Wall clock time and date at job start Mon Mar 30 2020 01:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47080 * 2 1 4 4 C 1.53002 * 109.46789 * 119.99912 * 2 1 3 5 5 C 1.52995 * 109.47215 * 65.88814 * 4 2 1 6 6 C 1.50705 * 110.43620 * 293.84586 * 5 4 2 7 7 H 1.08004 * 119.99700 * 116.97581 * 6 5 4 8 8 C 1.37872 * 120.00084 * 296.98392 * 6 5 4 9 9 N 1.31517 * 120.00021 * 187.14762 * 8 6 5 10 10 Si 1.86799 * 120.00296 * 7.14548 * 8 6 5 11 11 H 1.48506 * 109.47081 * 87.31700 * 10 8 6 12 12 H 1.48506 * 109.47149 * 327.31889 * 10 8 6 13 13 H 1.48501 * 109.47298 * 207.31969 * 10 8 6 14 14 C 1.54814 * 110.48899 * 171.30714 * 5 4 2 15 15 C 1.55342 * 101.93131 * 220.33714 * 14 5 4 16 16 O 1.44373 * 103.50381 * 37.05032 * 15 14 5 17 17 C 1.43745 * 106.97818 * 319.90911 * 16 15 14 18 18 H 1.09004 * 109.46763 * 287.36102 * 1 2 3 19 19 H 1.08997 * 109.46737 * 47.35520 * 1 2 3 20 20 H 1.08996 * 109.47169 * 167.35390 * 1 2 3 21 21 H 1.08998 * 109.47220 * 239.99368 * 2 1 3 22 22 H 1.09006 * 109.46448 * 180.02562 * 3 2 1 23 23 H 1.08993 * 109.47073 * 299.99278 * 3 2 1 24 24 H 1.08994 * 109.47052 * 60.00076 * 3 2 1 25 25 H 1.09007 * 109.47173 * 305.88601 * 4 2 1 26 26 H 1.09004 * 109.47057 * 185.88816 * 4 2 1 27 27 H 0.96998 * 120.00261 * 179.97438 * 9 8 6 28 28 H 1.09004 * 110.90635 * 338.50677 * 14 5 4 29 29 H 1.08996 * 110.90966 * 102.11042 * 14 5 4 30 30 H 1.09002 * 110.64400 * 278.53360 * 15 14 5 31 31 H 1.09006 * 110.72115 * 155.60801 * 15 14 5 32 32 H 1.09004 * 109.87578 * 267.09369 * 17 16 15 33 33 H 1.08991 * 110.00815 * 146.00804 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6544 -2.2001 1.1775 6 6 0.1575 -2.3578 1.2530 7 1 -0.3834 -2.7828 0.4203 8 6 -0.5214 -1.9595 2.3850 9 7 -1.8037 -2.2241 2.5099 10 14 0.3798 -1.0442 3.7412 11 1 0.3632 0.4122 3.4511 12 1 1.7852 -1.5193 3.8097 13 1 -0.2924 -1.2978 5.0409 14 6 2.3409 -2.9949 2.3149 15 6 2.7507 -4.3056 1.5887 16 8 3.1377 -3.8551 0.2728 17 6 2.1994 -2.8375 -0.1152 18 1 -0.3633 0.3067 0.9809 19 1 -0.3633 0.6962 -0.7559 20 1 -0.3633 -1.0027 -0.2250 21 1 1.8934 -0.5139 -0.8899 22 1 3.1301 1.4424 -0.0005 23 1 1.6768 1.9562 -0.8900 24 1 1.6767 1.9563 0.8899 25 1 1.5931 -0.2718 2.1362 26 1 3.1249 -0.6309 1.3036 27 1 -2.2813 -1.9442 3.3064 28 1 3.2178 -2.4642 2.6860 29 1 1.6403 -3.1994 3.1244 30 1 1.9054 -4.9909 1.5266 31 1 3.5916 -4.7801 2.0947 32 1 1.3819 -3.2837 -0.6816 33 1 2.6990 -2.0805 -0.7196 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261169732.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:47 Heat of formation + Delta-G solvation = -66.003485 kcal Electronic energy + Delta-G solvation = -13963.726492 eV Core-core repulsion = 11795.796308 eV Total energy + Delta-G solvation = -2167.930184 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.74512 -37.44125 -34.63598 -32.95999 -30.25326 -28.12383 -26.91680 -26.49246 -23.64641 -21.40298 -20.42121 -18.29231 -17.47203 -17.01452 -15.96212 -15.79984 -15.35151 -14.76349 -14.56870 -14.27376 -13.62953 -13.56640 -13.37870 -12.99215 -12.86716 -12.32705 -12.23762 -11.99180 -11.63313 -11.45977 -11.33191 -11.13435 -10.83978 -10.65986 -10.48953 -10.38077 -8.22304 -6.14713 1.32230 1.39306 1.45222 2.37658 3.12603 3.23233 3.89656 4.11619 4.20993 4.31086 4.36675 4.44032 4.57496 4.66748 4.82411 4.86469 4.93302 5.02113 5.03681 5.08516 5.15625 5.19035 5.29661 5.33288 5.38799 5.59498 5.65543 5.78147 5.94735 6.03679 6.40335 6.78900 7.41910 8.93516 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.024750 B = 0.022113 C = 0.015401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.031732 B = 1265.907993 C = 1817.602094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.086 4.086 3 C -0.142 4.142 4 C -0.105 4.105 5 C 0.006 3.994 6 C -0.471 4.471 7 H 0.040 0.960 8 C 0.030 3.970 9 N -0.946 5.946 10 Si 0.908 3.092 11 H -0.283 1.283 12 H -0.212 1.212 13 H -0.316 1.316 14 C -0.152 4.152 15 C 0.055 3.945 16 O -0.401 6.401 17 C 0.067 3.933 18 H 0.019 0.981 19 H 0.040 0.960 20 H 0.063 0.937 21 H 0.075 0.925 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.039 0.961 25 H 0.035 0.965 26 H 0.064 0.936 27 H 0.260 0.740 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.108 0.892 32 H 0.038 0.962 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.727 3.292 -2.014 10.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.105 4.105 3 C -0.200 4.200 4 C -0.142 4.142 5 C 0.005 3.995 6 C -0.509 4.509 7 H 0.058 0.942 8 C -0.167 4.167 9 N -0.587 5.587 10 Si 0.737 3.263 11 H -0.211 1.211 12 H -0.135 1.135 13 H -0.245 1.245 14 C -0.190 4.190 15 C -0.021 4.021 16 O -0.321 6.321 17 C -0.009 4.009 18 H 0.038 0.962 19 H 0.059 0.941 20 H 0.082 0.918 21 H 0.094 0.906 22 H 0.085 0.915 23 H 0.083 0.917 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.126 0.874 32 H 0.056 0.944 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.768 3.223 -2.042 10.487 hybrid contribution -0.823 0.463 1.053 1.415 sum 8.944 3.686 -0.989 9.725 Atomic orbital electron populations 1.21938 0.95964 1.01931 0.98818 1.21045 0.95573 0.96085 0.97765 1.21854 1.01259 0.95440 1.01405 1.21940 0.99036 0.95829 0.97430 1.19884 0.94497 0.92861 0.92226 1.20793 0.90331 1.38912 1.00816 0.94236 1.25462 0.94874 0.96440 0.99885 1.70033 1.10509 1.48680 1.29446 0.86797 0.82205 0.79246 0.78029 1.21089 1.13474 1.24485 1.23691 0.99575 0.97014 0.98744 1.23571 0.99781 0.96034 0.82760 1.88679 1.52640 1.56371 1.34366 1.23292 0.91117 0.89610 0.96917 0.96220 0.94135 0.91772 0.90638 0.91489 0.91716 0.94179 0.94704 0.91735 0.93143 0.91056 0.92183 0.93499 0.87386 0.94368 0.89093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.34 7.80 71.98 0.56 -4.78 16 2 C -0.09 -3.04 2.71 -10.79 -0.03 -3.07 16 3 C -0.14 -4.08 9.16 71.98 0.66 -3.42 16 4 C -0.11 -4.05 3.36 30.59 0.10 -3.95 16 5 C 0.01 0.27 0.35 -51.94 -0.02 0.25 16 6 C -0.47 -24.34 5.22 25.60 0.13 -24.21 16 7 H 0.04 2.31 7.06 -2.91 -0.02 2.29 16 8 C 0.03 1.65 4.41 84.65 0.37 2.03 16 9 N -0.95 -56.99 13.96 21.45 0.30 -56.69 16 10 Si 0.91 42.62 22.28 68.60 1.53 44.15 16 11 H -0.28 -13.27 6.93 99.48 0.69 -12.58 16 12 H -0.21 -8.74 4.62 99.48 0.46 -8.28 16 13 H -0.32 -15.43 7.11 99.48 0.71 -14.73 16 14 C -0.15 -6.03 4.22 32.02 0.14 -5.89 16 15 C 0.05 1.98 7.73 72.79 0.56 2.54 16 16 O -0.40 -15.55 11.52 -148.98 -1.72 -17.27 16 17 C 0.07 2.63 6.49 72.35 0.47 3.10 16 18 H 0.02 0.88 6.79 -2.38 -0.02 0.86 16 19 H 0.04 1.45 8.08 -2.39 -0.02 1.43 16 20 H 0.06 3.02 5.27 -2.39 -0.01 3.01 16 21 H 0.08 2.47 6.06 -2.39 -0.01 2.46 16 22 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 23 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.03 1.46 3.19 -2.38 -0.01 1.45 16 26 H 0.06 2.18 8.03 -2.38 -0.02 2.16 16 27 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 28 H 0.07 2.54 7.51 -2.39 -0.02 2.52 16 29 H 0.06 2.56 5.37 -2.39 -0.01 2.55 16 30 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.11 3.14 8.14 -2.38 -0.02 3.12 16 32 H 0.04 1.61 7.41 -2.38 -0.02 1.59 16 33 H 0.09 3.15 6.01 -2.39 -0.01 3.13 16 Total: -1.00 -59.63 237.64 3.88 -55.76 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 0.82 Total: 11.46 kcal Atomic # 6 Polarization: -40.36 SS G_CDS: 2.95 Total: -37.41 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: 0.30 Total: -56.69 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -1.72 Total: -17.27 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 1.53 Total: 44.15 kcal Total: -59.63 3.88 -55.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261169732.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.246 kcal (2) G-P(sol) polarization free energy of solvation -59.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds