Wall clock time and date at job start Mon Mar 30 2020 02:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47326 * 2 1 4 4 C 1.50703 * 109.47351 * 239.99845 * 2 1 3 5 5 H 1.07995 * 120.00373 * 240.00183 * 4 2 1 6 6 C 1.37881 * 119.99594 * 59.99888 * 4 2 1 7 7 N 1.31509 * 120.00495 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99704 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46850 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47050 * 119.99977 * 8 6 4 11 11 H 1.48499 * 109.46932 * 240.00257 * 8 6 4 12 12 C 1.53003 * 109.47223 * 119.99988 * 2 1 3 13 13 C 1.53174 * 109.61696 * 180.22153 * 12 2 1 14 14 C 1.53095 * 109.16381 * 176.89131 * 13 12 2 15 15 O 1.42910 * 109.41337 * 302.39093 * 14 13 12 16 16 C 1.42902 * 114.09650 * 61.15575 * 15 14 13 17 17 C 1.53093 * 109.41910 * 298.84413 * 16 15 14 18 18 H 1.08994 * 109.47405 * 300.00256 * 1 2 3 19 19 H 1.09008 * 109.47034 * 60.00193 * 1 2 3 20 20 H 1.09000 * 109.47189 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47309 * 179.97438 * 3 2 1 22 22 H 1.09000 * 109.47057 * 299.99609 * 3 2 1 23 23 H 1.08994 * 109.47088 * 59.99550 * 3 2 1 24 24 H 0.96994 * 120.00340 * 180.02562 * 7 6 4 25 25 H 1.09002 * 109.54370 * 59.99804 * 12 2 1 26 26 H 1.09004 * 109.52433 * 296.79634 * 13 12 2 27 27 H 1.08999 * 109.52728 * 56.98569 * 13 12 2 28 28 H 1.08998 * 109.48473 * 182.41141 * 14 13 12 29 29 H 1.08997 * 109.48189 * 62.37446 * 14 13 12 30 30 H 1.08997 * 109.48292 * 178.85819 * 16 15 14 31 31 H 1.09005 * 109.48948 * 58.82779 * 16 15 14 32 32 H 1.09003 * 109.51855 * 297.70418 * 17 16 15 33 33 H 1.08993 * 109.52292 * 177.51569 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6035 8 14 2.3214 -1.1204 -4.0080 9 1 3.1465 -2.2871 -3.6037 10 1 1.1661 -1.5868 -4.8161 11 1 3.1466 -0.1874 -4.8165 12 6 2.0400 -0.7213 1.2493 13 6 3.5717 -0.7184 1.2554 14 6 4.0703 -1.3732 2.5463 15 8 3.5384 -0.6707 3.6714 16 6 2.1112 -0.6804 3.7438 17 6 1.5339 0.0022 2.5010 18 1 -0.3634 0.5138 0.8899 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 -1.0277 0.0005 21 1 3.1300 1.4425 0.0005 22 1 1.6768 1.9563 -0.8900 23 1 1.6767 1.9564 0.8899 24 1 0.7089 1.1613 -3.4844 25 1 1.6773 -1.7492 1.2505 26 1 3.9405 -1.2792 0.3965 27 1 3.9343 0.3083 1.2042 28 1 5.1593 -1.3355 2.5760 29 1 3.7414 -2.4118 2.5776 30 1 1.7888 -0.1438 4.6361 31 1 1.7565 -1.7100 3.7908 32 1 1.8553 1.0434 2.4749 33 1 0.4454 -0.0433 2.5330 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261138714.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:22 Heat of formation + Delta-G solvation = -82.219336 kcal Electronic energy + Delta-G solvation = -13679.249882 eV Core-core repulsion = 11510.616526 eV Total energy + Delta-G solvation = -2168.633356 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.52777 -37.70004 -34.22627 -31.99797 -31.45056 -27.62219 -27.26970 -25.55830 -24.11222 -21.80321 -19.74524 -17.83625 -17.17599 -16.80921 -16.39622 -15.63146 -15.24471 -14.77449 -14.36199 -14.29393 -13.59026 -13.27730 -13.06946 -12.85224 -12.50287 -12.31854 -12.17978 -12.02413 -11.89093 -11.53059 -11.51231 -11.05539 -10.81596 -10.37291 -10.28302 -10.12020 -7.94552 -6.09771 1.39780 1.43865 1.52294 2.47143 3.07892 3.27450 4.07869 4.09675 4.24859 4.28448 4.46248 4.63585 4.73938 4.82370 4.88711 4.93187 4.95569 5.08390 5.22637 5.23932 5.32584 5.42854 5.47089 5.55926 5.64550 5.75233 5.75665 6.26274 6.33907 6.37509 6.54507 6.98795 7.57223 9.03682 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.049379 B = 0.011525 C = 0.010238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.909991 B = 2428.851036 C = 2734.266260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.062 3.938 3 C -0.121 4.121 4 C -0.510 4.510 5 H 0.049 0.951 6 C 0.018 3.982 7 N -0.908 5.908 8 Si 0.939 3.061 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.286 1.286 12 C -0.069 4.069 13 C -0.138 4.138 14 C 0.063 3.937 15 O -0.402 6.402 16 C 0.062 3.938 17 C -0.149 4.149 18 H 0.030 0.970 19 H 0.053 0.947 20 H 0.018 0.982 21 H 0.023 0.977 22 H 0.050 0.950 23 H 0.026 0.974 24 H 0.255 0.745 25 H 0.046 0.954 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.103 0.897 29 H 0.053 0.947 30 H 0.108 0.892 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.382 -2.932 8.757 9.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.062 3.938 3 C -0.179 4.179 4 C -0.549 4.549 5 H 0.067 0.933 6 C -0.180 4.180 7 N -0.548 5.548 8 Si 0.767 3.233 9 H -0.195 1.195 10 H -0.212 1.212 11 H -0.212 1.212 12 C -0.088 4.088 13 C -0.176 4.176 14 C -0.013 4.013 15 O -0.322 6.322 16 C -0.014 4.014 17 C -0.187 4.187 18 H 0.049 0.951 19 H 0.071 0.929 20 H 0.038 0.962 21 H 0.042 0.958 22 H 0.069 0.931 23 H 0.044 0.956 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.121 0.879 29 H 0.071 0.929 30 H 0.126 0.874 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.423 -2.739 8.751 9.484 hybrid contribution -0.052 -0.385 -1.561 1.609 sum 2.371 -3.123 7.190 8.189 Atomic orbital electron populations 1.21730 0.98526 0.98234 0.99699 1.18130 0.91956 0.92214 0.91486 1.21751 0.97995 0.98899 0.99247 1.21502 1.30309 1.11499 0.91553 0.93271 1.25552 0.95596 0.95721 1.01165 1.69966 1.37945 1.23885 1.22986 0.85795 0.78005 0.78841 0.80685 1.19455 1.21205 1.21235 1.21093 0.94720 0.98100 0.94855 1.22126 0.96560 1.01158 0.97736 1.22682 0.99146 0.94645 0.84832 1.87825 1.21475 1.76472 1.46393 1.22693 0.80282 1.00248 0.98170 1.22314 1.00968 1.00262 0.95125 0.95066 0.92850 0.96237 0.95809 0.93075 0.95553 0.93547 0.93570 0.91900 0.92606 0.87885 0.92858 0.87412 0.92748 0.92098 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.86 7.90 71.98 0.57 -5.29 16 2 C 0.06 2.94 0.30 -52.93 -0.02 2.93 16 3 C -0.12 -5.78 7.55 71.98 0.54 -5.24 16 4 C -0.51 -26.92 7.33 25.60 0.19 -26.73 16 5 H 0.05 2.59 6.74 -2.91 -0.02 2.57 16 6 C 0.02 0.96 5.15 84.66 0.44 1.40 16 7 N -0.91 -50.75 9.35 21.45 0.20 -50.55 16 8 Si 0.94 43.27 29.54 68.60 2.03 45.29 16 9 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 10 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 11 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 12 C -0.07 -2.73 1.59 -10.67 -0.02 -2.75 16 13 C -0.14 -5.12 4.83 30.68 0.15 -4.97 16 14 C 0.06 1.91 6.84 72.01 0.49 2.41 16 15 O -0.40 -12.76 10.77 -148.98 -1.60 -14.37 16 16 C 0.06 1.76 6.84 72.01 0.49 2.25 16 17 C -0.15 -5.01 4.70 30.69 0.14 -4.87 16 18 H 0.03 1.29 6.51 -2.39 -0.02 1.27 16 19 H 0.05 2.82 6.07 -2.38 -0.01 2.81 16 20 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 21 H 0.02 1.10 6.37 -2.39 -0.02 1.08 16 22 H 0.05 2.72 6.07 -2.39 -0.01 2.71 16 23 H 0.03 1.12 6.37 -2.39 -0.02 1.10 16 24 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 25 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.06 2.48 6.76 -2.39 -0.02 2.46 16 27 H 0.06 2.19 6.29 -2.39 -0.02 2.17 16 28 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.06 2.16 6.29 -2.39 -0.01 2.14 16 33 H 0.07 2.36 6.62 -2.39 -0.02 2.35 16 Total: -1.00 -56.98 245.26 4.68 -52.30 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 1.08 Total: 8.18 kcal Atomic # 6 Polarization: -43.85 SS G_CDS: 2.98 Total: -40.87 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: 0.20 Total: -50.55 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -1.60 Total: -14.37 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Total: -56.98 4.68 -52.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261138714.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.917 kcal (2) G-P(sol) polarization free energy of solvation -56.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds