Wall clock time and date at job start Mon Mar 30 2020 01:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47644 * 2 1 4 4 C 1.53006 * 109.46691 * 240.00313 * 2 1 3 5 5 C 1.50702 * 109.51975 * 300.12340 * 4 2 1 6 6 H 1.08003 * 119.99432 * 117.23967 * 5 4 2 7 7 C 1.37876 * 120.00196 * 297.23571 * 5 4 2 8 8 N 1.31508 * 120.00125 * 6.47310 * 7 5 4 9 9 Si 1.86805 * 119.99890 * 186.47058 * 7 5 4 10 10 H 1.48496 * 109.47024 * 59.99938 * 9 7 5 11 11 H 1.48494 * 109.47140 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46969 * 300.00023 * 9 7 5 13 13 C 1.53176 * 109.52335 * 180.02562 * 4 2 1 14 14 C 1.53175 * 109.04039 * 183.11098 * 13 4 2 15 15 C 1.53099 * 109.15746 * 56.98038 * 14 13 4 16 16 O 1.42905 * 109.41469 * 302.38988 * 15 14 13 17 17 C 1.42898 * 114.09568 * 61.16141 * 16 15 14 18 18 H 1.08998 * 109.47620 * 180.02562 * 1 2 3 19 19 H 1.08997 * 109.47406 * 59.99516 * 1 2 3 20 20 H 1.09007 * 109.46541 * 299.99606 * 1 2 3 21 21 H 1.08997 * 109.47406 * 120.00483 * 2 1 3 22 22 H 1.09002 * 109.46921 * 60.00106 * 3 2 1 23 23 H 1.08992 * 109.47375 * 180.02562 * 3 2 1 24 24 H 1.09006 * 109.46933 * 300.00628 * 3 2 1 25 25 H 0.96999 * 120.00071 * 179.97438 * 8 7 5 26 26 H 1.09004 * 109.54267 * 302.98455 * 13 4 2 27 27 H 1.09001 * 109.54492 * 63.24046 * 13 4 2 28 28 H 1.09000 * 109.52787 * 176.88010 * 14 13 4 29 29 H 1.08997 * 109.52288 * 297.08143 * 14 13 4 30 30 H 1.09001 * 109.48353 * 62.37937 * 15 14 13 31 31 H 1.09010 * 109.47544 * 182.39952 * 15 14 13 32 32 H 1.09004 * 109.47989 * 178.85463 * 17 16 15 33 33 H 1.09001 * 109.47867 * 58.82403 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.5356 -2.1414 -1.2520 6 1 0.8789 -2.4796 -2.0399 7 6 1.9126 -3.0087 -0.2488 8 7 2.6066 -2.5661 0.7768 9 14 1.4377 -4.8128 -0.3464 10 1 2.0179 -5.4115 -1.5752 11 1 1.9589 -5.5271 0.8465 12 1 -0.0419 -4.9335 -0.3879 13 6 3.5716 -0.7225 -1.2503 14 6 4.0700 -1.3776 -2.5422 15 6 3.4888 -0.6264 -3.7430 16 8 2.0619 -0.6366 -3.6644 17 6 1.5372 0.0045 -2.5000 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3633 0.5138 0.8901 21 1 1.8934 -0.5139 0.8899 22 1 1.6768 1.9563 0.8900 23 1 3.1300 1.4424 -0.0005 24 1 1.6767 1.9563 -0.8900 25 1 2.8715 -3.1762 1.4828 26 1 3.9372 0.3030 -1.1969 27 1 3.9364 -1.2861 -0.3916 28 1 5.1585 -1.3330 -2.5769 29 1 3.7458 -2.4178 -2.5717 30 1 3.8460 0.4034 -3.7352 31 1 3.8057 -1.1141 -4.6649 32 1 0.4480 -0.0288 -2.5265 33 1 1.8689 1.0425 -2.4760 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261137540.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:50 Heat of formation + Delta-G solvation = -78.600195 kcal Electronic energy + Delta-G solvation = -14073.968360 eV Core-core repulsion = 11905.491942 eV Total energy + Delta-G solvation = -2168.476418 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.51864 -37.00734 -34.12334 -33.13304 -30.41854 -28.17984 -26.61287 -25.47056 -24.12331 -21.39689 -19.91833 -17.83191 -16.90672 -16.70181 -16.20818 -15.35556 -15.22109 -14.74805 -14.48723 -13.80419 -13.41461 -13.36531 -13.13581 -12.77696 -12.71005 -12.47940 -12.30845 -11.85187 -11.80143 -11.45498 -11.22434 -11.10223 -10.84477 -10.30542 -10.13168 -9.80588 -7.89644 -5.99186 1.41284 1.43897 1.49495 2.50128 3.26493 3.37441 4.30059 4.37827 4.44759 4.48984 4.61672 4.66364 4.67853 4.83053 4.90712 4.95084 5.01484 5.10769 5.20425 5.24897 5.30583 5.39617 5.62682 5.65438 5.77774 5.84423 5.94999 6.21228 6.31427 6.60121 6.68282 7.03529 7.62603 9.07115 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.029298 B = 0.018543 C = 0.014517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.463691 B = 1509.601284 C = 1928.364818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.090 4.090 3 C -0.141 4.141 4 C 0.044 3.956 5 C -0.485 4.485 6 H 0.035 0.965 7 C 0.029 3.971 8 N -0.901 5.901 9 Si 0.925 3.075 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.279 1.279 13 C -0.107 4.107 14 C -0.140 4.140 15 C 0.067 3.933 16 O -0.405 6.405 17 C 0.075 3.925 18 H 0.034 0.966 19 H 0.047 0.953 20 H 0.041 0.959 21 H 0.070 0.930 22 H 0.049 0.951 23 H 0.045 0.955 24 H 0.053 0.947 25 H 0.254 0.746 26 H 0.037 0.963 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.043 0.957 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.976 5.530 -3.511 6.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.109 4.109 3 C -0.198 4.198 4 C 0.044 3.956 5 C -0.523 4.523 6 H 0.053 0.947 7 C -0.169 4.169 8 N -0.542 5.542 9 Si 0.753 3.247 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.205 1.205 13 C -0.145 4.145 14 C -0.178 4.178 15 C -0.010 4.010 16 O -0.324 6.324 17 C -0.001 4.001 18 H 0.053 0.947 19 H 0.066 0.934 20 H 0.060 0.940 21 H 0.088 0.912 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.934 5.371 -3.480 6.468 hybrid contribution -0.052 -1.282 0.444 1.358 sum 0.882 4.089 -3.036 5.169 Atomic orbital electron populations 1.21612 0.96692 1.00099 0.99488 1.21062 0.94666 0.94034 1.01120 1.21933 1.00305 0.96856 1.00723 1.18706 0.92269 0.93508 0.91116 1.21029 1.27666 0.96228 1.07412 0.94715 1.25296 0.95915 1.00346 0.95371 1.69899 1.39930 1.34637 1.09696 0.86139 0.78324 0.83372 0.76862 1.20770 1.21406 1.20506 1.21558 0.98033 0.97479 0.97457 1.21997 0.99105 1.00174 0.96498 1.22560 0.80974 0.99186 0.98250 1.87765 1.21199 1.80192 1.43229 1.22772 0.97717 0.93885 0.85754 0.94690 0.93415 0.93972 0.91166 0.93242 0.93645 0.92787 0.93640 0.94461 0.91953 0.91685 0.93776 0.92908 0.88579 0.90800 0.93790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.95 8.60 71.98 0.62 -4.33 16 2 C -0.09 -3.92 2.10 -10.79 -0.02 -3.94 16 3 C -0.14 -5.06 8.49 71.98 0.61 -4.45 16 4 C 0.04 2.04 0.06 -52.84 0.00 2.04 16 5 C -0.48 -25.50 5.37 25.60 0.14 -25.37 16 6 H 0.03 1.93 7.76 -2.91 -0.02 1.91 16 7 C 0.03 1.54 5.11 84.66 0.43 1.98 16 8 N -0.90 -49.01 9.40 21.45 0.20 -48.80 16 9 Si 0.92 43.75 29.54 68.60 2.03 45.77 16 10 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 11 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 13 C -0.11 -4.81 4.33 30.71 0.13 -4.68 16 14 C -0.14 -5.71 5.88 30.69 0.18 -5.53 16 15 C 0.07 2.41 6.84 72.02 0.49 2.91 16 16 O -0.40 -17.26 10.45 -148.98 -1.56 -18.82 16 17 C 0.07 3.10 4.78 72.01 0.34 3.45 16 18 H 0.03 1.58 7.22 -2.39 -0.02 1.56 16 19 H 0.05 1.75 6.50 -2.39 -0.02 1.74 16 20 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 21 H 0.07 3.58 6.06 -2.39 -0.01 3.57 16 22 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.04 1.63 6.37 -2.39 -0.02 1.61 16 24 H 0.05 1.76 6.37 -2.38 -0.02 1.74 16 25 H 0.25 13.54 8.31 -92.71 -0.77 12.77 16 26 H 0.04 1.52 6.29 -2.38 -0.01 1.50 16 27 H 0.06 3.19 6.05 -2.39 -0.01 3.18 16 28 H 0.06 2.29 8.14 -2.39 -0.02 2.28 16 29 H 0.04 2.06 7.39 -2.39 -0.02 2.04 16 30 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.10 2.99 8.14 -2.38 -0.02 2.97 16 32 H 0.07 3.07 6.58 -2.38 -0.02 3.06 16 33 H 0.04 1.64 6.30 -2.39 -0.02 1.62 16 Total: -1.00 -55.97 244.18 4.67 -51.30 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 1.08 Total: 8.47 kcal Atomic # 6 Polarization: -40.85 SS G_CDS: 2.93 Total: -37.93 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: 0.20 Total: -48.80 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -1.56 Total: -18.82 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -55.97 4.67 -51.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261137540.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.297 kcal (2) G-P(sol) polarization free energy of solvation -55.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds