Wall clock time and date at job start Mon Mar 30 2020 02:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 114.00238 * 2 1 4 4 H 1.08994 * 109.47009 * 347.68592 * 3 2 1 5 5 C 1.50706 * 109.47093 * 227.68402 * 3 2 1 6 6 H 1.07993 * 120.00041 * 236.01605 * 5 3 2 7 7 C 1.37878 * 119.99842 * 56.29453 * 5 3 2 8 8 N 1.31513 * 120.00028 * 5.65603 * 7 5 3 9 9 Si 1.86794 * 120.00106 * 185.65286 * 7 5 3 10 10 H 1.48500 * 109.46968 * 59.99910 * 9 7 5 11 11 H 1.48503 * 109.47167 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47200 * 300.00035 * 9 7 5 13 13 C 1.53004 * 109.46773 * 107.68998 * 3 2 1 14 14 C 1.52995 * 109.47445 * 54.65958 * 13 3 2 15 15 C 1.52995 * 109.47271 * 180.02562 * 14 13 3 16 16 C 1.52993 * 109.47378 * 59.99185 * 15 14 13 17 17 C 1.53004 * 109.47460 * 300.00462 * 16 15 14 18 18 C 1.52993 * 109.47067 * 59.99966 * 17 16 15 19 19 H 1.09000 * 109.46814 * 306.15455 * 1 2 3 20 20 H 1.09005 * 109.47111 * 66.15301 * 1 2 3 21 21 H 1.09000 * 109.47751 * 186.15078 * 1 2 3 22 22 H 0.97005 * 120.00088 * 180.02562 * 8 7 5 23 23 H 1.08997 * 109.46891 * 174.65836 * 13 3 2 24 24 H 1.09013 * 109.46735 * 299.99817 * 14 13 3 25 25 H 1.08999 * 109.47318 * 59.99698 * 14 13 3 26 26 H 1.09001 * 109.47111 * 299.99599 * 15 14 13 27 27 H 1.08998 * 109.47604 * 179.97438 * 15 14 13 28 28 H 1.09007 * 109.47539 * 180.02562 * 16 15 14 29 29 H 1.09001 * 109.47337 * 60.00466 * 16 15 14 30 30 H 1.09001 * 109.46919 * 299.99518 * 17 16 15 31 31 H 1.08999 * 109.47193 * 180.02562 * 17 16 15 32 32 H 1.08994 * 109.47614 * 180.02562 * 18 17 16 33 33 H 1.09001 * 109.47616 * 59.99979 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2408 2.0457 -0.2192 5 6 3.0884 1.3752 -1.0507 6 1 4.0919 1.6649 -0.7762 7 6 2.7923 1.0747 -2.3633 8 7 1.5488 0.8359 -2.7188 9 14 4.1572 1.0070 -3.6367 10 1 5.1475 -0.0285 -3.2463 11 1 3.5809 0.6666 -4.9624 12 1 4.8282 2.3295 -3.7140 13 6 2.6181 1.5929 1.3744 14 6 3.6020 0.4798 1.7399 15 6 4.2093 0.7670 3.1145 16 6 3.0955 0.8275 4.1616 17 6 2.1116 1.9408 3.7960 18 6 1.5042 1.6535 2.4216 19 1 -0.3633 0.6063 0.8298 20 1 -0.3633 0.4155 -0.9400 21 1 -0.3634 -1.0217 0.1101 22 1 1.3406 0.6242 -3.6423 23 1 3.1434 2.5475 1.3467 24 1 3.0765 -0.4749 1.7675 25 1 4.3953 0.4365 0.9936 26 1 4.7346 1.7217 3.0873 27 1 4.9099 -0.0262 3.3751 28 1 3.5282 1.0326 5.1409 29 1 2.5702 -0.1271 4.1889 30 1 2.6369 2.8955 3.7689 31 1 1.3184 1.9841 4.5424 32 1 0.8036 2.4467 2.1609 33 1 0.9789 0.6988 2.4487 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261158495.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:15 Heat of formation + Delta-G solvation = -95.511603 kcal Electronic energy + Delta-G solvation = -13533.216212 eV Core-core repulsion = 11364.006460 eV Total energy + Delta-G solvation = -2169.209752 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.90656 -37.43838 -34.51598 -32.40094 -31.51551 -28.62578 -26.78714 -24.74795 -23.24973 -21.69028 -20.37781 -18.57842 -16.84407 -16.63918 -16.04442 -15.50451 -15.27615 -14.90230 -14.68437 -14.10243 -13.78162 -13.39864 -12.95373 -12.83584 -12.71110 -12.55754 -12.18741 -11.94400 -11.78683 -11.61323 -11.48228 -11.14046 -10.91050 -10.75775 -10.41024 -9.58652 -8.13224 -6.26603 1.40097 1.43104 1.49907 2.42418 3.08918 3.86735 3.98305 4.02553 4.08069 4.48547 4.53278 4.63746 4.72861 4.75388 4.78417 4.84079 4.90276 4.91206 5.11415 5.18416 5.23084 5.30715 5.38721 5.44042 5.49435 5.56617 5.64931 5.80187 5.83682 6.30239 6.76192 7.18824 7.45562 8.94828 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.042755 B = 0.011726 C = 0.009991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.731068 B = 2387.324030 C = 2801.887160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.396 6.396 3 C 0.221 3.779 4 H -0.018 1.018 5 C -0.549 4.549 6 H 0.059 0.941 7 C 0.025 3.975 8 N -0.902 5.902 9 Si 0.954 3.046 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.268 1.268 13 C -0.090 4.090 14 C -0.091 4.091 15 C -0.116 4.116 16 C -0.113 4.113 17 C -0.112 4.112 18 C -0.111 4.111 19 H 0.031 0.969 20 H 0.018 0.982 21 H 0.072 0.928 22 H 0.260 0.740 23 H 0.054 0.946 24 H 0.045 0.955 25 H 0.039 0.961 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.334 0.613 10.660 10.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.315 6.315 3 C 0.165 3.835 4 H 0.000 1.000 5 C -0.586 4.586 6 H 0.077 0.923 7 C -0.176 4.176 8 N -0.540 5.540 9 Si 0.779 3.221 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.193 1.193 13 C -0.109 4.109 14 C -0.129 4.129 15 C -0.153 4.153 16 C -0.150 4.150 17 C -0.149 4.149 18 C -0.149 4.149 19 H 0.049 0.951 20 H 0.037 0.963 21 H 0.090 0.910 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.329 0.411 10.523 10.614 hybrid contribution 0.158 0.140 -1.268 1.285 sum 1.487 0.551 9.255 9.390 Atomic orbital electron populations 1.22482 0.83775 1.00469 0.98281 1.87866 1.17785 1.31132 1.94721 1.19585 0.91243 0.81055 0.91603 1.00001 1.21624 0.96790 1.47181 0.93008 0.92316 1.25806 0.97440 0.93925 1.00461 1.70063 1.19240 1.46719 1.17938 0.85694 0.79618 0.78813 0.77937 1.19868 1.20916 1.19264 1.21461 0.96517 0.98013 0.94868 1.21225 0.97562 0.97829 0.96239 1.21570 0.97919 1.01491 0.94333 1.21504 0.96354 0.98699 0.98456 1.21508 0.98898 0.98908 0.95594 1.21578 0.97313 1.00512 0.95453 0.95081 0.96285 0.90951 0.93109 0.92721 0.93651 0.94173 0.92173 0.91519 0.90237 0.92555 0.91956 0.90788 0.93488 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.13 10.29 113.37 1.17 3.30 16 2 O -0.40 -20.88 8.42 -148.98 -1.25 -22.13 16 3 C 0.22 11.58 1.80 29.85 0.05 11.63 16 4 H -0.02 -1.01 7.64 -2.39 -0.02 -1.03 16 5 C -0.55 -31.27 8.04 25.60 0.21 -31.07 16 6 H 0.06 3.27 7.24 -2.91 -0.02 3.25 16 7 C 0.03 1.44 5.35 84.66 0.45 1.89 16 8 N -0.90 -53.62 12.33 21.45 0.26 -53.35 16 9 Si 0.95 44.74 29.54 68.60 2.03 46.77 16 10 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 13 C -0.09 -3.80 1.97 -10.79 -0.02 -3.82 16 14 C -0.09 -3.60 4.82 30.59 0.15 -3.46 16 15 C -0.12 -3.44 5.92 30.59 0.18 -3.26 16 16 C -0.11 -2.90 5.92 30.59 0.18 -2.71 16 17 C -0.11 -3.02 5.92 30.59 0.18 -2.84 16 18 C -0.11 -3.91 4.44 30.59 0.14 -3.77 16 19 H 0.03 1.25 6.74 -2.39 -0.02 1.23 16 20 H 0.02 0.94 7.70 -2.38 -0.02 0.92 16 21 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 22 H 0.26 14.73 8.31 -92.70 -0.77 13.96 16 23 H 0.05 2.32 8.14 -2.39 -0.02 2.31 16 24 H 0.04 1.92 7.55 -2.38 -0.02 1.90 16 25 H 0.04 1.75 7.06 -2.39 -0.02 1.74 16 26 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.06 1.62 8.14 -2.39 -0.02 1.61 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.05 1.93 6.81 -2.39 -0.02 1.92 16 Total: -1.00 -62.65 258.41 4.77 -57.88 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: 1.05 Total: 4.95 kcal Atomic # 6 Polarization: -36.79 SS G_CDS: 2.68 Total: -34.11 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 0.26 Total: -53.35 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -1.25 Total: -22.13 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -62.65 4.77 -57.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261158495.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.634 kcal (2) G-P(sol) polarization free energy of solvation -62.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds