Wall clock time and date at job start Mon Mar 30 2020 02:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86798 * 120.00447 * 2 1 4 4 H 1.48502 * 109.47219 * 269.99720 * 3 2 1 5 5 H 1.48504 * 109.46931 * 29.99206 * 3 2 1 6 6 H 1.48500 * 109.47508 * 149.99238 * 3 2 1 7 7 C 1.37879 * 119.99880 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99902 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00097 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.47049 * 180.02562 * 9 7 2 11 11 H 1.09004 * 108.97151 * 303.91311 * 10 9 7 12 12 C 1.45877 * 109.04088 * 62.83422 * 10 9 7 13 13 C 1.53983 * 112.66523 * 182.06355 * 12 10 9 14 14 N 1.44224 * 108.20939 * 278.62759 * 13 12 10 15 15 C 1.47938 * 113.69738 * 95.54965 * 14 13 12 16 16 C 1.53917 * 113.23416 * 317.94474 * 15 14 13 17 17 C 1.50530 * 112.94235 * 317.81547 * 16 15 14 18 18 H 1.08999 * 109.57804 * 211.56317 * 17 16 15 19 19 N 1.46898 * 109.57329 * 331.81741 * 17 16 15 20 20 H 0.97000 * 120.00229 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47508 * 59.99960 * 9 7 2 22 22 H 1.09004 * 109.46713 * 300.00042 * 9 7 2 23 23 H 1.09000 * 108.83928 * 302.88040 * 12 10 9 24 24 H 1.08992 * 108.85195 * 61.34427 * 12 10 9 25 25 H 1.09002 * 109.69643 * 38.30955 * 13 12 10 26 26 H 1.08998 * 109.69518 * 158.89477 * 13 12 10 27 27 H 1.00901 * 111.07090 * 329.49774 * 14 13 12 28 28 H 1.08999 * 108.71208 * 197.01730 * 15 14 13 29 29 H 1.09001 * 108.71418 * 78.87958 * 15 14 13 30 30 H 1.08999 * 108.78656 * 78.71375 * 16 15 14 31 31 H 1.09003 * 108.78807 * 196.92544 * 16 15 14 32 32 H 1.00903 * 111.00204 * 177.20325 * 19 17 16 33 33 H 1.00901 * 111.00395 * 301.16007 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4401 0.7002 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 6 4.0213 -2.6366 0.0010 11 1 3.5969 -3.1626 0.8562 12 6 3.5868 -3.2949 -1.2262 13 6 4.0138 -4.7730 -1.2898 14 7 5.3868 -4.8270 -1.7280 15 6 6.3618 -4.9163 -0.6189 16 6 6.0220 -3.9923 0.5642 17 6 5.5613 -2.6269 0.1289 18 1 5.8614 -1.8866 0.8704 19 7 6.1633 -2.2952 -1.1694 20 1 -0.4850 0.8400 -0.0004 21 1 3.8745 -0.6801 0.8911 22 1 3.8751 -0.6805 -0.8889 23 1 2.5001 -3.2393 -1.2896 24 1 4.0161 -2.7690 -2.0789 25 1 3.9250 -5.2239 -0.3015 26 1 3.3799 -5.3083 -1.9967 27 1 5.6035 -4.0534 -2.3385 28 1 7.3483 -4.6501 -0.9983 29 1 6.3915 -5.9456 -0.2615 30 1 5.2337 -4.4564 1.1569 31 1 6.9084 -3.8811 1.1887 32 1 5.8329 -1.4023 -1.5036 33 1 7.1708 -2.3108 -1.1155 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261226353.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:22 Heat of formation + Delta-G solvation = -8.690244 kcal Electronic energy + Delta-G solvation = -13513.855277 eV Core-core repulsion = 11380.703133 eV Total energy + Delta-G solvation = -2133.152144 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.25693 -34.32580 -33.33772 -31.94944 -29.76884 -28.05165 -24.60020 -24.10093 -21.41799 -19.80129 -18.63271 -16.96117 -15.85159 -15.47056 -14.96426 -14.36336 -14.03467 -13.47876 -12.84472 -12.77007 -12.56066 -12.20504 -11.79263 -11.50579 -11.18435 -10.91790 -10.54193 -10.42311 -10.15289 -9.86457 -9.78603 -9.31224 -9.04212 -8.56034 -8.49308 -7.59153 -6.05622 -4.02863 3.26851 3.34747 3.36633 4.42315 4.77073 4.98911 5.15532 5.27119 5.33001 5.44351 5.65929 5.78153 5.80371 6.02515 6.14056 6.17351 6.26721 6.34458 6.51295 6.73027 6.87736 6.91332 7.20956 7.26458 7.35627 7.52051 7.70191 7.75568 7.80216 8.15087 8.52949 8.99651 9.56902 11.07703 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.053357 B = 0.010380 C = 0.009450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.640817 B = 2696.799852 C = 2962.365969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.269 1.269 7 C -0.514 4.514 8 H 0.074 0.926 9 C -0.010 4.010 10 C -0.064 4.064 11 H 0.060 0.940 12 C -0.130 4.130 13 C 0.067 3.933 14 N -0.693 5.693 15 C 0.086 3.914 16 C -0.149 4.149 17 C 0.090 3.910 18 H 0.032 0.968 19 N -0.840 5.840 20 H 0.262 0.738 21 H 0.009 0.991 22 H 0.009 0.991 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.358 0.642 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.343 0.657 33 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.467 -5.458 -1.002 13.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.194 1.194 7 C -0.552 4.552 8 H 0.092 0.908 9 C -0.047 4.047 10 C -0.082 4.082 11 H 0.078 0.922 12 C -0.169 4.169 13 C -0.063 4.063 14 N -0.326 5.326 15 C -0.044 4.044 16 C -0.188 4.188 17 C -0.021 4.021 18 H 0.050 0.950 19 N -0.370 5.370 20 H 0.072 0.928 21 H 0.028 0.972 22 H 0.027 0.973 23 H 0.091 0.909 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.181 0.819 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.157 0.843 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 11.905 -6.653 -1.342 13.704 hybrid contribution 0.670 2.814 1.032 3.071 sum 12.575 -3.839 -0.310 13.151 Atomic orbital electron populations 1.69908 1.06246 1.26788 1.51278 1.25035 0.94707 0.99061 0.94750 0.86790 0.80212 0.83891 0.78361 1.20364 1.21476 1.19398 1.21140 0.89356 0.94368 1.50373 0.90763 1.19702 0.97426 0.91941 0.95653 1.20095 0.90735 0.98935 0.98484 0.92198 1.21008 1.02524 0.94918 0.98481 1.21667 0.89328 0.96112 0.99221 1.59694 1.02242 1.51737 1.18966 1.21892 0.95507 0.96779 0.90247 1.22066 1.00876 0.96427 0.99459 1.21334 0.96538 0.94856 0.89365 0.95027 1.58909 1.10921 1.38482 1.28685 0.92791 0.97224 0.97264 0.90896 0.91808 0.92777 0.92135 0.81854 0.92517 0.93002 0.91788 0.93096 0.84321 0.85826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.81 13.96 55.43 0.77 -27.03 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.51 -14.40 8.86 -34.44 -0.31 -14.70 16 8 H 0.07 2.24 7.06 -52.49 -0.37 1.87 16 9 C -0.01 -0.23 3.31 -27.88 -0.09 -0.32 16 10 C -0.06 -1.23 1.60 -93.19 -0.15 -1.38 16 11 H 0.06 1.23 7.59 -51.93 -0.39 0.84 16 12 C -0.13 -2.45 4.27 -29.59 -0.13 -2.57 16 13 C 0.07 1.09 6.28 -4.74 -0.03 1.06 16 14 N -0.69 -10.36 6.53 -113.84 -0.74 -11.10 16 15 C 0.09 1.15 5.86 -2.77 -0.02 1.13 16 16 C -0.15 -2.06 5.15 -27.49 -0.14 -2.20 16 17 C 0.09 1.42 2.98 -68.14 -0.20 1.21 16 18 H 0.03 0.52 7.96 -51.93 -0.41 0.11 16 19 N -0.84 -11.34 5.14 -5.04 -0.03 -11.37 16 20 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 21 H 0.01 0.23 7.11 -51.93 -0.37 -0.14 16 22 H 0.01 0.21 6.83 -51.93 -0.35 -0.14 16 23 H 0.07 1.58 6.44 -51.93 -0.33 1.25 16 24 H 0.06 1.20 6.65 -51.93 -0.35 0.86 16 25 H 0.05 0.89 6.79 -51.93 -0.35 0.53 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.36 5.42 6.19 -39.29 -0.24 5.17 16 28 H 0.06 0.68 7.99 -51.93 -0.41 0.27 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.95 6.66 -51.93 -0.35 0.60 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.34 4.90 8.12 -39.29 -0.32 4.58 16 33 H 0.33 3.71 8.84 -39.29 -0.35 3.36 16 LS Contribution 244.57 15.07 3.69 3.69 Total: -1.00 -29.25 244.57 -7.18 -36.43 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -5.04 Total: 8.33 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -1.16 Total: -15.98 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: 0.00 Total: -49.50 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -29.25 -7.18 -36.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261226353.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.741 kcal (2) G-P(sol) polarization free energy of solvation -29.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds