09008 * 109.52303 * 57.03019 * 13 4 2 28 28 H 1.08999 * 109.46053 * 182.45008 * 14 13 4 29 29 H 1.08994 * 109.46514 * 62.44619 * 14 13 4 30 30 H 1.09002 * 109.47985 * 178.86188 * 16 15 14 31 31 H 1.08997 * 109.48990 * 58.82696 * 16 15 14 32 32 H 1.08995 * 109.52240 * 297.70200 * 17 16 15 33 33 H 1.09007 * 109.57322 * 177.55095 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.5385 -0.0120 2.4808 6 1 2.0828 0.8326 2.8769 7 6 0.3848 -0.4414 3.1019 8 7 -0.5799 -0.9858 2.3931 9 14 0.1921 -0.2497 4.9500 10 1 -1.1285 -0.7848 5.3681 11 1 1.2719 -0.9997 5.6406 12 1 0.2797 1.1883 5.3103 13 6 1.5341 -2.1669 1.2488 14 6 2.1150 -2.9011 2.4624 15 8 3.5421 -2.8414 2.4168 16 6 4.0723 -1.5151 2.4614 17 6 3.5718 -0.7259 1.2488 18 1 -0.3633 0.5138 -0.8901 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 1.8934 -0.5137 -0.8900 22 1 3.1300 1.4426 0.0005 23 1 1.6766 1.9564 -0.8900 24 1 1.6766 1.9564 0.8899 25 1 -1.3917 -1.2876 2.8300 26 1 0.4455 -2.1719 1.3041 27 1 1.8555 -2.6650 0.3340 28 1 1.7941 -3.9426 2.4446 29 1 1.7605 -2.4270 3.3776 30 1 5.1613 -1.5581 2.4428 31 1 3.7435 -1.0226 3.3765 32 1 3.9343 -1.1949 0.3341 33 1 3.9393 0.2989 1.3030 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261136570.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:53 Heat of formation + Delta-G solvation = -53.045408 kcal Electronic energy + Delta-G solvation = -14215.296748 eV Core-core repulsion = 12047.928469 eV Total energy + Delta-G solvation = -2167.368279 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.77212 -35.51813 -32.24361 -30.36137 -29.61211 -25.94432 -25.42232 -23.35140 -22.04358 -19.52360 -18.48984 -15.83759 -15.05420 -14.79076 -14.49176 -13.88824 -13.08701 -13.01589 -12.80092 -12.39869 -11.75472 -11.61389 -11.02278 -10.89665 -10.65454 -10.55517 -10.25416 -10.20386 -10.08591 -9.78160 -9.52961 -8.95657 -8.75448 -8.66099 -8.39637 -7.76322 -6.08373 -3.98639 3.27118 3.35210 3.41207 4.39841 4.94002 5.05531 5.96626 6.09040 6.24515 6.30516 6.35678 6.47247 6.50515 6.58461 6.64578 6.77101 6.82067 6.98750 7.02420 7.04078 7.21394 7.27319 7.41469 7.48439 7.66400 7.76854 7.80634 8.07747 8.23132 8.37848 8.52079 8.94833 9.54752 10.86536 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.026493 B = 0.021928 C = 0.015955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.612924 B = 1276.584696 C = 1754.481548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.074 4.074 3 C -0.132 4.132 4 C 0.073 3.927 5 C -0.514 4.514 6 H 0.056 0.944 7 C 0.080 3.920 8 N -0.849 5.849 9 Si 0.856 3.144 10 H -0.288 1.288 11 H -0.276 1.276 12 H -0.279 1.279 13 C -0.155 4.155 14 C 0.073 3.927 15 O -0.406 6.406 16 C 0.075 3.925 17 C -0.137 4.137 18 H -0.004 1.004 19 H 0.052 0.948 20 H 0.086 0.914 21 H 0.021 0.979 22 H 0.035 0.965 23 H 0.025 0.975 24 H 0.061 0.939 25 H 0.258 0.742 26 H 0.128 0.872 27 H 0.020 0.980 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.038 0.962 33 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.974 -0.019 -1.304 3.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 C -0.189 4.189 4 C 0.073 3.927 5 C -0.551 4.551 6 H 0.075 0.925 7 C -0.122 4.122 8 N -0.486 5.486 9 Si 0.683 3.317 10 H -0.214 1.214 11 H -0.202 1.202 12 H -0.204 1.204 13 C -0.192 4.192 14 C -0.003 4.003 15 O -0.325 6.325 16 C -0.002 4.002 17 C -0.175 4.175 18 H 0.015 0.985 19 H 0.071 0.929 20 H 0.105 0.895 21 H 0.040 0.960 22 H 0.054 0.946 23 H 0.044 0.956 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.145 0.855 27 H 0.038 0.962 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.885 -0.262 -1.305 3.177 hybrid contribution -0.244 0.330 1.021 1.100 sum 2.641 0.068 -0.284 2.657 Atomic orbital electron populations 1.21759 0.94449 1.01614 0.99065 1.21153 0.96816 0.94516 0.96838 1.21754 0.98961 0.98051 1.00122 1.18209 0.88768 0.92239 0.93491 1.20797 1.08677 1.15646 1.09944 0.92536 1.24739 0.94804 0.95606 0.97090 1.70195 1.04288 1.40319 1.33790 0.87226 0.77208 0.78587 0.88640 1.21410 1.20220 1.20420 1.22530 1.06571 0.95856 0.94289 1.22507 0.79539 0.98339 0.99901 1.87680 1.22149 1.27481 1.95238 1.22341 0.95695 0.83500 0.98659 1.22226 0.99966 0.98667 0.96634 0.98479 0.92892 0.89521 0.96015 0.94609 0.95634 0.91971 0.93093 0.85454 0.96152 0.92147 0.92698 0.91868 0.92814 0.94311 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.55 7.46 37.16 0.28 -2.27 16 2 C -0.07 -1.65 2.28 -90.62 -0.21 -1.85 16 3 C -0.13 -2.66 8.60 37.16 0.32 -2.34 16 4 C 0.07 1.69 0.28 -155.48 -0.04 1.65 16 5 C -0.51 -12.71 4.43 -34.44 -0.15 -12.87 16 6 H 0.06 1.45 7.93 -52.49 -0.42 1.03 16 7 C 0.08 2.00 3.11 -17.82 -0.06 1.94 16 8 N -0.85 -21.19 7.55 55.43 0.42 -20.77 16 9 Si 0.86 19.80 29.13 -169.99 -4.95 14.85 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 C -0.16 -3.62 4.03 -26.49 -0.11 -3.73 16 14 C 0.07 1.66 6.54 37.30 0.24 1.91 16 15 O -0.41 -9.18 10.77 -35.23 -0.38 -9.56 16 16 C 0.07 1.56 6.62 37.21 0.25 1.80 16 17 C -0.14 -2.91 4.47 -26.59 -0.12 -3.02 16 18 H 0.00 -0.08 8.14 -51.93 -0.42 -0.50 16 19 H 0.05 1.25 6.13 -51.93 -0.32 0.93 16 20 H 0.09 2.17 5.64 -51.93 -0.29 1.88 16 21 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.03 0.67 6.51 -51.93 -0.34 0.34 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 1.33 7.18 -51.93 -0.37 0.96 16 25 H 0.26 6.30 8.31 -40.82 -0.34 5.96 16 26 H 0.13 3.17 3.95 -51.93 -0.21 2.96 16 27 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.05 1.33 5.82 -51.93 -0.30 1.03 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.05 1.17 7.38 -51.93 -0.38 0.79 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 1.13 6.62 -51.93 -0.34 0.78 16 LS Contribution 239.04 15.07 3.60 3.60 Total: -1.00 -24.98 239.04 -5.97 -30.95 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -5.07 Total: -0.28 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: 0.40 Total: -18.79 kcal Atomic # 7 Polarization: -21.19 SS G_CDS: 0.42 Total: -20.77 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -0.38 Total: -9.56 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.95 Total: 14.85 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -24.98 -5.97 -30.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261136570.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.096 kcal (2) G-P(sol) polarization free energy of solvation -24.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds