Wall clock time and date at job start Mon Mar 30 2020 02:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 114.00238 * 2 1 4 4 H 1.08994 * 109.47009 * 347.68592 * 3 2 1 5 5 C 1.50706 * 109.47093 * 227.68402 * 3 2 1 6 6 H 1.07993 * 120.00041 * 236.01605 * 5 3 2 7 7 C 1.37878 * 119.99842 * 56.29453 * 5 3 2 8 8 N 1.31513 * 120.00028 * 5.65603 * 7 5 3 9 9 Si 1.86794 * 120.00106 * 185.65286 * 7 5 3 10 10 H 1.48500 * 109.46968 * 59.99910 * 9 7 5 11 11 H 1.48503 * 109.47167 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47200 * 300.00035 * 9 7 5 13 13 C 1.53004 * 109.46773 * 107.68998 * 3 2 1 14 14 C 1.52995 * 109.47445 * 54.65958 * 13 3 2 15 15 C 1.52995 * 109.47271 * 180.02562 * 14 13 3 16 16 C 1.52993 * 109.47378 * 59.99185 * 15 14 13 17 17 C 1.53004 * 109.47460 * 300.00462 * 16 15 14 18 18 C 1.52993 * 109.47067 * 59.99966 * 17 16 15 19 19 H 1.09000 * 109.46814 * 306.15455 * 1 2 3 20 20 H 1.09005 * 109.47111 * 66.15301 * 1 2 3 21 21 H 1.09000 * 109.47751 * 186.15078 * 1 2 3 22 22 H 0.97005 * 120.00088 * 180.02562 * 8 7 5 23 23 H 1.08997 * 109.46891 * 174.65836 * 13 3 2 24 24 H 1.09013 * 109.46735 * 299.99817 * 14 13 3 25 25 H 1.08999 * 109.47318 * 59.99698 * 14 13 3 26 26 H 1.09001 * 109.47111 * 299.99599 * 15 14 13 27 27 H 1.08998 * 109.47604 * 179.97438 * 15 14 13 28 28 H 1.09007 * 109.47539 * 180.02562 * 16 15 14 29 29 H 1.09001 * 109.47337 * 60.00466 * 16 15 14 30 30 H 1.09001 * 109.46919 * 299.99518 * 17 16 15 31 31 H 1.08999 * 109.47193 * 180.02562 * 17 16 15 32 32 H 1.08994 * 109.47614 * 180.02562 * 18 17 16 33 33 H 1.09001 * 109.47616 * 59.99979 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2408 2.0457 -0.2192 5 6 3.0884 1.3752 -1.0507 6 1 4.0919 1.6649 -0.7762 7 6 2.7923 1.0747 -2.3633 8 7 1.5488 0.8359 -2.7188 9 14 4.1572 1.0070 -3.6367 10 1 5.1475 -0.0285 -3.2463 11 1 3.5809 0.6666 -4.9624 12 1 4.8282 2.3295 -3.7140 13 6 2.6181 1.5929 1.3744 14 6 3.6020 0.4798 1.7399 15 6 4.2093 0.7670 3.1145 16 6 3.0955 0.8275 4.1616 17 6 2.1116 1.9408 3.7960 18 6 1.5042 1.6535 2.4216 19 1 -0.3633 0.6063 0.8298 20 1 -0.3633 0.4155 -0.9400 21 1 -0.3634 -1.0217 0.1101 22 1 1.3406 0.6242 -3.6423 23 1 3.1434 2.5475 1.3467 24 1 3.0765 -0.4749 1.7675 25 1 4.3953 0.4365 0.9936 26 1 4.7346 1.7217 3.0873 27 1 4.9099 -0.0262 3.3751 28 1 3.5282 1.0326 5.1409 29 1 2.5702 -0.1271 4.1889 30 1 2.6369 2.8955 3.7689 31 1 1.3184 1.9841 4.5424 32 1 0.8036 2.4467 2.1609 33 1 0.9789 0.6988 2.4487 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261158495.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:15 Heat of formation + Delta-G solvation = -78.816611 kcal Electronic energy + Delta-G solvation = -13532.492263 eV Core-core repulsion = 11364.006460 eV Total energy + Delta-G solvation = -2168.485802 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.29136 -35.68264 -32.39875 -30.75025 -30.12302 -26.75931 -24.83374 -22.96237 -21.82907 -20.13344 -18.81835 -16.47373 -15.07515 -14.74961 -14.25241 -13.79492 -13.65509 -13.48059 -13.08897 -12.46743 -11.95117 -11.71693 -11.55273 -11.05038 -10.89112 -10.75856 -10.58915 -10.42439 -10.08606 -10.02928 -9.66799 -9.46690 -9.28886 -9.02467 -8.31729 -7.65292 -5.98857 -4.04809 3.35005 3.39385 3.42734 4.46503 5.19493 5.26300 5.34712 5.36513 5.81822 5.86320 6.00314 6.09729 6.11073 6.16854 6.22153 6.28281 6.44342 6.49340 6.62788 6.66080 6.70919 6.86719 6.92134 7.02597 7.17644 7.20719 7.40697 7.48186 7.95544 8.38682 8.90258 9.17863 9.63608 11.10342 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.042755 B = 0.011726 C = 0.009991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.731068 B = 2387.324030 C = 2801.887160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.376 6.376 3 C 0.222 3.778 4 H 0.013 0.987 5 C -0.527 4.527 6 H 0.060 0.940 7 C 0.077 3.923 8 N -0.872 5.872 9 Si 0.890 3.110 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.278 1.278 13 C -0.094 4.094 14 C -0.097 4.097 15 C -0.121 4.121 16 C -0.115 4.115 17 C -0.116 4.116 18 C -0.116 4.116 19 H 0.009 0.991 20 H 0.044 0.956 21 H 0.048 0.952 22 H 0.260 0.740 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.568 0.580 9.109 9.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.295 6.295 3 C 0.166 3.834 4 H 0.031 0.969 5 C -0.565 4.565 6 H 0.078 0.922 7 C -0.127 4.127 8 N -0.510 5.510 9 Si 0.717 3.283 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.113 4.113 14 C -0.134 4.134 15 C -0.159 4.159 16 C -0.153 4.153 17 C -0.154 4.154 18 C -0.153 4.153 19 H 0.028 0.972 20 H 0.063 0.937 21 H 0.066 0.934 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.562 0.371 8.961 8.986 hybrid contribution 0.444 0.150 -0.771 0.902 sum 1.006 0.521 8.190 8.268 Atomic orbital electron populations 1.22436 0.85388 0.98716 0.98746 1.87942 1.15957 1.31065 1.94495 1.19631 0.92445 0.81940 0.89370 0.96918 1.21230 0.96252 1.47144 0.91837 0.92151 1.24989 0.95166 0.94174 0.98370 1.69935 1.17564 1.45879 1.17600 0.86720 0.82520 0.78497 0.80528 1.20140 1.21371 1.20321 1.21587 0.95420 0.97952 0.96312 1.21334 0.98743 0.99151 0.94184 1.21620 0.97137 1.00586 0.96548 1.21500 0.97113 0.98969 0.97703 1.21527 0.98070 0.98384 0.97411 1.21652 0.98416 1.00981 0.94266 0.97237 0.93746 0.93352 0.93049 0.92255 0.92003 0.91600 0.92834 0.93125 0.93275 0.92397 0.92631 0.93198 0.93211 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.01 10.29 101.05 1.04 2.05 16 2 O -0.38 -9.74 8.42 -35.23 -0.30 -10.03 16 3 C 0.22 5.67 1.80 -27.88 -0.05 5.62 16 4 H 0.01 0.36 7.64 -51.93 -0.40 -0.04 16 5 C -0.53 -14.70 8.04 -34.44 -0.28 -14.98 16 6 H 0.06 1.64 7.24 -52.49 -0.38 1.26 16 7 C 0.08 2.19 5.35 -17.82 -0.10 2.09 16 8 N -0.87 -25.39 12.33 55.43 0.68 -24.71 16 9 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 13 C -0.09 -1.98 1.97 -90.62 -0.18 -2.16 16 14 C -0.10 -1.93 4.82 -26.74 -0.13 -2.06 16 15 C -0.12 -1.96 5.92 -26.74 -0.16 -2.11 16 16 C -0.12 -1.69 5.92 -26.73 -0.16 -1.85 16 17 C -0.12 -1.76 5.92 -26.73 -0.16 -1.92 16 18 C -0.12 -2.11 4.44 -26.73 -0.12 -2.22 16 19 H 0.01 0.19 6.74 -51.93 -0.35 -0.16 16 20 H 0.04 1.08 7.70 -51.93 -0.40 0.68 16 21 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 22 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 23 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 24 H 0.06 1.31 7.55 -51.92 -0.39 0.92 16 25 H 0.07 1.42 7.06 -51.93 -0.37 1.06 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 1.15 6.81 -51.93 -0.35 0.80 16 LS Contribution 258.41 15.07 3.89 3.89 Total: -1.00 -28.95 258.41 -6.60 -35.55 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -5.58 Total: -3.71 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: -0.28 Total: -17.55 kcal Atomic # 7 Polarization: -25.39 SS G_CDS: 0.68 Total: -24.71 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -0.30 Total: -10.03 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.95 -6.60 -35.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261158495.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.267 kcal (2) G-P(sol) polarization free energy of solvation -28.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds