Wall clock time and date at job start Mon Mar 30 2020 02:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42897 * 109.47249 * 2 1 4 4 C 1.42904 * 114.00334 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47197 * 150.00167 * 4 3 2 6 6 C 1.53000 * 109.47137 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47355 * 300.00155 * 6 5 4 8 8 C 1.50694 * 109.47168 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00563 * 359.97438 * 8 7 6 10 10 C 1.37885 * 119.99902 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99792 * 179.72330 * 10 8 7 12 12 Si 1.86795 * 120.00009 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.47088 * 89.99795 * 12 10 8 14 14 H 1.48495 * 109.47293 * 209.99997 * 12 10 8 15 15 H 1.48507 * 109.47015 * 329.99955 * 12 10 8 16 16 C 1.53000 * 109.47124 * 59.99497 * 7 6 5 17 17 C 1.53000 * 109.47415 * 300.00466 * 16 7 6 18 18 H 1.09002 * 109.46877 * 180.02562 * 1 2 3 19 19 H 1.08999 * 109.47093 * 299.99994 * 1 2 3 20 20 H 1.08996 * 109.46777 * 60.00031 * 1 2 3 21 21 H 1.09005 * 109.47455 * 240.00171 * 2 1 3 22 22 H 1.09004 * 109.47399 * 119.99817 * 2 1 3 23 23 H 1.09002 * 109.46808 * 29.99993 * 4 3 2 24 24 H 1.09002 * 109.47384 * 60.00178 * 5 4 3 25 25 H 1.08995 * 109.47132 * 300.00123 * 5 4 3 26 26 H 1.09000 * 109.46966 * 179.97438 * 6 5 4 27 27 H 1.09002 * 109.46807 * 59.99864 * 6 5 4 28 28 H 1.09002 * 109.46926 * 299.99636 * 7 6 5 29 29 H 0.97000 * 119.99468 * 179.97438 * 11 10 8 30 30 H 1.09007 * 109.46721 * 60.00490 * 16 7 6 31 31 H 1.08995 * 109.47131 * 180.02562 * 16 7 6 32 32 H 1.09002 * 109.46807 * 299.99967 * 17 16 7 33 33 H 1.09000 * 109.46966 * 179.97438 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8410 2.7456 -0.7206 6 6 5.3662 2.8668 -0.7194 7 6 5.8735 2.9075 0.7235 8 6 7.3757 3.0262 0.7246 9 1 7.9149 3.0680 -0.2103 10 6 8.0620 3.0815 1.9192 11 7 9.3735 3.1796 1.9202 12 14 7.1297 3.0085 3.5362 13 1 6.9934 1.5934 3.9656 14 1 7.8734 3.7704 4.5713 15 1 5.7808 3.6035 3.3572 16 6 5.4633 1.6220 1.4447 17 6 3.9382 1.5008 1.4435 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 1.8934 -0.5138 -0.8900 22 1 1.8934 -0.5138 0.8900 23 1 3.8636 0.6015 -0.5130 24 1 3.4083 3.6042 -0.2071 25 1 3.4792 2.7168 -1.7484 26 1 5.6583 3.7824 -1.2336 27 1 5.7992 2.0082 -1.2327 28 1 5.4404 3.7661 1.2367 29 1 9.8562 3.2188 2.7606 30 1 5.8965 0.7634 0.9314 31 1 5.8243 1.6512 2.4727 32 1 3.5051 2.3594 1.9568 33 1 3.6461 0.5848 1.9570 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261140805.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:42 Heat of formation + Delta-G solvation = -91.450425 kcal Electronic energy + Delta-G solvation = -13145.188186 eV Core-core repulsion = 10976.154541 eV Total energy + Delta-G solvation = -2169.033646 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.19137 -37.79897 -34.64288 -32.47215 -31.69518 -30.62480 -26.29557 -23.92629 -23.39423 -22.41689 -20.61073 -18.78056 -17.82771 -16.89040 -16.47325 -15.90336 -15.00847 -14.98449 -14.58975 -14.43049 -13.96978 -13.63347 -13.34623 -13.01506 -12.69573 -12.63541 -12.26330 -12.10210 -11.93290 -11.77759 -11.65901 -11.19969 -11.00750 -10.88062 -10.71724 -10.20317 -8.30028 -6.32844 1.28454 1.34845 1.45490 2.32015 2.74860 3.05545 3.83332 3.89213 4.19318 4.22120 4.35200 4.42035 4.45654 4.52632 4.61044 4.66246 4.70446 4.77159 4.89879 5.02805 5.07131 5.14426 5.15928 5.30131 5.31693 5.38991 5.57561 5.69962 5.78758 6.32691 6.37765 6.75009 7.32752 8.86968 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.058010 B = 0.009275 C = 0.008409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.558427 B = 3018.112553 C = 3329.035381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.045 3.955 3 O -0.400 6.400 4 C 0.099 3.901 5 C -0.107 4.107 6 C -0.092 4.092 7 C 0.009 3.991 8 C -0.517 4.517 9 H 0.035 0.965 10 C 0.011 3.989 11 N -0.951 5.951 12 Si 0.948 3.052 13 H -0.267 1.267 14 H -0.299 1.299 15 H -0.249 1.249 16 C -0.115 4.115 17 C -0.134 4.134 18 H 0.090 0.910 19 H 0.057 0.943 20 H 0.061 0.939 21 H 0.055 0.945 22 H 0.049 0.951 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.078 0.922 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.020 0.980 29 H 0.265 0.735 30 H 0.058 0.942 31 H 0.035 0.965 32 H 0.058 0.942 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.705 -6.448 -2.285 18.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.031 4.031 3 O -0.320 6.320 4 C 0.042 3.958 5 C -0.144 4.144 6 C -0.129 4.129 7 C -0.010 4.010 8 C -0.555 4.555 9 H 0.053 0.947 10 C -0.186 4.186 11 N -0.592 5.592 12 Si 0.775 3.225 13 H -0.193 1.193 14 H -0.227 1.227 15 H -0.173 1.173 16 C -0.153 4.153 17 C -0.172 4.172 18 H 0.109 0.891 19 H 0.076 0.924 20 H 0.080 0.920 21 H 0.074 0.926 22 H 0.067 0.933 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.097 0.903 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.039 0.961 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.690 -6.285 -2.195 17.969 hybrid contribution 0.679 -0.097 0.872 1.109 sum -16.011 -6.382 -1.323 17.287 Atomic orbital electron populations 1.21746 0.92510 1.03338 1.02710 1.22728 0.96584 0.83283 1.00555 1.87873 1.21203 1.27800 1.95164 1.22014 0.80296 0.98649 0.94888 1.21559 0.95327 0.96845 1.00714 1.21316 0.93756 1.01161 0.96698 1.19173 0.93479 0.93726 0.94629 1.21443 0.92077 1.49080 0.92917 0.94682 1.25880 0.95380 0.94411 1.02930 1.70055 1.08423 1.52865 1.27885 0.85845 0.79377 0.78345 0.78908 1.19291 1.22738 1.17293 1.21812 0.94483 0.99904 0.99098 1.22022 0.95357 1.02004 0.97837 0.89120 0.92427 0.92032 0.92648 0.93262 0.91550 0.91942 0.90324 0.92534 0.92737 0.96144 0.92637 0.92324 0.94725 0.92274 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 10.28 71.98 0.74 -1.76 16 2 C 0.04 0.98 6.47 71.98 0.47 1.44 16 3 O -0.40 -11.55 9.99 -148.98 -1.49 -13.04 16 4 C 0.10 3.05 2.61 30.59 0.08 3.13 16 5 C -0.11 -3.43 5.57 30.59 0.17 -3.25 16 6 C -0.09 -3.56 5.14 30.59 0.16 -3.40 16 7 C 0.01 0.41 1.69 -11.54 -0.02 0.39 16 8 C -0.52 -29.76 9.14 25.60 0.23 -29.52 16 9 H 0.03 2.21 7.99 -2.91 -0.02 2.19 16 10 C 0.01 0.62 5.45 84.66 0.46 1.09 16 11 N -0.95 -60.33 13.96 21.45 0.30 -60.03 16 12 Si 0.95 45.94 24.37 68.60 1.67 47.61 16 13 H -0.27 -12.28 6.87 99.48 0.68 -11.59 16 14 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 15 H -0.25 -11.32 6.53 99.48 0.65 -10.67 16 16 C -0.12 -4.81 4.68 30.59 0.14 -4.67 16 17 C -0.13 -4.56 5.54 30.60 0.17 -4.39 16 18 H 0.09 1.11 8.14 -2.39 -0.02 1.10 16 19 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 20 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 21 H 0.06 1.10 8.09 -2.38 -0.02 1.08 16 22 H 0.05 1.04 7.87 -2.39 -0.02 1.02 16 23 H 0.07 1.92 7.79 -2.39 -0.02 1.91 16 24 H 0.06 2.03 8.14 -2.39 -0.02 2.02 16 25 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 29 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 30 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 31 H 0.03 1.53 3.27 -2.39 -0.01 1.52 16 32 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.07 2.08 7.87 -2.39 -0.02 2.06 16 Total: -1.00 -64.77 257.06 4.06 -60.71 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: 0.97 Total: 5.71 kcal Atomic # 6 Polarization: -43.56 SS G_CDS: 2.60 Total: -40.96 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: 0.30 Total: -60.03 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -1.49 Total: -13.04 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 1.67 Total: 47.61 kcal Total: -64.77 4.06 -60.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261140805.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.737 kcal (2) G-P(sol) polarization free energy of solvation -64.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds