Wall clock time and date at job start Mon Mar 30 2020 01:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46908 * 2 1 4 4 C 1.52990 * 109.47414 * 120.00709 * 2 1 3 5 5 C 1.50700 * 109.52399 * 56.64530 * 4 2 1 6 6 H 1.08006 * 120.00033 * 244.94004 * 5 4 2 7 7 C 1.37870 * 120.00045 * 64.94266 * 5 4 2 8 8 N 1.31516 * 120.00011 * 351.68867 * 7 5 4 9 9 Si 1.86808 * 120.00003 * 171.68668 * 7 5 4 10 10 H 1.48505 * 109.46731 * 60.00016 * 9 7 5 11 11 H 1.48495 * 109.47279 * 300.00259 * 9 7 5 12 12 H 1.48501 * 109.47228 * 179.97438 * 9 7 5 13 13 C 1.53181 * 109.52399 * 176.76875 * 4 2 1 14 14 C 1.53309 * 108.96891 * 176.88571 * 13 4 2 15 15 C 1.53093 * 109.19802 * 303.06196 * 14 13 4 16 16 O 1.42904 * 109.41409 * 57.60189 * 15 14 13 17 17 C 1.42901 * 114.10144 * 298.84295 * 16 15 14 18 18 H 1.08993 * 109.47591 * 59.99296 * 1 2 3 19 19 H 1.09002 * 109.47086 * 179.97438 * 1 2 3 20 20 H 1.09008 * 109.46469 * 299.99383 * 1 2 3 21 21 H 1.09008 * 109.46469 * 240.00617 * 2 1 3 22 22 H 1.09003 * 109.46954 * 180.02562 * 3 2 1 23 23 H 1.08994 * 109.47229 * 300.00303 * 3 2 1 24 24 H 1.08998 * 109.46921 * 60.01000 * 3 2 1 25 25 H 0.96996 * 119.99913 * 6.00156 * 8 7 5 26 26 H 1.08999 * 109.54272 * 296.81705 * 13 4 2 27 27 H 1.09008 * 109.54134 * 57.07760 * 13 4 2 28 28 H 1.09001 * 109.50657 * 183.14743 * 14 13 4 29 29 H 1.08996 * 109.55548 * 63.01004 * 14 13 4 30 30 H 1.09005 * 109.48001 * 297.62472 * 15 14 13 31 31 H 1.08993 * 109.48501 * 177.59150 * 15 14 13 32 32 H 1.08996 * 109.48422 * 301.17623 * 17 16 15 33 33 H 1.09001 * 109.48934 * 181.14038 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2490 5 6 1.4717 -2.1164 1.2924 6 1 0.7939 -2.3990 2.0843 7 6 1.8170 -3.0319 0.3211 8 7 2.5078 -2.6468 -0.7297 9 14 1.3036 -4.8194 0.4975 10 1 -0.1776 -4.9049 0.5610 11 1 1.8856 -5.3809 1.7430 12 1 1.7941 -5.5930 -0.6713 13 6 3.5697 -0.7929 1.2102 14 6 4.0710 -1.4475 2.5026 15 6 3.5557 -0.6501 3.7036 16 8 2.1283 -0.5961 3.6608 17 6 1.6033 0.0482 2.4984 18 1 -0.3634 0.5139 -0.8898 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3632 0.5138 0.8901 21 1 1.8933 -0.5138 -0.8901 22 1 3.1300 1.4425 -0.0005 23 1 1.6766 1.9563 -0.8899 24 1 1.6768 1.9562 0.8901 25 1 2.8491 -1.7403 -0.7801 26 1 3.8853 -1.3869 0.3525 27 1 3.9799 0.2138 1.1288 28 1 5.1610 -1.4523 2.5092 29 1 3.7019 -2.4715 2.5599 30 1 3.9589 0.3620 3.6679 31 1 3.8737 -1.1358 4.6260 32 1 1.9809 1.0693 2.4469 33 1 0.5147 0.0653 2.5526 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261137542.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:52 Heat of formation + Delta-G solvation = -56.546589 kcal Electronic energy + Delta-G solvation = -14132.933961 eV Core-core repulsion = 11965.413859 eV Total energy + Delta-G solvation = -2167.520102 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.08318 -35.62858 -32.42776 -31.28441 -28.71766 -26.62444 -24.48726 -23.89897 -22.69137 -19.92141 -18.10807 -16.88817 -15.40546 -14.77629 -14.02371 -13.72766 -13.58267 -13.33995 -12.85829 -12.24461 -11.93817 -11.66489 -11.46393 -11.09444 -10.89673 -10.70736 -10.45852 -10.20755 -10.02890 -9.85152 -9.73964 -9.39990 -9.20046 -8.44789 -8.19246 -8.03051 -6.10875 -3.91341 3.47962 3.50020 3.67941 4.58085 4.81781 5.43530 5.74203 5.85009 5.89946 5.94761 6.01862 6.05839 6.14189 6.34186 6.37330 6.43391 6.49830 6.59387 6.64920 6.76315 6.77559 6.84183 7.15709 7.24110 7.31600 7.38322 7.57600 7.65770 8.14412 8.40323 8.58109 8.99184 9.74544 11.13083 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.029306 B = 0.018784 C = 0.014596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.199264 B = 1490.292035 C = 1917.864118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.096 4.096 3 C -0.151 4.151 4 C 0.035 3.965 5 C -0.560 4.560 6 H 0.050 0.950 7 C 0.023 3.977 8 N -0.922 5.922 9 Si 1.058 2.942 10 H -0.290 1.290 11 H -0.290 1.290 12 H -0.286 1.286 13 C -0.122 4.122 14 C -0.139 4.139 15 C 0.070 3.930 16 O -0.382 6.382 17 C 0.080 3.920 18 H 0.026 0.974 19 H 0.067 0.933 20 H 0.035 0.965 21 H 0.081 0.919 22 H 0.046 0.954 23 H 0.037 0.963 24 H 0.044 0.956 25 H 0.278 0.722 26 H 0.079 0.921 27 H 0.027 0.973 28 H 0.043 0.957 29 H 0.079 0.921 30 H 0.030 0.970 31 H 0.075 0.925 32 H 0.023 0.977 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.749 4.598 3.464 5.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.115 4.115 3 C -0.209 4.209 4 C 0.034 3.966 5 C -0.598 4.598 6 H 0.068 0.932 7 C -0.180 4.180 8 N -0.564 5.564 9 Si 0.887 3.113 10 H -0.217 1.217 11 H -0.217 1.217 12 H -0.211 1.211 13 C -0.160 4.160 14 C -0.177 4.177 15 C -0.008 4.008 16 O -0.301 6.301 17 C 0.003 3.997 18 H 0.045 0.955 19 H 0.086 0.914 20 H 0.054 0.946 21 H 0.099 0.901 22 H 0.065 0.935 23 H 0.056 0.944 24 H 0.063 0.937 25 H 0.095 0.905 26 H 0.097 0.903 27 H 0.046 0.954 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.041 0.959 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.644 3.059 2.827 4.215 hybrid contribution 0.222 1.595 0.567 1.707 sum 0.867 4.654 3.394 5.825 Atomic orbital electron populations 1.21650 0.96432 1.02018 0.98136 1.21340 0.95330 0.93069 1.01807 1.22049 1.00416 0.98556 0.99835 1.18854 0.91654 0.95751 0.90330 1.21673 1.29641 0.95182 1.13335 0.93194 1.25528 0.95795 1.04281 0.92368 1.70893 1.35853 1.22416 1.27198 0.83703 0.76015 0.75855 0.75699 1.21698 1.21651 1.21127 1.21863 0.98511 0.97624 0.97991 1.22010 0.97890 1.01944 0.95820 1.22365 0.82490 0.97690 0.98212 1.87806 1.19446 1.80412 1.42401 1.22681 0.97784 0.92791 0.86398 0.95523 0.91363 0.94621 0.90056 0.93467 0.94394 0.93695 0.90536 0.90265 0.95433 0.93793 0.90214 0.95225 0.90706 0.95858 0.90389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 8.63 37.16 0.32 -2.30 16 2 C -0.10 -2.12 2.03 -90.62 -0.18 -2.30 16 3 C -0.15 -2.83 8.48 37.16 0.32 -2.51 16 4 C 0.03 0.81 0.06 -155.52 -0.01 0.80 16 5 C -0.56 -14.79 5.20 -34.44 -0.18 -14.97 16 6 H 0.05 1.39 7.76 -52.48 -0.41 0.98 16 7 C 0.02 0.63 5.10 -17.82 -0.09 0.54 16 8 N -0.92 -26.08 12.41 55.43 0.69 -25.39 16 9 Si 1.06 24.94 29.91 -169.99 -5.08 19.86 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 13 C -0.12 -2.76 4.26 -26.48 -0.11 -2.88 16 14 C -0.14 -2.93 5.87 -26.52 -0.16 -3.08 16 15 C 0.07 1.35 6.84 37.21 0.25 1.60 16 16 O -0.38 -8.53 10.45 -35.23 -0.37 -8.90 16 17 C 0.08 1.73 4.78 37.21 0.18 1.91 16 18 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 19 H 0.07 1.58 7.12 -51.93 -0.37 1.21 16 20 H 0.03 0.69 6.58 -51.92 -0.34 0.35 16 21 H 0.08 2.02 5.36 -51.92 -0.28 1.74 16 22 H 0.05 0.86 6.46 -51.93 -0.34 0.53 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.04 0.79 6.32 -51.93 -0.33 0.46 16 25 H 0.28 7.66 3.32 -40.82 -0.14 7.52 16 26 H 0.08 1.99 5.20 -51.93 -0.27 1.72 16 27 H 0.03 0.57 6.39 -51.92 -0.33 0.24 16 28 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 1.89 7.40 -51.93 -0.38 1.50 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.02 0.47 6.24 -51.93 -0.32 0.15 16 33 H 0.08 1.69 6.65 -51.93 -0.35 1.35 16 LS Contribution 240.85 15.07 3.63 3.63 Total: -1.00 -27.97 240.85 -5.56 -33.53 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -4.76 Total: 0.47 kcal Atomic # 6 Polarization: -23.53 SS G_CDS: 0.34 Total: -23.19 kcal Atomic # 7 Polarization: -26.08 SS G_CDS: 0.69 Total: -25.39 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: -0.37 Total: -8.90 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -5.08 Total: 19.86 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -27.97 -5.56 -33.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261137542.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.020 kcal (2) G-P(sol) polarization free energy of solvation -27.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds