Wall clock time and date at job start Mon Mar 30 2020 02:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47326 * 2 1 4 4 C 1.50703 * 109.47351 * 239.99845 * 2 1 3 5 5 H 1.07995 * 120.00373 * 240.00183 * 4 2 1 6 6 C 1.37881 * 119.99594 * 59.99888 * 4 2 1 7 7 N 1.31509 * 120.00495 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99704 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46850 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47050 * 119.99977 * 8 6 4 11 11 H 1.48499 * 109.46932 * 240.00257 * 8 6 4 12 12 C 1.53003 * 109.47223 * 119.99988 * 2 1 3 13 13 C 1.53174 * 109.61696 * 180.22153 * 12 2 1 14 14 C 1.53095 * 109.16381 * 176.89131 * 13 12 2 15 15 O 1.42910 * 109.41337 * 302.39093 * 14 13 12 16 16 C 1.42902 * 114.09650 * 61.15575 * 15 14 13 17 17 C 1.53093 * 109.41910 * 298.84413 * 16 15 14 18 18 H 1.08994 * 109.47405 * 300.00256 * 1 2 3 19 19 H 1.09008 * 109.47034 * 60.00193 * 1 2 3 20 20 H 1.09000 * 109.47189 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47309 * 179.97438 * 3 2 1 22 22 H 1.09000 * 109.47057 * 299.99609 * 3 2 1 23 23 H 1.08994 * 109.47088 * 59.99550 * 3 2 1 24 24 H 0.96994 * 120.00340 * 180.02562 * 7 6 4 25 25 H 1.09002 * 109.54370 * 59.99804 * 12 2 1 26 26 H 1.09004 * 109.52433 * 296.79634 * 13 12 2 27 27 H 1.08999 * 109.52728 * 56.98569 * 13 12 2 28 28 H 1.08998 * 109.48473 * 182.41141 * 14 13 12 29 29 H 1.08997 * 109.48189 * 62.37446 * 14 13 12 30 30 H 1.08997 * 109.48292 * 178.85819 * 16 15 14 31 31 H 1.09005 * 109.48948 * 58.82779 * 16 15 14 32 32 H 1.09003 * 109.51855 * 297.70418 * 17 16 15 33 33 H 1.08993 * 109.52292 * 177.51569 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6035 8 14 2.3214 -1.1204 -4.0080 9 1 3.1465 -2.2871 -3.6037 10 1 1.1661 -1.5868 -4.8161 11 1 3.1466 -0.1874 -4.8165 12 6 2.0400 -0.7213 1.2493 13 6 3.5717 -0.7184 1.2554 14 6 4.0703 -1.3732 2.5463 15 8 3.5384 -0.6707 3.6714 16 6 2.1112 -0.6804 3.7438 17 6 1.5339 0.0022 2.5010 18 1 -0.3634 0.5138 0.8899 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 -1.0277 0.0005 21 1 3.1300 1.4425 0.0005 22 1 1.6768 1.9563 -0.8900 23 1 1.6767 1.9564 0.8899 24 1 0.7089 1.1613 -3.4844 25 1 1.6773 -1.7492 1.2505 26 1 3.9405 -1.2792 0.3965 27 1 3.9343 0.3083 1.2042 28 1 5.1593 -1.3355 2.5760 29 1 3.7414 -2.4118 2.5776 30 1 1.7888 -0.1438 4.6361 31 1 1.7565 -1.7100 3.7908 32 1 1.8553 1.0434 2.4749 33 1 0.4454 -0.0433 2.5330 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261138714.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:22 Heat of formation + Delta-G solvation = -66.743442 kcal Electronic energy + Delta-G solvation = -13678.578797 eV Core-core repulsion = 11510.616526 eV Total energy + Delta-G solvation = -2167.962271 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.05645 -36.03232 -32.36787 -30.60553 -29.71617 -25.71449 -25.28473 -24.03132 -22.67017 -20.20823 -18.00663 -15.94632 -15.58875 -15.47051 -14.59036 -14.23017 -13.59021 -13.17013 -12.67595 -12.56783 -11.83191 -11.65134 -11.33799 -10.95857 -10.81301 -10.62200 -10.38087 -10.25748 -9.98951 -9.95542 -9.82633 -9.41659 -9.16485 -8.56609 -8.47859 -8.26659 -5.90875 -4.00417 3.29637 3.38356 3.41343 4.32745 4.44987 5.33819 5.42782 5.53624 5.62452 5.72867 5.78556 5.91662 6.10503 6.18583 6.49242 6.51606 6.68625 6.79693 6.86195 7.00949 7.04016 7.10364 7.20320 7.33807 7.49166 7.64910 7.73017 7.80849 8.18333 8.30305 8.55589 9.00547 9.64413 11.09729 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.049379 B = 0.011525 C = 0.010238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.909991 B = 2428.851036 C = 2734.266260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.072 3.928 3 C -0.132 4.132 4 C -0.499 4.499 5 H 0.054 0.946 6 C 0.063 3.937 7 N -0.887 5.887 8 Si 0.885 3.115 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.286 1.286 12 C -0.071 4.071 13 C -0.142 4.142 14 C 0.058 3.942 15 O -0.393 6.393 16 C 0.062 3.938 17 C -0.154 4.154 18 H 0.009 0.991 19 H 0.081 0.919 20 H 0.021 0.979 21 H 0.026 0.974 22 H 0.079 0.921 23 H 0.009 0.991 24 H 0.257 0.743 25 H 0.051 0.949 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.041 0.959 30 H 0.081 0.919 31 H 0.041 0.959 32 H 0.070 0.930 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.962 -2.203 7.500 8.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.072 3.928 3 C -0.190 4.190 4 C -0.537 4.537 5 H 0.073 0.927 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.714 3.286 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.212 1.212 12 C -0.089 4.089 13 C -0.179 4.179 14 C -0.018 4.018 15 O -0.312 6.312 16 C -0.015 4.015 17 C -0.192 4.192 18 H 0.028 0.972 19 H 0.100 0.900 20 H 0.040 0.960 21 H 0.045 0.955 22 H 0.098 0.902 23 H 0.028 0.972 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.059 0.941 30 H 0.100 0.900 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.999 -2.003 7.487 8.004 hybrid contribution 0.098 -0.625 -1.170 1.330 sum 2.097 -2.628 6.317 7.156 Atomic orbital electron populations 1.21856 0.98390 0.98612 1.00098 1.18052 0.91998 0.92209 0.90569 1.21904 0.98358 0.98800 0.99921 1.21195 1.30639 1.11604 0.90301 0.92738 1.24918 0.95150 0.94994 0.98717 1.69829 1.37121 1.22935 1.22741 0.86645 0.78602 0.79754 0.83609 1.19951 1.21219 1.21202 1.21195 0.93825 0.98669 0.95232 1.22205 0.97449 1.01828 0.96429 1.22675 0.97925 0.94544 0.86668 1.87824 1.20617 1.76269 1.46462 1.22578 0.81117 0.99333 0.98474 1.22381 1.00570 1.00983 0.95225 0.97178 0.90025 0.95972 0.95471 0.90216 0.97211 0.93300 0.93031 0.90481 0.91304 0.89962 0.94085 0.90040 0.94052 0.91136 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 7.90 37.16 0.29 -2.84 16 2 C 0.07 1.71 0.30 -155.66 -0.05 1.66 16 3 C -0.13 -3.15 7.55 37.16 0.28 -2.87 16 4 C -0.50 -13.14 7.33 -34.44 -0.25 -13.39 16 5 H 0.05 1.43 6.74 -52.49 -0.35 1.08 16 6 C 0.06 1.68 5.15 -17.82 -0.09 1.59 16 7 N -0.89 -24.45 9.35 55.43 0.52 -23.93 16 8 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 C -0.07 -1.44 1.59 -90.44 -0.14 -1.59 16 13 C -0.14 -2.71 4.83 -26.59 -0.13 -2.84 16 14 C 0.06 0.96 6.84 37.21 0.25 1.22 16 15 O -0.39 -6.85 10.77 -35.23 -0.38 -7.23 16 16 C 0.06 0.98 6.84 37.21 0.25 1.23 16 17 C -0.15 -2.77 4.70 -26.59 -0.12 -2.90 16 18 H 0.01 0.20 6.51 -51.93 -0.34 -0.14 16 19 H 0.08 2.14 6.07 -51.92 -0.32 1.83 16 20 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 21 H 0.03 0.63 6.37 -51.93 -0.33 0.30 16 22 H 0.08 2.10 6.07 -51.93 -0.32 1.79 16 23 H 0.01 0.20 6.37 -51.93 -0.33 -0.13 16 24 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 25 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.08 1.54 6.76 -51.93 -0.35 1.19 16 27 H 0.07 1.38 6.29 -51.93 -0.33 1.05 16 28 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.33 6.29 -51.93 -0.33 1.00 16 33 H 0.07 1.18 6.62 -51.93 -0.34 0.84 16 LS Contribution 245.26 15.07 3.70 3.70 Total: -1.00 -27.29 245.26 -5.89 -33.18 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -5.00 Total: -0.96 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: 0.29 Total: -20.74 kcal Atomic # 7 Polarization: -24.45 SS G_CDS: 0.52 Total: -23.93 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -0.38 Total: -7.23 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -27.29 -5.89 -33.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261138714.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.559 kcal (2) G-P(sol) polarization free energy of solvation -27.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds