Wall clock time and date at job start Mon Mar 30 2020 01:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46908 * 2 1 4 4 C 1.52990 * 109.47414 * 120.00709 * 2 1 3 5 5 C 1.50700 * 109.52399 * 56.64530 * 4 2 1 6 6 H 1.08006 * 120.00033 * 244.94004 * 5 4 2 7 7 C 1.37870 * 120.00045 * 64.94266 * 5 4 2 8 8 N 1.31516 * 120.00011 * 351.68867 * 7 5 4 9 9 Si 1.86808 * 120.00003 * 171.68668 * 7 5 4 10 10 H 1.48505 * 109.46731 * 60.00016 * 9 7 5 11 11 H 1.48495 * 109.47279 * 300.00259 * 9 7 5 12 12 H 1.48501 * 109.47228 * 179.97438 * 9 7 5 13 13 C 1.53181 * 109.52399 * 176.76875 * 4 2 1 14 14 C 1.53309 * 108.96891 * 176.88571 * 13 4 2 15 15 C 1.53093 * 109.19802 * 303.06196 * 14 13 4 16 16 O 1.42904 * 109.41409 * 57.60189 * 15 14 13 17 17 C 1.42901 * 114.10144 * 298.84295 * 16 15 14 18 18 H 1.08993 * 109.47591 * 59.99296 * 1 2 3 19 19 H 1.09002 * 109.47086 * 179.97438 * 1 2 3 20 20 H 1.09008 * 109.46469 * 299.99383 * 1 2 3 21 21 H 1.09008 * 109.46469 * 240.00617 * 2 1 3 22 22 H 1.09003 * 109.46954 * 180.02562 * 3 2 1 23 23 H 1.08994 * 109.47229 * 300.00303 * 3 2 1 24 24 H 1.08998 * 109.46921 * 60.01000 * 3 2 1 25 25 H 0.96996 * 119.99913 * 6.00156 * 8 7 5 26 26 H 1.08999 * 109.54272 * 296.81705 * 13 4 2 27 27 H 1.09008 * 109.54134 * 57.07760 * 13 4 2 28 28 H 1.09001 * 109.50657 * 183.14743 * 14 13 4 29 29 H 1.08996 * 109.55548 * 63.01004 * 14 13 4 30 30 H 1.09005 * 109.48001 * 297.62472 * 15 14 13 31 31 H 1.08993 * 109.48501 * 177.59150 * 15 14 13 32 32 H 1.08996 * 109.48422 * 301.17623 * 17 16 15 33 33 H 1.09001 * 109.48934 * 181.14038 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2490 5 6 1.4717 -2.1164 1.2924 6 1 0.7939 -2.3990 2.0843 7 6 1.8170 -3.0319 0.3211 8 7 2.5078 -2.6468 -0.7297 9 14 1.3036 -4.8194 0.4975 10 1 -0.1776 -4.9049 0.5610 11 1 1.8856 -5.3809 1.7430 12 1 1.7941 -5.5930 -0.6713 13 6 3.5697 -0.7929 1.2102 14 6 4.0710 -1.4475 2.5026 15 6 3.5557 -0.6501 3.7036 16 8 2.1283 -0.5961 3.6608 17 6 1.6033 0.0482 2.4984 18 1 -0.3634 0.5139 -0.8898 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3632 0.5138 0.8901 21 1 1.8933 -0.5138 -0.8901 22 1 3.1300 1.4425 -0.0005 23 1 1.6766 1.9563 -0.8899 24 1 1.6768 1.9562 0.8901 25 1 2.8491 -1.7403 -0.7801 26 1 3.8853 -1.3869 0.3525 27 1 3.9799 0.2138 1.1288 28 1 5.1610 -1.4523 2.5092 29 1 3.7019 -2.4715 2.5599 30 1 3.9589 0.3620 3.6679 31 1 3.8737 -1.1358 4.6260 32 1 1.9809 1.0693 2.4469 33 1 0.5147 0.0653 2.5526 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261137542.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:51 Heat of formation + Delta-G solvation = -72.740317 kcal Electronic energy + Delta-G solvation = -14133.636174 eV Core-core repulsion = 11965.413859 eV Total energy + Delta-G solvation = -2168.222315 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.81757 -37.35060 -34.26356 -33.10228 -30.43843 -28.28372 -26.37519 -25.63644 -24.40979 -21.62240 -19.95901 -18.77350 -17.07528 -16.46223 -15.81989 -15.51345 -15.36186 -15.03087 -14.58299 -13.93845 -13.55680 -13.42890 -13.19156 -12.84745 -12.64188 -12.50343 -12.21147 -11.95913 -11.85805 -11.60333 -11.43744 -11.08318 -10.95640 -10.32623 -10.07214 -9.93058 -8.20762 -6.02105 1.54534 1.59495 1.78262 2.63645 3.20061 3.39710 4.15522 4.19130 4.24310 4.29870 4.44908 4.49875 4.55546 4.65232 4.76627 4.81106 4.88674 4.93809 5.04500 5.09647 5.13413 5.23072 5.39257 5.48528 5.55384 5.64766 5.78507 5.91772 6.32666 6.50095 6.57265 6.93344 7.67968 9.04007 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.029306 B = 0.018784 C = 0.014596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.199264 B = 1490.292035 C = 1917.864118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.097 4.097 3 C -0.143 4.143 4 C 0.027 3.973 5 C -0.558 4.558 6 H 0.027 0.973 7 C -0.016 4.016 8 N -0.947 5.947 9 Si 1.090 2.910 10 H -0.280 1.280 11 H -0.282 1.282 12 H -0.290 1.290 13 C -0.120 4.120 14 C -0.138 4.138 15 C 0.068 3.932 16 O -0.403 6.403 17 C 0.083 3.917 18 H 0.045 0.955 19 H 0.035 0.965 20 H 0.051 0.949 21 H 0.048 0.952 22 H 0.048 0.952 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.276 0.724 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.047 0.953 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.027 5.974 4.353 7.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.117 4.117 3 C -0.200 4.200 4 C 0.026 3.974 5 C -0.597 4.597 6 H 0.045 0.955 7 C -0.215 4.215 8 N -0.590 5.590 9 Si 0.916 3.084 10 H -0.206 1.206 11 H -0.208 1.208 12 H -0.216 1.216 13 C -0.158 4.158 14 C -0.176 4.176 15 C -0.009 4.009 16 O -0.322 6.322 17 C 0.007 3.993 18 H 0.064 0.936 19 H 0.054 0.946 20 H 0.069 0.931 21 H 0.066 0.934 22 H 0.067 0.933 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.092 0.908 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.065 0.935 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.919 4.444 3.728 5.873 hybrid contribution 0.148 1.180 0.303 1.227 sum 1.067 5.624 4.031 7.001 Atomic orbital electron populations 1.21571 0.95863 1.00426 0.99838 1.21244 0.95864 0.94955 0.99592 1.21940 1.00490 0.96089 1.01457 1.18909 0.92052 0.94508 0.91910 1.21808 1.28745 0.97143 1.11980 0.95461 1.26395 0.95879 1.06940 0.92311 1.70932 1.37296 1.22715 1.28086 0.83262 0.76364 0.73094 0.75670 1.20631 1.20800 1.21563 1.21787 0.98118 0.98272 0.97627 1.21982 0.99438 1.00114 0.96070 1.22561 0.80972 0.99051 0.98291 1.87779 1.21293 1.80711 1.42406 1.22627 0.97716 0.93575 0.85382 0.93613 0.94591 0.93050 0.93358 0.93274 0.92684 0.92140 0.90778 0.93316 0.93388 0.91293 0.93678 0.92656 0.88272 0.93465 0.90884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.89 8.63 71.98 0.62 -4.27 16 2 C -0.10 -4.19 2.03 -10.80 -0.02 -4.21 16 3 C -0.14 -4.92 8.48 71.98 0.61 -4.31 16 4 C 0.03 1.23 0.06 -52.84 0.00 1.22 16 5 C -0.56 -29.81 5.20 25.60 0.13 -29.68 16 6 H 0.03 1.54 7.76 -2.91 -0.02 1.52 16 7 C -0.02 -0.90 5.10 84.65 0.43 -0.47 16 8 N -0.95 -54.72 12.41 21.45 0.27 -54.45 16 9 Si 1.09 51.07 29.91 68.60 2.05 53.12 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 13 C -0.12 -5.31 4.26 30.76 0.13 -5.18 16 14 C -0.14 -5.62 5.87 30.73 0.18 -5.44 16 15 C 0.07 2.42 6.84 72.01 0.49 2.91 16 16 O -0.40 -17.14 10.45 -148.98 -1.56 -18.70 16 17 C 0.08 3.43 4.78 72.01 0.34 3.78 16 18 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 19 H 0.03 1.66 7.12 -2.39 -0.02 1.65 16 20 H 0.05 1.90 6.58 -2.38 -0.02 1.88 16 21 H 0.05 2.42 5.36 -2.38 -0.01 2.40 16 22 H 0.05 1.66 6.46 -2.39 -0.02 1.64 16 23 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.06 1.89 6.32 -2.39 -0.02 1.88 16 25 H 0.28 15.58 3.32 -92.71 -0.31 15.27 16 26 H 0.05 2.46 5.20 -2.39 -0.01 2.45 16 27 H 0.05 1.89 6.39 -2.38 -0.02 1.88 16 28 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.04 2.12 7.40 -2.39 -0.02 2.10 16 30 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 32 H 0.05 1.72 6.24 -2.39 -0.01 1.71 16 33 H 0.07 3.05 6.65 -2.39 -0.02 3.03 16 Total: -1.00 -59.89 240.85 5.22 -54.66 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 1.54 Total: 11.02 kcal Atomic # 6 Polarization: -48.57 SS G_CDS: 2.92 Total: -45.65 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.27 Total: -54.45 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -1.56 Total: -18.70 kcal Atomic # 14 Polarization: 51.07 SS G_CDS: 2.05 Total: 53.12 kcal Total: -59.89 5.22 -54.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261137542.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.077 kcal (2) G-P(sol) polarization free energy of solvation -59.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds