Wall clock time and date at job start Mon Mar 30 2020 01:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47644 * 2 1 4 4 C 1.53006 * 109.46691 * 240.00313 * 2 1 3 5 5 C 1.50702 * 109.51975 * 300.12340 * 4 2 1 6 6 H 1.08003 * 119.99432 * 117.23967 * 5 4 2 7 7 C 1.37876 * 120.00196 * 297.23571 * 5 4 2 8 8 N 1.31508 * 120.00125 * 6.47310 * 7 5 4 9 9 Si 1.86805 * 119.99890 * 186.47058 * 7 5 4 10 10 H 1.48496 * 109.47024 * 59.99938 * 9 7 5 11 11 H 1.48494 * 109.47140 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46969 * 300.00023 * 9 7 5 13 13 C 1.53176 * 109.52335 * 180.02562 * 4 2 1 14 14 C 1.53175 * 109.04039 * 183.11098 * 13 4 2 15 15 C 1.53099 * 109.15746 * 56.98038 * 14 13 4 16 16 O 1.42905 * 109.41469 * 302.38988 * 15 14 13 17 17 C 1.42898 * 114.09568 * 61.16141 * 16 15 14 18 18 H 1.08998 * 109.47620 * 180.02562 * 1 2 3 19 19 H 1.08997 * 109.47406 * 59.99516 * 1 2 3 20 20 H 1.09007 * 109.46541 * 299.99606 * 1 2 3 21 21 H 1.08997 * 109.47406 * 120.00483 * 2 1 3 22 22 H 1.09002 * 109.46921 * 60.00106 * 3 2 1 23 23 H 1.08992 * 109.47375 * 180.02562 * 3 2 1 24 24 H 1.09006 * 109.46933 * 300.00628 * 3 2 1 25 25 H 0.96999 * 120.00071 * 179.97438 * 8 7 5 26 26 H 1.09004 * 109.54267 * 302.98455 * 13 4 2 27 27 H 1.09001 * 109.54492 * 63.24046 * 13 4 2 28 28 H 1.09000 * 109.52787 * 176.88010 * 14 13 4 29 29 H 1.08997 * 109.52288 * 297.08143 * 14 13 4 30 30 H 1.09001 * 109.48353 * 62.37937 * 15 14 13 31 31 H 1.09010 * 109.47544 * 182.39952 * 15 14 13 32 32 H 1.09004 * 109.47989 * 178.85463 * 17 16 15 33 33 H 1.09001 * 109.47867 * 58.82403 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.5356 -2.1414 -1.2520 6 1 0.8789 -2.4796 -2.0399 7 6 1.9126 -3.0087 -0.2488 8 7 2.6066 -2.5661 0.7768 9 14 1.4377 -4.8128 -0.3464 10 1 2.0179 -5.4115 -1.5752 11 1 1.9589 -5.5271 0.8465 12 1 -0.0419 -4.9335 -0.3879 13 6 3.5716 -0.7225 -1.2503 14 6 4.0700 -1.3776 -2.5422 15 6 3.4888 -0.6264 -3.7430 16 8 2.0619 -0.6366 -3.6644 17 6 1.5372 0.0045 -2.5000 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3633 0.5138 0.8901 21 1 1.8934 -0.5139 0.8899 22 1 1.6768 1.9563 0.8900 23 1 3.1300 1.4424 -0.0005 24 1 1.6767 1.9563 -0.8900 25 1 2.8715 -3.1762 1.4828 26 1 3.9372 0.3030 -1.1969 27 1 3.9364 -1.2861 -0.3916 28 1 5.1585 -1.3330 -2.5769 29 1 3.7458 -2.4178 -2.5717 30 1 3.8460 0.4034 -3.7352 31 1 3.8057 -1.1141 -4.6649 32 1 0.4480 -0.0288 -2.5265 33 1 1.8689 1.0425 -2.4760 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261137540.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:50 Heat of formation + Delta-G solvation = -63.777376 kcal Electronic energy + Delta-G solvation = -14073.325594 eV Core-core repulsion = 11905.491942 eV Total energy + Delta-G solvation = -2167.833652 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.79344 -35.28668 -32.24288 -31.34238 -28.69397 -26.49983 -24.72755 -23.77545 -22.40092 -19.68861 -18.08409 -15.98818 -15.23104 -14.73412 -14.46263 -13.70568 -13.41807 -13.06519 -12.71807 -12.12300 -11.77144 -11.59534 -11.39511 -11.03405 -10.83868 -10.61230 -10.57543 -10.10961 -9.99461 -9.67229 -9.50200 -9.38605 -9.05477 -8.46515 -8.20313 -8.05571 -5.88878 -3.94060 3.35322 3.40016 3.44535 4.48485 4.91769 5.36009 5.86919 6.01143 6.10364 6.13864 6.18992 6.22602 6.33432 6.49927 6.54836 6.59099 6.64322 6.77520 6.80154 6.93697 6.99385 7.04849 7.37797 7.43466 7.54102 7.72421 7.84843 8.00138 8.16135 8.35235 8.57878 9.04773 9.66960 11.11559 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.029298 B = 0.018543 C = 0.014517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.463691 B = 1509.601284 C = 1928.364818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.088 4.088 3 C -0.150 4.150 4 C 0.051 3.949 5 C -0.481 4.481 6 H 0.055 0.945 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.883 3.117 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.279 1.279 13 C -0.109 4.109 14 C -0.142 4.142 15 C 0.069 3.931 16 O -0.385 6.385 17 C 0.071 3.929 18 H 0.062 0.938 19 H 0.031 0.969 20 H 0.024 0.976 21 H 0.105 0.895 22 H 0.033 0.967 23 H 0.047 0.953 24 H 0.037 0.963 25 H 0.258 0.742 26 H 0.021 0.979 27 H 0.093 0.907 28 H 0.040 0.960 29 H 0.076 0.924 30 H 0.029 0.971 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.770 4.282 -2.751 5.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.107 4.107 3 C -0.207 4.207 4 C 0.051 3.949 5 C -0.519 4.519 6 H 0.074 0.926 7 C -0.136 4.136 8 N -0.529 5.529 9 Si 0.712 3.288 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.205 1.205 13 C -0.147 4.147 14 C -0.179 4.179 15 C -0.008 4.008 16 O -0.304 6.304 17 C -0.005 4.005 18 H 0.081 0.919 19 H 0.050 0.950 20 H 0.043 0.957 21 H 0.123 0.877 22 H 0.052 0.948 23 H 0.066 0.934 24 H 0.056 0.944 25 H 0.068 0.932 26 H 0.039 0.961 27 H 0.112 0.888 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.047 0.953 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 0.729 4.124 -2.717 4.992 hybrid contribution -0.001 -0.887 0.215 0.913 sum 0.728 3.237 -2.503 4.156 Atomic orbital electron populations 1.21700 0.97527 1.01417 0.97852 1.21166 0.93890 0.92390 1.03205 1.22053 1.00492 0.98985 0.99160 1.18655 0.91922 0.94683 0.89665 1.20921 1.28215 0.94396 1.08363 0.92633 1.24849 0.95493 0.97979 0.95295 1.69771 1.39296 1.34291 1.09528 0.86795 0.78752 0.86081 0.77186 1.20469 1.21595 1.20496 1.21651 0.98318 0.96981 0.97759 1.22042 0.97522 1.02020 0.96355 1.22375 0.82500 0.97811 0.98148 1.87791 1.19455 1.79886 1.43260 1.22838 0.97788 0.93177 0.86716 0.91891 0.95016 0.95728 0.87739 0.94828 0.93445 0.94360 0.93212 0.96076 0.88843 0.94080 0.90574 0.95274 0.91016 0.90485 0.95870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 8.60 37.16 0.32 -2.35 16 2 C -0.09 -1.96 2.10 -90.62 -0.19 -2.15 16 3 C -0.15 -2.89 8.49 37.16 0.32 -2.57 16 4 C 0.05 1.20 0.06 -155.52 -0.01 1.19 16 5 C -0.48 -12.53 5.37 -34.44 -0.18 -12.72 16 6 H 0.06 1.52 7.76 -52.48 -0.41 1.11 16 7 C 0.06 1.68 5.11 -17.82 -0.09 1.59 16 8 N -0.89 -23.78 9.40 55.43 0.52 -23.26 16 9 Si 0.88 21.07 29.54 -169.99 -5.02 16.05 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C -0.11 -2.51 4.33 -26.55 -0.12 -2.62 16 14 C -0.14 -2.99 5.88 -26.59 -0.16 -3.15 16 15 C 0.07 1.34 6.84 37.21 0.25 1.60 16 16 O -0.39 -8.61 10.45 -35.23 -0.37 -8.98 16 17 C 0.07 1.54 4.78 37.20 0.18 1.72 16 18 H 0.06 1.43 7.22 -51.93 -0.37 1.06 16 19 H 0.03 0.61 6.50 -51.93 -0.34 0.27 16 20 H 0.02 0.46 8.14 -51.92 -0.42 0.03 16 21 H 0.10 2.66 6.06 -51.93 -0.31 2.34 16 22 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.91 6.37 -51.93 -0.33 0.58 16 24 H 0.04 0.69 6.37 -51.93 -0.33 0.36 16 25 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 26 H 0.02 0.45 6.29 -51.93 -0.33 0.12 16 27 H 0.09 2.39 6.05 -51.93 -0.31 2.07 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.08 1.79 7.39 -51.93 -0.38 1.41 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 32 H 0.08 1.67 6.58 -51.93 -0.34 1.32 16 33 H 0.02 0.47 6.30 -51.93 -0.33 0.15 16 LS Contribution 244.18 15.07 3.68 3.68 Total: -1.00 -26.50 244.18 -5.91 -32.41 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -5.04 Total: -0.43 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: 0.32 Total: -19.47 kcal Atomic # 7 Polarization: -23.78 SS G_CDS: 0.52 Total: -23.26 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -0.37 Total: -8.98 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -26.50 -5.91 -32.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261137540.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.372 kcal (2) G-P(sol) polarization free energy of solvation -26.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds