Wall clock time and date at job start Mon Mar 30 2020 02:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 113.99870 * 2 1 4 4 H 1.09008 * 109.47387 * 18.77402 * 3 2 1 5 5 C 1.50701 * 109.47542 * 138.77487 * 3 2 1 6 6 H 1.07998 * 120.00269 * 119.99423 * 5 3 2 7 7 C 1.37878 * 119.99587 * 300.00296 * 5 3 2 8 8 N 1.31512 * 120.00584 * 359.97438 * 7 5 3 9 9 Si 1.86810 * 119.99623 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47029 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.46734 * 299.99655 * 9 7 5 12 12 H 1.48497 * 109.47115 * 59.99740 * 9 7 5 13 13 C 1.53002 * 109.47308 * 258.77854 * 3 2 1 14 14 C 1.52992 * 109.47436 * 174.69865 * 13 3 2 15 15 C 1.52996 * 109.47256 * 179.97438 * 14 13 3 16 16 C 1.53001 * 109.47101 * 60.00003 * 15 14 13 17 17 C 1.52998 * 109.47145 * 300.00416 * 16 15 14 18 18 C 1.52995 * 109.46892 * 54.69560 * 13 3 2 19 19 H 1.08999 * 109.47515 * 65.48390 * 1 2 3 20 20 H 1.08997 * 109.47157 * 185.48531 * 1 2 3 21 21 H 1.09001 * 109.47695 * 305.48193 * 1 2 3 22 22 H 0.97001 * 119.99682 * 359.97438 * 8 7 5 23 23 H 1.09009 * 109.46551 * 294.69787 * 13 3 2 24 24 H 1.08999 * 109.46991 * 300.00075 * 14 13 3 25 25 H 1.09004 * 109.47436 * 59.99717 * 14 13 3 26 26 H 1.08999 * 109.47558 * 300.00188 * 15 14 13 27 27 H 1.08998 * 109.47160 * 179.97438 * 15 14 13 28 28 H 1.08995 * 109.47569 * 179.97438 * 16 15 14 29 29 H 1.09000 * 109.47251 * 59.99897 * 16 15 14 30 30 H 1.09000 * 109.46622 * 299.99866 * 17 16 15 31 31 H 1.09000 * 109.47252 * 180.02562 * 17 16 15 32 32 H 1.08998 * 109.47154 * 300.00146 * 18 13 3 33 33 H 1.08995 * 109.47346 * 60.00912 * 18 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2690 2.0332 0.3308 5 6 3.1907 1.3299 0.9363 6 1 4.1736 1.5719 0.5599 7 6 3.0160 1.0430 2.2736 8 7 1.8191 0.7486 2.7321 9 14 4.4796 1.0725 3.4341 10 1 4.0292 0.7319 4.8076 11 1 5.4887 0.0808 2.9833 12 1 5.0840 2.4289 3.4341 13 6 2.4740 1.6573 -1.4149 14 6 2.9749 3.1026 -1.4429 15 6 3.4393 3.4541 -2.8576 16 6 2.2692 3.3009 -3.8314 17 6 1.7683 1.8555 -3.8034 18 6 1.3035 1.5041 -2.3882 19 1 -0.3634 0.4264 -0.9350 20 1 -0.3633 -1.0229 0.0982 21 1 -0.3634 0.5965 0.8368 22 1 1.0591 0.7337 2.1296 23 1 3.2817 0.9871 -1.7096 24 1 2.1673 3.7727 -1.1482 25 1 3.8088 3.2117 -0.7495 26 1 4.2470 2.7840 -3.1520 27 1 3.7957 4.4840 -2.8777 28 1 2.5999 3.5518 -4.8392 29 1 1.4615 3.9711 -3.5371 30 1 2.5760 1.1854 -4.0976 31 1 0.9350 1.7463 -4.4974 32 1 0.9468 0.4744 -2.3682 33 1 0.4960 2.1743 -2.0936 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261158493.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:14 Heat of formation + Delta-G solvation = -102.535928 kcal Electronic energy + Delta-G solvation = -13513.583901 eV Core-core repulsion = 11344.069552 eV Total energy + Delta-G solvation = -2169.514349 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.14296 -37.87044 -34.69229 -32.51123 -31.56915 -28.63983 -26.68489 -24.72289 -23.38857 -22.01905 -20.59315 -19.09978 -17.07350 -16.93466 -15.83227 -15.58869 -15.21146 -14.99825 -14.89048 -14.56681 -13.99197 -13.32754 -12.99881 -12.86335 -12.66525 -12.42864 -12.14886 -12.00914 -11.93336 -11.76382 -11.42029 -11.22057 -11.09798 -10.69834 -10.51980 -9.80105 -8.61516 -6.39800 1.51757 1.60356 1.79412 2.56421 3.02720 3.62674 3.83652 3.95472 3.99659 4.31151 4.40182 4.44603 4.55698 4.61445 4.64336 4.70328 4.71381 4.72941 4.83454 4.85617 5.13809 5.18107 5.24642 5.33919 5.37148 5.42321 5.55281 5.63164 6.05033 6.18265 6.60147 6.86331 7.49903 8.78373 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.039689 B = 0.011961 C = 0.009655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.319514 B = 2340.351462 C = 2899.331308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.415 6.415 3 C 0.203 3.797 4 H -0.019 1.019 5 C -0.616 4.616 6 H 0.054 0.946 7 C -0.024 4.024 8 N -0.928 5.928 9 Si 1.114 2.886 10 H -0.283 1.283 11 H -0.274 1.274 12 H -0.266 1.266 13 C -0.085 4.085 14 C -0.100 4.100 15 C -0.113 4.113 16 C -0.114 4.114 17 C -0.113 4.113 18 C -0.111 4.111 19 H 0.049 0.951 20 H 0.081 0.919 21 H 0.014 0.986 22 H 0.267 0.733 23 H 0.045 0.955 24 H 0.046 0.954 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.166 4.191 -10.997 11.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.335 6.335 3 C 0.148 3.852 4 H -0.001 1.001 5 C -0.653 4.653 6 H 0.072 0.928 7 C -0.224 4.224 8 N -0.566 5.566 9 Si 0.935 3.065 10 H -0.209 1.209 11 H -0.199 1.199 12 H -0.191 1.191 13 C -0.104 4.104 14 C -0.138 4.138 15 C -0.151 4.151 16 C -0.151 4.151 17 C -0.150 4.150 18 C -0.149 4.149 19 H 0.068 0.932 20 H 0.099 0.901 21 H 0.033 0.967 22 H 0.078 0.922 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.707 3.814 -9.456 10.220 hybrid contribution -0.923 0.175 -1.163 1.495 sum -0.216 3.988 -10.619 11.345 Atomic orbital electron populations 1.22741 0.83316 1.01652 0.98881 1.88041 1.18364 1.32279 1.94796 1.19924 0.91803 0.80424 0.93092 1.00113 1.22487 0.95610 1.51871 0.95307 0.92803 1.27333 1.03655 0.91798 0.99623 1.70825 1.00720 1.45186 1.39844 0.83003 0.71713 0.77892 0.73884 1.20893 1.19908 1.19088 1.21367 0.97483 0.96749 0.94756 1.21384 1.00004 0.94874 0.97553 1.21535 0.98298 1.01509 0.93737 1.21526 0.97739 0.96249 0.99585 1.21525 1.00990 0.97209 0.95285 1.21615 0.97109 1.00417 0.95721 0.93238 0.90080 0.96704 0.92198 0.93636 0.93552 0.93367 0.92316 0.90799 0.89989 0.92112 0.92316 0.90546 0.92849 0.93209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.34 9.80 113.37 1.11 2.45 16 2 O -0.41 -22.16 8.92 -148.98 -1.33 -23.49 16 3 C 0.20 10.74 1.37 29.85 0.04 10.78 16 4 H -0.02 -1.06 7.47 -2.38 -0.02 -1.08 16 5 C -0.62 -35.90 8.09 25.60 0.21 -35.69 16 6 H 0.05 3.07 7.08 -2.91 -0.02 3.05 16 7 C -0.02 -1.39 5.40 84.66 0.46 -0.93 16 8 N -0.93 -58.40 13.53 21.45 0.29 -58.11 16 9 Si 1.11 51.45 29.90 68.60 2.05 53.50 16 10 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 12 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 13 C -0.08 -3.63 1.91 -10.80 -0.02 -3.65 16 14 C -0.10 -3.82 5.02 30.59 0.15 -3.67 16 15 C -0.11 -3.24 5.92 30.59 0.18 -3.05 16 16 C -0.11 -2.79 5.92 30.59 0.18 -2.61 16 17 C -0.11 -3.05 5.92 30.61 0.18 -2.87 16 18 C -0.11 -3.92 3.93 30.61 0.12 -3.80 16 19 H 0.05 1.85 5.99 -2.39 -0.01 1.84 16 20 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 21 H 0.01 0.67 6.76 -2.39 -0.02 0.66 16 22 H 0.27 16.69 4.79 -92.71 -0.44 16.25 16 23 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 24 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.05 2.02 6.97 -2.39 -0.02 2.00 16 26 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 31 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.05 1.96 6.41 -2.39 -0.02 1.94 16 33 H 0.05 1.73 8.03 -2.39 -0.02 1.71 16 Total: -1.00 -67.20 253.73 5.01 -62.19 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: 1.38 Total: 8.93 kcal Atomic # 6 Polarization: -45.65 SS G_CDS: 2.61 Total: -43.03 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: 0.29 Total: -58.11 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -1.33 Total: -23.49 kcal Atomic # 14 Polarization: 51.45 SS G_CDS: 2.05 Total: 53.50 kcal Total: -67.20 5.01 -62.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261158493.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.341 kcal (2) G-P(sol) polarization free energy of solvation -67.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds