Wall clock time and date at job start Mon Mar 30 2020 02:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 113.99870 * 2 1 4 4 H 1.09008 * 109.47387 * 18.77402 * 3 2 1 5 5 C 1.50701 * 109.47542 * 138.77487 * 3 2 1 6 6 H 1.07998 * 120.00269 * 119.99423 * 5 3 2 7 7 C 1.37878 * 119.99587 * 300.00296 * 5 3 2 8 8 N 1.31512 * 120.00584 * 359.97438 * 7 5 3 9 9 Si 1.86810 * 119.99623 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47029 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.46734 * 299.99655 * 9 7 5 12 12 H 1.48497 * 109.47115 * 59.99740 * 9 7 5 13 13 C 1.53002 * 109.47308 * 258.77854 * 3 2 1 14 14 C 1.52992 * 109.47436 * 174.69865 * 13 3 2 15 15 C 1.52996 * 109.47256 * 179.97438 * 14 13 3 16 16 C 1.53001 * 109.47101 * 60.00003 * 15 14 13 17 17 C 1.52998 * 109.47145 * 300.00416 * 16 15 14 18 18 C 1.52995 * 109.46892 * 54.69560 * 13 3 2 19 19 H 1.08999 * 109.47515 * 65.48390 * 1 2 3 20 20 H 1.08997 * 109.47157 * 185.48531 * 1 2 3 21 21 H 1.09001 * 109.47695 * 305.48193 * 1 2 3 22 22 H 0.97001 * 119.99682 * 359.97438 * 8 7 5 23 23 H 1.09009 * 109.46551 * 294.69787 * 13 3 2 24 24 H 1.08999 * 109.46991 * 300.00075 * 14 13 3 25 25 H 1.09004 * 109.47436 * 59.99717 * 14 13 3 26 26 H 1.08999 * 109.47558 * 300.00188 * 15 14 13 27 27 H 1.08998 * 109.47160 * 179.97438 * 15 14 13 28 28 H 1.08995 * 109.47569 * 179.97438 * 16 15 14 29 29 H 1.09000 * 109.47251 * 59.99897 * 16 15 14 30 30 H 1.09000 * 109.46622 * 299.99866 * 17 16 15 31 31 H 1.09000 * 109.47252 * 180.02562 * 17 16 15 32 32 H 1.08998 * 109.47154 * 300.00146 * 18 13 3 33 33 H 1.08995 * 109.47346 * 60.00912 * 18 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2690 2.0332 0.3308 5 6 3.1907 1.3299 0.9363 6 1 4.1736 1.5719 0.5599 7 6 3.0160 1.0430 2.2736 8 7 1.8191 0.7486 2.7321 9 14 4.4796 1.0725 3.4341 10 1 4.0292 0.7319 4.8076 11 1 5.4887 0.0808 2.9833 12 1 5.0840 2.4289 3.4341 13 6 2.4740 1.6573 -1.4149 14 6 2.9749 3.1026 -1.4429 15 6 3.4393 3.4541 -2.8576 16 6 2.2692 3.3009 -3.8314 17 6 1.7683 1.8555 -3.8034 18 6 1.3035 1.5041 -2.3882 19 1 -0.3634 0.4264 -0.9350 20 1 -0.3633 -1.0229 0.0982 21 1 -0.3634 0.5965 0.8368 22 1 1.0591 0.7337 2.1296 23 1 3.2817 0.9871 -1.7096 24 1 2.1673 3.7727 -1.1482 25 1 3.8088 3.2117 -0.7495 26 1 4.2470 2.7840 -3.1520 27 1 3.7957 4.4840 -2.8777 28 1 2.5999 3.5518 -4.8392 29 1 1.4615 3.9711 -3.5371 30 1 2.5760 1.1854 -4.0976 31 1 0.9350 1.7463 -4.4974 32 1 0.9468 0.4744 -2.3682 33 1 0.4960 2.1743 -2.0936 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261158493.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:14 Heat of formation + Delta-G solvation = -84.041699 kcal Electronic energy + Delta-G solvation = -13512.781931 eV Core-core repulsion = 11344.069552 eV Total energy + Delta-G solvation = -2168.712379 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.49705 -36.13729 -32.55453 -30.87361 -30.19446 -26.80948 -24.72328 -22.87112 -21.98116 -20.39515 -19.11391 -16.97388 -15.40174 -15.04667 -14.04141 -13.78385 -13.65484 -13.53979 -13.40893 -12.95715 -12.06213 -11.83256 -11.42000 -11.29000 -10.82253 -10.76698 -10.62359 -10.51379 -10.13867 -10.07145 -9.77457 -9.70632 -9.43596 -8.85962 -8.33691 -7.85738 -6.32528 -4.09315 3.45247 3.48381 3.66196 4.54828 5.03659 5.15857 5.24704 5.27101 5.67213 5.73973 5.85444 5.98337 6.00068 6.01949 6.11100 6.14370 6.21431 6.35563 6.39189 6.48694 6.52380 6.58345 6.63901 6.78844 6.84630 6.99572 7.13238 7.32553 8.17610 8.44450 8.78373 8.92728 9.71105 11.06710 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.039689 B = 0.011961 C = 0.009655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.319514 B = 2340.351462 C = 2899.331308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.205 3.795 4 H 0.006 0.994 5 C -0.598 4.598 6 H 0.056 0.944 7 C 0.029 3.971 8 N -0.898 5.898 9 Si 1.067 2.933 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.288 1.288 13 C -0.090 4.090 14 C -0.103 4.103 15 C -0.119 4.119 16 C -0.117 4.117 17 C -0.117 4.117 18 C -0.116 4.116 19 H 0.022 0.978 20 H 0.060 0.940 21 H 0.030 0.970 22 H 0.276 0.724 23 H 0.062 0.938 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.319 3.572 -9.330 9.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.307 6.307 3 C 0.150 3.850 4 H 0.024 0.976 5 C -0.636 4.636 6 H 0.074 0.926 7 C -0.178 4.178 8 N -0.534 5.534 9 Si 0.895 3.105 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.214 1.214 13 C -0.109 4.109 14 C -0.140 4.140 15 C -0.157 4.157 16 C -0.154 4.154 17 C -0.154 4.154 18 C -0.154 4.154 19 H 0.040 0.960 20 H 0.078 0.922 21 H 0.049 0.951 22 H 0.088 0.912 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.230 3.186 -7.762 8.393 hybrid contribution -0.714 0.387 -1.667 1.854 sum -0.484 3.573 -9.428 10.094 Atomic orbital electron populations 1.22608 0.85594 1.00331 0.98147 1.88156 1.15816 1.32281 1.94441 1.19958 0.93215 0.81134 0.90737 0.97640 1.22074 0.94770 1.52392 0.94325 0.92583 1.25846 1.01921 0.92669 0.97350 1.70718 1.00098 1.42797 1.39797 0.83588 0.74421 0.76462 0.75985 1.20787 1.21340 1.21403 1.21491 0.96788 0.95860 0.96714 1.21436 1.01099 0.96391 0.95111 1.21571 0.97541 1.00309 0.96230 1.21520 0.98390 0.97009 0.98500 1.21539 1.00019 0.96432 0.97449 1.21694 0.98560 1.00877 0.94246 0.95969 0.92160 0.95110 0.91219 0.91922 0.93097 0.90998 0.92454 0.92850 0.92992 0.92500 0.92395 0.93049 0.91922 0.93198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 9.80 101.05 0.99 1.65 16 2 O -0.39 -10.16 8.92 -35.23 -0.31 -10.48 16 3 C 0.20 5.29 1.37 -27.88 -0.04 5.25 16 4 H 0.01 0.16 7.47 -51.92 -0.39 -0.23 16 5 C -0.60 -17.06 8.09 -34.44 -0.28 -17.33 16 6 H 0.06 1.57 7.08 -52.49 -0.37 1.19 16 7 C 0.03 0.85 5.40 -17.82 -0.10 0.76 16 8 N -0.90 -27.59 13.53 55.43 0.75 -26.84 16 9 Si 1.07 25.45 29.90 -169.99 -5.08 20.37 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 13 C -0.09 -1.92 1.91 -90.62 -0.17 -2.09 16 14 C -0.10 -1.97 5.02 -26.74 -0.13 -2.11 16 15 C -0.12 -1.85 5.92 -26.73 -0.16 -2.01 16 16 C -0.12 -1.65 5.92 -26.73 -0.16 -1.81 16 17 C -0.12 -1.77 5.92 -26.71 -0.16 -1.93 16 18 C -0.12 -2.13 3.93 -26.71 -0.10 -2.23 16 19 H 0.02 0.42 5.99 -51.93 -0.31 0.11 16 20 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 21 H 0.03 0.69 6.76 -51.93 -0.35 0.34 16 22 H 0.28 8.34 4.79 -40.82 -0.20 8.14 16 23 H 0.06 1.42 8.14 -51.92 -0.42 1.00 16 24 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.07 1.49 6.97 -51.93 -0.36 1.12 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 1.19 6.41 -51.93 -0.33 0.85 16 33 H 0.05 0.90 8.03 -51.93 -0.42 0.48 16 LS Contribution 253.73 15.07 3.82 3.82 Total: -1.00 -30.72 253.73 -6.46 -37.19 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -5.33 Total: -2.21 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: -0.31 Total: -21.85 kcal Atomic # 7 Polarization: -27.59 SS G_CDS: 0.75 Total: -26.84 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -0.31 Total: -10.48 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -5.08 Total: 20.37 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.72 -6.46 -37.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261158493.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.855 kcal (2) G-P(sol) polarization free energy of solvation -30.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds