Wall clock time and date at job start Mon Mar 30 2020 01:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47080 * 2 1 4 4 C 1.53002 * 109.46789 * 119.99912 * 2 1 3 5 5 C 1.52995 * 109.47215 * 65.88814 * 4 2 1 6 6 C 1.50705 * 110.43620 * 293.84586 * 5 4 2 7 7 H 1.08004 * 119.99700 * 116.97581 * 6 5 4 8 8 C 1.37872 * 120.00084 * 296.98392 * 6 5 4 9 9 N 1.31517 * 120.00021 * 187.14762 * 8 6 5 10 10 Si 1.86799 * 120.00296 * 7.14548 * 8 6 5 11 11 H 1.48506 * 109.47081 * 87.31700 * 10 8 6 12 12 H 1.48506 * 109.47149 * 327.31889 * 10 8 6 13 13 H 1.48501 * 109.47298 * 207.31969 * 10 8 6 14 14 C 1.54814 * 110.48899 * 171.30714 * 5 4 2 15 15 C 1.55342 * 101.93131 * 220.33714 * 14 5 4 16 16 O 1.44373 * 103.50381 * 37.05032 * 15 14 5 17 17 C 1.43745 * 106.97818 * 319.90911 * 16 15 14 18 18 H 1.09004 * 109.46763 * 287.36102 * 1 2 3 19 19 H 1.08997 * 109.46737 * 47.35520 * 1 2 3 20 20 H 1.08996 * 109.47169 * 167.35390 * 1 2 3 21 21 H 1.08998 * 109.47220 * 239.99368 * 2 1 3 22 22 H 1.09006 * 109.46448 * 180.02562 * 3 2 1 23 23 H 1.08993 * 109.47073 * 299.99278 * 3 2 1 24 24 H 1.08994 * 109.47052 * 60.00076 * 3 2 1 25 25 H 1.09007 * 109.47173 * 305.88601 * 4 2 1 26 26 H 1.09004 * 109.47057 * 185.88816 * 4 2 1 27 27 H 0.96998 * 120.00261 * 179.97438 * 9 8 6 28 28 H 1.09004 * 110.90635 * 338.50677 * 14 5 4 29 29 H 1.08996 * 110.90966 * 102.11042 * 14 5 4 30 30 H 1.09002 * 110.64400 * 278.53360 * 15 14 5 31 31 H 1.09006 * 110.72115 * 155.60801 * 15 14 5 32 32 H 1.09004 * 109.87578 * 267.09369 * 17 16 15 33 33 H 1.08991 * 110.00815 * 146.00804 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6544 -2.2001 1.1775 6 6 0.1575 -2.3578 1.2530 7 1 -0.3834 -2.7828 0.4203 8 6 -0.5214 -1.9595 2.3850 9 7 -1.8037 -2.2241 2.5099 10 14 0.3798 -1.0442 3.7412 11 1 0.3632 0.4122 3.4511 12 1 1.7852 -1.5193 3.8097 13 1 -0.2924 -1.2978 5.0409 14 6 2.3409 -2.9949 2.3149 15 6 2.7507 -4.3056 1.5887 16 8 3.1377 -3.8551 0.2728 17 6 2.1994 -2.8375 -0.1152 18 1 -0.3633 0.3067 0.9809 19 1 -0.3633 0.6962 -0.7559 20 1 -0.3633 -1.0027 -0.2250 21 1 1.8934 -0.5139 -0.8899 22 1 3.1301 1.4424 -0.0005 23 1 1.6768 1.9562 -0.8900 24 1 1.6767 1.9563 0.8899 25 1 1.5931 -0.2718 2.1362 26 1 3.1249 -0.6309 1.3036 27 1 -2.2813 -1.9442 3.3064 28 1 3.2178 -2.4642 2.6860 29 1 1.6403 -3.1994 3.1244 30 1 1.9054 -4.9909 1.5266 31 1 3.5916 -4.7801 2.0947 32 1 1.3819 -3.2837 -0.6816 33 1 2.6990 -2.0805 -0.7196 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261169732.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:47 Heat of formation + Delta-G solvation = -47.778807 kcal Electronic energy + Delta-G solvation = -13962.936210 eV Core-core repulsion = 11795.796308 eV Total energy + Delta-G solvation = -2167.139902 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.06849 -35.83833 -32.77241 -31.13955 -28.64781 -26.45195 -25.33008 -24.61796 -22.01975 -19.70390 -18.74501 -16.37062 -15.71131 -15.33352 -14.28695 -14.15161 -13.62899 -13.21134 -12.74164 -12.53533 -12.03965 -11.90286 -11.71227 -11.38990 -11.24822 -10.54598 -10.51032 -10.32054 -9.99184 -9.72317 -9.65192 -9.48585 -8.96284 -8.91148 -8.75823 -8.44933 -6.12705 -4.04480 3.23963 3.35813 3.37834 4.37536 4.82563 5.14449 5.46741 5.66490 5.73554 5.87862 5.90941 6.00394 6.18736 6.19445 6.32071 6.36220 6.43315 6.49497 6.61631 6.71823 6.77652 6.79335 6.86924 6.92437 7.09488 7.24144 7.28052 7.58898 7.70314 7.82927 8.45832 8.86245 9.50102 10.99455 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.024750 B = 0.022113 C = 0.015401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.031732 B = 1265.907993 C = 1817.602094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 C -0.147 4.147 4 C -0.104 4.104 5 C 0.014 3.986 6 C -0.492 4.492 7 H 0.078 0.922 8 C 0.077 3.923 9 N -0.895 5.895 10 Si 0.863 3.137 11 H -0.282 1.282 12 H -0.245 1.245 13 H -0.302 1.302 14 C -0.148 4.148 15 C 0.054 3.946 16 O -0.398 6.398 17 C 0.063 3.937 18 H 0.047 0.953 19 H 0.018 0.982 20 H 0.095 0.905 21 H 0.062 0.938 22 H 0.044 0.956 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.038 0.962 27 H 0.263 0.737 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.933 2.443 -1.779 7.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.104 4.104 3 C -0.205 4.205 4 C -0.141 4.141 5 C 0.013 3.987 6 C -0.530 4.530 7 H 0.096 0.904 8 C -0.125 4.125 9 N -0.532 5.532 10 Si 0.693 3.307 11 H -0.209 1.209 12 H -0.170 1.170 13 H -0.230 1.230 14 C -0.186 4.186 15 C -0.022 4.022 16 O -0.318 6.318 17 C -0.014 4.014 18 H 0.066 0.934 19 H 0.037 0.963 20 H 0.113 0.887 21 H 0.080 0.920 22 H 0.063 0.937 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.938 2.379 -1.792 7.550 hybrid contribution 0.086 0.782 1.081 1.337 sum 7.024 3.161 -0.711 7.735 Atomic orbital electron populations 1.22093 0.93894 1.03432 0.99899 1.21023 0.97492 0.93922 0.97998 1.21911 0.99906 0.97774 1.00875 1.21947 0.97539 0.97379 0.97233 1.19843 0.97004 0.91113 0.90701 1.20699 0.88282 1.41278 1.02723 0.90381 1.24884 0.94559 0.95404 0.97653 1.69895 1.08613 1.46072 1.28638 0.87527 0.81532 0.80451 0.81173 1.20925 1.16966 1.22991 1.23708 0.99310 0.96065 0.99498 1.23476 0.98584 0.96888 0.83295 1.88677 1.52949 1.56402 1.33739 1.23365 0.91203 0.89228 0.97560 0.93424 0.96287 0.88679 0.91952 0.93669 0.93428 0.93404 0.93209 0.94328 0.92686 0.93149 0.90658 0.92350 0.91030 0.92746 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 7.80 37.16 0.29 -2.56 16 2 C -0.09 -1.63 2.71 -90.62 -0.25 -1.88 16 3 C -0.15 -2.40 9.16 37.16 0.34 -2.06 16 4 C -0.10 -2.15 3.36 -26.73 -0.09 -2.24 16 5 C 0.01 0.32 0.35 -154.13 -0.05 0.26 16 6 C -0.49 -12.53 5.22 -34.44 -0.18 -12.71 16 7 H 0.08 2.18 7.06 -52.48 -0.37 1.81 16 8 C 0.08 2.06 4.41 -17.82 -0.08 1.98 16 9 N -0.89 -25.89 13.96 55.43 0.77 -25.12 16 10 Si 0.86 20.73 22.28 -169.99 -3.79 16.94 16 11 H -0.28 -6.79 6.93 56.52 0.39 -6.40 16 12 H -0.25 -5.47 4.62 56.52 0.26 -5.21 16 13 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 14 C -0.15 -3.13 4.22 -24.53 -0.10 -3.24 16 15 C 0.05 1.05 7.73 38.40 0.30 1.35 16 16 O -0.40 -8.32 11.52 -35.23 -0.41 -8.72 16 17 C 0.06 1.30 6.49 37.73 0.25 1.54 16 18 H 0.05 1.09 6.79 -51.93 -0.35 0.74 16 19 H 0.02 0.34 8.08 -51.93 -0.42 -0.08 16 20 H 0.09 2.19 5.27 -51.93 -0.27 1.92 16 21 H 0.06 1.13 6.06 -51.93 -0.31 0.81 16 22 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.05 1.11 3.19 -51.93 -0.17 0.94 16 26 H 0.04 0.74 8.03 -51.93 -0.42 0.33 16 27 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.05 1.01 7.51 -51.93 -0.39 0.62 16 29 H 0.07 1.68 5.37 -51.93 -0.28 1.40 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.05 1.16 7.41 -51.93 -0.38 0.77 16 33 H 0.07 1.29 6.01 -51.93 -0.31 0.98 16 LS Contribution 237.64 15.07 3.58 3.58 Total: -1.00 -27.46 237.64 -4.49 -31.96 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -5.08 Total: 0.91 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: 0.42 Total: -19.55 kcal Atomic # 7 Polarization: -25.89 SS G_CDS: 0.77 Total: -25.12 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.41 Total: -8.72 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -3.79 Total: 16.94 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -27.46 -4.49 -31.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261169732.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.823 kcal (2) G-P(sol) polarization free energy of solvation -27.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds