Wall clock time and date at job start Mon Mar 30 2020 01:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46927 * 2 1 4 4 C 1.52992 * 109.47173 * 119.99276 * 2 1 3 5 5 C 1.50697 * 109.54702 * 300.00889 * 4 2 1 6 6 H 1.08000 * 119.99606 * 274.80299 * 5 4 2 7 7 C 1.37879 * 120.00398 * 94.80752 * 5 4 2 8 8 N 1.31508 * 119.99487 * 328.73683 * 7 5 4 9 9 Si 1.86801 * 120.00235 * 148.73950 * 7 5 4 10 10 H 1.48496 * 109.46951 * 179.97438 * 9 7 5 11 11 H 1.48504 * 109.46685 * 299.99964 * 9 7 5 12 12 H 1.48503 * 109.46968 * 59.99463 * 9 7 5 13 13 C 1.53178 * 109.54097 * 60.18260 * 4 2 1 14 14 C 1.53285 * 109.06717 * 176.85133 * 13 4 2 15 15 O 1.42907 * 109.46044 * 302.44489 * 14 13 4 16 16 C 1.42906 * 114.09554 * 61.15610 * 15 14 13 17 17 C 1.53094 * 109.41333 * 298.84321 * 16 15 14 18 18 H 1.09003 * 109.46861 * 60.00621 * 1 2 3 19 19 H 1.09001 * 109.46697 * 179.97438 * 1 2 3 20 20 H 1.08992 * 109.47299 * 300.00275 * 1 2 3 21 21 H 1.08996 * 109.47488 * 240.00453 * 2 1 3 22 22 H 1.09005 * 109.47316 * 179.97438 * 3 2 1 23 23 H 1.09004 * 109.47092 * 299.99878 * 3 2 1 24 24 H 1.09001 * 109.47453 * 59.99550 * 3 2 1 25 25 H 0.97001 * 119.99708 * 180.02562 * 8 7 5 26 26 H 1.08996 * 109.52673 * 296.84098 * 13 4 2 27 27 H 1.09008 * 109.52303 * 57.03019 * 13 4 2 28 28 H 1.08999 * 109.46053 * 182.45008 * 14 13 4 29 29 H 1.08994 * 109.46514 * 62.44619 * 14 13 4 30 30 H 1.09002 * 109.47985 * 178.86188 * 16 15 14 31 31 H 1.08997 * 109.48990 * 58.82696 * 16 15 14 32 32 H 1.08995 * 109.52240 * 297.70200 * 17 16 15 33 33 H 1.09007 * 109.57322 * 177.55095 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.5385 -0.0120 2.4808 6 1 2.0828 0.8326 2.8769 7 6 0.3848 -0.4414 3.1019 8 7 -0.5799 -0.9858 2.3931 9 14 0.1921 -0.2497 4.9500 10 1 -1.1285 -0.7848 5.3681 11 1 1.2719 -0.9997 5.6406 12 1 0.2797 1.1883 5.3103 13 6 1.5341 -2.1669 1.2488 14 6 2.1150 -2.9011 2.4624 15 8 3.5421 -2.8414 2.4168 16 6 4.0723 -1.5151 2.4614 17 6 3.5718 -0.7259 1.2488 18 1 -0.3633 0.5138 -0.8901 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 1.8934 -0.5137 -0.8900 22 1 3.1300 1.4426 0.0005 23 1 1.6766 1.9564 -0.8900 24 1 1.6766 1.9564 0.8899 25 1 -1.3917 -1.2876 2.8300 26 1 0.4455 -2.1719 1.3041 27 1 1.8555 -2.6650 0.3340 28 1 1.7941 -3.9426 2.4446 29 1 1.7605 -2.4270 3.3776 30 1 5.1613 -1.5581 2.4428 31 1 3.7435 -1.0226 3.3765 32 1 3.9343 -1.1949 0.3341 33 1 3.9393 0.2989 1.3030 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261136570.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:53 Heat of formation + Delta-G solvation = -66.219720 kcal Electronic energy + Delta-G solvation = -14215.868029 eV Core-core repulsion = 12047.928469 eV Total energy + Delta-G solvation = -2167.939560 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.54128 -37.28686 -34.10933 -32.09629 -31.40420 -27.70554 -27.27417 -25.13178 -23.79230 -21.27049 -20.33376 -17.67304 -16.89218 -16.55213 -16.32683 -15.65365 -14.83447 -14.80812 -14.57121 -14.13950 -13.55504 -13.34610 -12.83601 -12.72504 -12.47089 -12.30075 -12.06945 -11.98013 -11.87921 -11.52906 -11.34151 -10.73401 -10.55018 -10.50202 -10.19623 -9.62161 -7.99379 -5.91727 1.39991 1.47891 1.52411 2.49652 3.11874 3.25120 4.29527 4.36679 4.53529 4.59481 4.68460 4.73163 4.80598 4.85833 4.90675 5.06646 5.14981 5.25610 5.29845 5.31884 5.40331 5.53772 5.63158 5.67798 5.85384 5.89888 6.02763 6.23161 6.35483 6.57500 6.64123 7.03833 7.61487 8.93964 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.026493 B = 0.021928 C = 0.015955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.612924 B = 1276.584696 C = 1754.481548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.078 4.078 3 C -0.124 4.124 4 C 0.066 3.934 5 C -0.517 4.517 6 H 0.044 0.956 7 C 0.056 3.944 8 N -0.857 5.857 9 Si 0.894 3.106 10 H -0.289 1.289 11 H -0.282 1.282 12 H -0.282 1.282 13 C -0.152 4.152 14 C 0.076 3.924 15 O -0.411 6.411 16 C 0.071 3.929 17 C -0.134 4.134 18 H 0.012 0.988 19 H 0.038 0.962 20 H 0.062 0.938 21 H 0.027 0.973 22 H 0.048 0.952 23 H 0.042 0.958 24 H 0.043 0.957 25 H 0.257 0.743 26 H 0.113 0.887 27 H 0.020 0.980 28 H 0.076 0.924 29 H 0.037 0.963 30 H 0.096 0.904 31 H 0.040 0.960 32 H 0.045 0.955 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.845 0.088 -1.746 4.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.097 4.097 3 C -0.181 4.181 4 C 0.065 3.935 5 C -0.554 4.554 6 H 0.062 0.938 7 C -0.146 4.146 8 N -0.494 5.494 9 Si 0.722 3.278 10 H -0.215 1.215 11 H -0.208 1.208 12 H -0.208 1.208 13 C -0.190 4.190 14 C -0.001 4.001 15 O -0.331 6.331 16 C -0.005 4.005 17 C -0.171 4.171 18 H 0.031 0.969 19 H 0.057 0.943 20 H 0.080 0.920 21 H 0.046 0.954 22 H 0.067 0.933 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.130 0.870 27 H 0.039 0.961 28 H 0.094 0.906 29 H 0.055 0.945 30 H 0.114 0.886 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.758 -0.150 -1.745 4.146 hybrid contribution -0.516 0.305 1.147 1.294 sum 3.242 0.154 -0.598 3.300 Atomic orbital electron populations 1.21584 0.95138 1.00478 0.98564 1.21170 0.96215 0.95733 0.96578 1.21654 0.99735 0.96627 1.00110 1.18285 0.90162 0.91826 0.93213 1.20840 1.08396 1.15423 1.10749 0.93793 1.25054 0.94908 0.95956 0.98699 1.70269 1.04279 1.40709 1.34144 0.86644 0.76736 0.78007 0.86432 1.21467 1.20785 1.20776 1.22452 1.05647 0.96381 0.94517 1.22447 0.79854 0.99038 0.98715 1.87677 1.21764 1.28507 1.95163 1.22490 0.97534 0.82644 0.97847 1.22176 0.98483 0.99403 0.97084 0.96904 0.94313 0.91956 0.95450 0.93303 0.93850 0.93745 0.93274 0.86968 0.96086 0.90599 0.94519 0.88560 0.94198 0.93613 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.49 7.46 71.98 0.54 -3.95 16 2 C -0.08 -3.33 2.28 -10.79 -0.02 -3.35 16 3 C -0.12 -4.75 8.60 71.98 0.62 -4.13 16 4 C 0.07 2.94 0.28 -52.81 -0.01 2.92 16 5 C -0.52 -25.28 4.43 25.60 0.11 -25.17 16 6 H 0.04 2.23 7.93 -2.91 -0.02 2.21 16 7 C 0.06 2.75 3.11 84.66 0.26 3.02 16 8 N -0.86 -42.72 7.55 21.45 0.16 -42.56 16 9 Si 0.89 40.52 29.13 68.60 2.00 42.52 16 10 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 13 C -0.15 -6.98 4.03 30.75 0.12 -6.85 16 14 C 0.08 3.36 6.54 72.08 0.47 3.83 16 15 O -0.41 -17.80 10.77 -148.98 -1.60 -19.41 16 16 C 0.07 2.81 6.62 72.01 0.48 3.28 16 17 C -0.13 -5.36 4.47 30.68 0.14 -5.22 16 18 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 19 H 0.04 1.80 6.13 -2.39 -0.01 1.79 16 20 H 0.06 3.09 5.64 -2.39 -0.01 3.08 16 21 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 22 H 0.05 1.71 6.51 -2.38 -0.02 1.70 16 23 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 24 H 0.04 1.84 7.18 -2.39 -0.02 1.82 16 25 H 0.26 12.54 8.31 -92.71 -0.77 11.77 16 26 H 0.11 5.55 3.95 -2.39 -0.01 5.54 16 27 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 28 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 29 H 0.04 1.75 5.82 -2.39 -0.01 1.74 16 30 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 31 H 0.04 1.68 7.38 -2.39 -0.02 1.66 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.06 2.46 6.62 -2.38 -0.02 2.45 16 Total: -1.00 -50.48 239.04 4.33 -46.15 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 1.07 Total: 8.93 kcal Atomic # 6 Polarization: -38.34 SS G_CDS: 2.70 Total: -35.63 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: 0.16 Total: -42.56 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -1.60 Total: -19.41 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.00 Total: 42.52 kcal Total: -50.48 4.33 -46.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261136570.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.073 kcal (2) G-P(sol) polarization free energy of solvation -50.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds