Wall clock time and date at job start Mon Mar 30 2020 02:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86798 * 120.00447 * 2 1 4 4 H 1.48502 * 109.47219 * 269.99720 * 3 2 1 5 5 H 1.48504 * 109.46931 * 29.99206 * 3 2 1 6 6 H 1.48500 * 109.47508 * 149.99238 * 3 2 1 7 7 C 1.37879 * 119.99880 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99902 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00097 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.47049 * 180.02562 * 9 7 2 11 11 H 1.09004 * 108.97151 * 303.91311 * 10 9 7 12 12 C 1.45877 * 109.04088 * 62.83422 * 10 9 7 13 13 C 1.53983 * 112.66523 * 182.06355 * 12 10 9 14 14 N 1.44224 * 108.20939 * 278.62759 * 13 12 10 15 15 C 1.47938 * 113.69738 * 95.54965 * 14 13 12 16 16 C 1.53917 * 113.23416 * 317.94474 * 15 14 13 17 17 C 1.50530 * 112.94235 * 317.81547 * 16 15 14 18 18 H 1.08999 * 109.57804 * 211.56317 * 17 16 15 19 19 N 1.46898 * 109.57329 * 331.81741 * 17 16 15 20 20 H 0.97000 * 120.00229 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47508 * 59.99960 * 9 7 2 22 22 H 1.09004 * 109.46713 * 300.00042 * 9 7 2 23 23 H 1.09000 * 108.83928 * 302.88040 * 12 10 9 24 24 H 1.08992 * 108.85195 * 61.34427 * 12 10 9 25 25 H 1.09002 * 109.69643 * 38.30955 * 13 12 10 26 26 H 1.08998 * 109.69518 * 158.89477 * 13 12 10 27 27 H 1.00901 * 111.07090 * 329.49774 * 14 13 12 28 28 H 1.08999 * 108.71208 * 197.01730 * 15 14 13 29 29 H 1.09001 * 108.71418 * 78.87958 * 15 14 13 30 30 H 1.08999 * 108.78656 * 78.71375 * 16 15 14 31 31 H 1.09003 * 108.78807 * 196.92544 * 16 15 14 32 32 H 1.00903 * 111.00204 * 177.20325 * 19 17 16 33 33 H 1.00901 * 111.00395 * 301.16007 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4401 0.7002 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 6 4.0213 -2.6366 0.0010 11 1 3.5969 -3.1626 0.8562 12 6 3.5868 -3.2949 -1.2262 13 6 4.0138 -4.7730 -1.2898 14 7 5.3868 -4.8270 -1.7280 15 6 6.3618 -4.9163 -0.6189 16 6 6.0220 -3.9923 0.5642 17 6 5.5613 -2.6269 0.1289 18 1 5.8614 -1.8866 0.8704 19 7 6.1633 -2.2952 -1.1694 20 1 -0.4850 0.8400 -0.0004 21 1 3.8745 -0.6801 0.8911 22 1 3.8751 -0.6805 -0.8889 23 1 2.5001 -3.2393 -1.2896 24 1 4.0161 -2.7690 -2.0789 25 1 3.9250 -5.2239 -0.3015 26 1 3.3799 -5.3083 -1.9967 27 1 5.6035 -4.0534 -2.3385 28 1 7.3483 -4.6501 -0.9983 29 1 6.3915 -5.9456 -0.2615 30 1 5.2337 -4.4564 1.1569 31 1 6.9084 -3.8811 1.1887 32 1 5.8329 -1.4023 -1.5036 33 1 7.1708 -2.3108 -1.1155 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261226353.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:22 Heat of formation + Delta-G solvation = -30.893521 kcal Electronic energy + Delta-G solvation = -13514.818084 eV Core-core repulsion = 11380.703133 eV Total energy + Delta-G solvation = -2134.114950 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.61674 -35.92915 -34.78230 -33.82533 -31.04149 -29.73916 -26.25977 -25.40138 -23.16112 -21.18095 -20.02472 -18.98825 -17.21405 -16.84173 -16.27697 -16.06366 -15.62860 -14.88769 -14.63806 -14.21493 -14.05047 -13.56276 -13.28946 -13.12611 -12.89866 -12.57129 -12.06192 -11.82268 -11.74270 -11.59447 -11.42568 -11.03623 -10.87843 -10.75557 -9.66260 -8.81818 -8.29291 -6.32043 1.31812 1.33874 1.44777 2.33638 3.05440 3.61741 3.82711 3.85978 3.97657 4.23946 4.32359 4.43136 4.53025 4.74544 4.77740 4.91880 5.00577 5.03314 5.12021 5.19944 5.34625 5.38084 5.48403 5.55892 5.67651 5.81180 6.26306 6.31140 6.54720 6.69423 6.75371 6.94989 7.31292 8.87502 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.053357 B = 0.010380 C = 0.009450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.640817 B = 2696.799852 C = 2962.365969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.000 4.000 3 Si 0.952 3.048 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.250 1.250 7 C -0.520 4.520 8 H 0.032 0.968 9 C -0.004 4.004 10 C -0.060 4.060 11 H 0.039 0.961 12 C -0.121 4.121 13 C 0.078 3.922 14 N -0.691 5.691 15 C 0.086 3.914 16 C -0.145 4.145 17 C 0.101 3.899 18 H 0.030 0.970 19 N -0.834 5.834 20 H 0.264 0.736 21 H 0.008 0.992 22 H 0.019 0.981 23 H 0.030 0.970 24 H 0.065 0.935 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.359 0.641 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.342 0.658 33 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.499 -5.078 -1.211 16.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.196 4.196 3 Si 0.776 3.224 4 H -0.191 1.191 5 H -0.213 1.213 6 H -0.174 1.174 7 C -0.558 4.558 8 H 0.050 0.950 9 C -0.041 4.041 10 C -0.079 4.079 11 H 0.058 0.942 12 C -0.160 4.160 13 C -0.052 4.052 14 N -0.325 5.325 15 C -0.044 4.044 16 C -0.184 4.184 17 C -0.010 4.010 18 H 0.048 0.952 19 N -0.366 5.366 20 H 0.073 0.927 21 H 0.027 0.973 22 H 0.037 0.963 23 H 0.048 0.952 24 H 0.084 0.916 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.182 0.818 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.155 0.845 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 14.976 -6.294 -1.553 16.319 hybrid contribution -0.328 2.614 1.097 2.854 sum 14.647 -3.680 -0.456 15.109 Atomic orbital electron populations 1.70075 1.08306 1.27966 1.53076 1.26034 0.95602 1.03494 0.94480 0.85630 0.79275 0.78383 0.79089 1.19079 1.21320 1.17374 1.21465 0.92048 0.92841 1.49485 0.94976 1.19634 0.94034 0.94746 0.95728 1.20014 0.93965 0.96125 0.97815 0.94233 1.20907 0.99683 0.97060 0.98324 1.21508 0.90520 0.93939 0.99282 1.59697 1.01461 1.51643 1.19673 1.21985 0.95813 0.97124 0.89495 1.22009 1.01456 0.95086 0.99896 1.21107 0.93287 0.96218 0.90420 0.95201 1.58814 1.12312 1.38379 1.27117 0.92673 0.97328 0.96260 0.95159 0.91613 0.92915 0.92034 0.81753 0.90370 0.92288 0.93141 0.90570 0.84540 0.83653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.58 13.96 21.45 0.30 -60.28 16 2 C 0.00 0.00 5.47 84.66 0.46 0.47 16 3 Si 0.95 44.58 27.47 68.60 1.88 46.47 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 6 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 7 C -0.52 -30.07 8.86 25.60 0.23 -29.85 16 8 H 0.03 2.07 7.06 -2.91 -0.02 2.04 16 9 C 0.00 -0.19 3.31 29.85 0.10 -0.09 16 10 C -0.06 -2.32 1.60 -12.46 -0.02 -2.34 16 11 H 0.04 1.66 7.59 -2.38 -0.02 1.64 16 12 C -0.12 -4.57 4.27 28.74 0.12 -4.45 16 13 C 0.08 2.49 6.28 87.13 0.55 3.04 16 14 N -0.69 -18.95 6.53 -514.09 -3.36 -22.31 16 15 C 0.09 1.98 5.86 86.41 0.51 2.48 16 16 C -0.14 -3.58 5.15 30.10 0.16 -3.42 16 17 C 0.10 2.93 2.98 44.64 0.13 3.06 16 18 H 0.03 0.89 7.96 -2.39 -0.02 0.88 16 19 N -0.83 -19.82 5.14 -169.85 -0.87 -20.69 16 20 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 21 H 0.01 0.39 7.11 -2.39 -0.02 0.38 16 22 H 0.02 0.85 6.83 -2.38 -0.02 0.83 16 23 H 0.03 1.38 6.44 -2.39 -0.02 1.36 16 24 H 0.07 2.44 6.65 -2.39 -0.02 2.42 16 25 H 0.05 1.69 6.79 -2.39 -0.02 1.68 16 26 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.36 9.85 6.19 -89.69 -0.55 9.29 16 28 H 0.08 1.51 7.99 -2.39 -0.02 1.49 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.05 1.40 6.66 -2.39 -0.02 1.38 16 31 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.34 8.68 8.12 -89.69 -0.73 7.95 16 33 H 0.35 6.32 8.84 -89.69 -0.79 5.53 16 Total: -1.00 -64.48 244.57 -0.83 -65.30 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: -1.01 Total: 22.61 kcal Atomic # 6 Polarization: -33.33 SS G_CDS: 2.23 Total: -31.09 kcal Atomic # 7 Polarization: -99.35 SS G_CDS: -3.93 Total: -103.28 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.88 Total: 46.47 kcal Total: -64.48 -0.83 -65.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261226353.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.408 kcal (2) G-P(sol) polarization free energy of solvation -64.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds