Wall clock time and date at job start Mon Mar 30 2020 02:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00076 * 2 1 4 4 H 1.09004 * 109.46658 * 34.50571 * 3 2 1 5 5 C 1.50695 * 109.47421 * 154.50322 * 3 2 1 6 6 H 1.08004 * 120.00010 * 120.00017 * 5 3 2 7 7 C 1.37872 * 120.00418 * 300.00272 * 5 3 2 8 8 N 1.31517 * 120.00311 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 119.99720 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.47222 * 90.00387 * 9 7 5 11 11 H 1.48503 * 109.47079 * 210.00089 * 9 7 5 12 12 H 1.48499 * 109.47469 * 329.99944 * 9 7 5 13 13 C 1.52996 * 109.47060 * 274.50995 * 3 2 1 14 14 C 1.53006 * 109.46902 * 298.81651 * 13 3 2 15 15 C 1.54263 * 110.48795 * 185.82869 * 14 13 3 16 16 C 1.53874 * 106.64227 * 217.73794 * 15 14 13 17 17 C 1.54268 * 106.59493 * 359.97256 * 16 15 14 18 18 C 1.54889 * 104.19821 * 23.61467 * 17 16 15 19 19 H 1.08996 * 109.46880 * 55.05333 * 1 2 3 20 20 H 1.09003 * 109.46928 * 175.04505 * 1 2 3 21 21 H 1.08992 * 109.47953 * 295.04728 * 1 2 3 22 22 H 0.97003 * 119.99574 * 179.97438 * 8 7 5 23 23 H 1.09005 * 109.47562 * 178.82192 * 13 3 2 24 24 H 1.08999 * 109.47508 * 58.81434 * 13 3 2 25 25 H 1.09001 * 110.53775 * 308.44321 * 14 13 3 26 26 H 1.09001 * 110.03465 * 98.42766 * 15 14 13 27 27 H 1.08998 * 110.03139 * 337.04501 * 15 14 13 28 28 H 1.09001 * 110.03483 * 119.25918 * 16 15 14 29 29 H 1.08998 * 110.03262 * 240.69329 * 16 15 14 30 30 H 1.09001 * 110.48446 * 142.29237 * 17 16 15 31 31 H 1.08997 * 110.48847 * 264.80080 * 17 16 15 32 32 H 1.08998 * 110.75578 * 80.36975 * 18 17 16 33 33 H 1.09001 * 110.75391 * 203.55623 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3843 1.9818 0.5822 5 6 3.3861 1.2428 0.6116 6 1 4.2484 1.5385 0.0325 7 6 3.5441 0.8079 1.9103 8 7 4.7449 0.7527 2.4439 9 14 2.0526 0.2969 2.9121 10 1 1.8004 -1.1538 2.7198 11 1 2.3052 0.5691 4.3500 12 1 0.8664 1.0693 2.4632 13 6 2.1140 1.8174 -1.4380 14 6 3.0164 0.8841 -2.2477 15 6 3.2554 1.4557 -3.6605 16 6 3.2632 0.2571 -4.6254 17 6 3.0293 -1.0022 -3.7655 18 6 2.3085 -0.4708 -2.5017 19 1 -0.3633 0.5886 -0.8423 20 1 -0.3633 -1.0239 -0.0888 21 1 -0.3635 0.4350 0.9309 22 1 4.8559 0.4471 3.3578 23 1 2.5381 2.8216 -1.4365 24 1 1.1213 1.8429 -1.8872 25 1 3.9649 0.7283 -1.7337 26 1 4.2152 1.9710 -3.6974 27 1 2.4524 2.1433 -3.9258 28 1 2.4634 0.3626 -5.3584 29 1 4.2268 0.1906 -5.1304 30 1 2.3958 -1.7136 -4.2953 31 1 3.9799 -1.4642 -3.4991 32 1 1.2468 -0.3206 -2.6971 33 1 2.4529 -1.1491 -1.6608 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261258608.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:11 Heat of formation + Delta-G solvation = -68.201774 kcal Electronic energy + Delta-G solvation = -13515.776653 eV Core-core repulsion = 11347.751145 eV Total energy + Delta-G solvation = -2168.025509 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.24905 -36.38878 -32.64717 -31.21285 -28.09727 -27.59796 -25.44539 -24.34221 -20.53683 -19.83283 -18.94533 -17.05211 -15.36237 -15.30638 -14.79942 -13.99900 -13.86409 -13.34784 -12.94093 -12.81982 -12.42828 -11.72922 -11.59261 -10.87089 -10.77549 -10.63746 -10.50990 -10.31056 -10.06271 -10.01099 -9.92813 -9.74145 -9.42460 -9.00907 -8.56036 -8.25082 -6.08046 -4.14573 3.40819 3.46084 3.51662 4.50471 4.85528 5.19901 5.23776 5.25730 5.59787 5.88454 5.93686 6.00432 6.06815 6.09404 6.14118 6.23717 6.27178 6.31906 6.33734 6.41108 6.54072 6.63277 6.73304 6.80655 6.89334 7.09848 7.16565 7.35614 7.71248 8.45750 8.57403 8.94558 9.55582 11.01900 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.042585 B = 0.012278 C = 0.010985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.356604 B = 2279.980052 C = 2548.374235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.380 6.380 3 C 0.177 3.823 4 H 0.015 0.985 5 C -0.508 4.508 6 H 0.083 0.917 7 C 0.080 3.920 8 N -0.893 5.893 9 Si 0.904 3.096 10 H -0.276 1.276 11 H -0.304 1.304 12 H -0.271 1.271 13 C -0.116 4.116 14 C -0.076 4.076 15 C -0.125 4.125 16 C -0.122 4.122 17 C -0.130 4.130 18 C -0.102 4.102 19 H 0.027 0.973 20 H 0.065 0.935 21 H 0.026 0.974 22 H 0.264 0.736 23 H 0.058 0.942 24 H 0.036 0.964 25 H 0.089 0.911 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.269 -0.836 -9.160 11.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.300 6.300 3 C 0.121 3.879 4 H 0.032 0.968 5 C -0.545 4.545 6 H 0.101 0.899 7 C -0.124 4.124 8 N -0.530 5.530 9 Si 0.735 3.265 10 H -0.202 1.202 11 H -0.232 1.232 12 H -0.197 1.197 13 C -0.154 4.154 14 C -0.094 4.094 15 C -0.162 4.162 16 C -0.159 4.159 17 C -0.167 4.167 18 C -0.139 4.139 19 H 0.046 0.954 20 H 0.083 0.917 21 H 0.044 0.956 22 H 0.074 0.926 23 H 0.077 0.923 24 H 0.055 0.945 25 H 0.107 0.893 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.047 -1.034 -9.025 10.912 hybrid contribution -0.934 -0.059 0.542 1.082 sum -6.981 -1.092 -8.483 11.040 Atomic orbital electron populations 1.22622 0.85912 1.00511 0.98637 1.88210 1.15580 1.32397 1.93779 1.20331 0.94334 0.81376 0.91821 0.96773 1.20995 0.91465 1.44713 0.97313 0.89920 1.25059 0.95974 0.93474 0.97846 1.69939 1.21962 1.46154 1.14995 0.86467 0.83101 0.79798 0.77169 1.20159 1.23231 1.19663 1.21918 0.97266 0.98606 0.97588 1.21872 1.00280 0.94320 0.92968 1.22288 1.00664 0.97131 0.96164 1.22106 1.00319 0.95729 0.97786 1.22432 1.00378 0.96674 0.97238 1.22463 0.97681 0.97467 0.96335 0.95405 0.91681 0.95555 0.92598 0.92344 0.94496 0.89315 0.92626 0.92787 0.92865 0.92781 0.92896 0.92066 0.93095 0.90138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.36 101.05 1.05 1.43 16 2 O -0.38 -8.74 5.56 -35.23 -0.20 -8.94 16 3 C 0.18 4.20 1.73 -27.89 -0.05 4.15 16 4 H 0.01 0.35 6.94 -51.93 -0.36 -0.01 16 5 C -0.51 -14.19 8.54 -34.44 -0.29 -14.49 16 6 H 0.08 2.46 6.94 -52.48 -0.36 2.09 16 7 C 0.08 2.34 5.47 -17.82 -0.10 2.24 16 8 N -0.89 -27.28 13.96 55.43 0.77 -26.51 16 9 Si 0.90 23.03 25.62 -169.99 -4.36 18.67 16 10 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 12 H -0.27 -6.58 5.43 56.52 0.31 -6.27 16 13 C -0.12 -2.35 4.53 -26.73 -0.12 -2.47 16 14 C -0.08 -1.47 2.67 -88.92 -0.24 -1.71 16 15 C -0.12 -2.00 6.37 -25.61 -0.16 -2.17 16 16 C -0.12 -1.75 6.80 -25.61 -0.17 -1.92 16 17 C -0.13 -2.00 6.83 -25.07 -0.17 -2.17 16 18 C -0.10 -1.85 4.95 -24.70 -0.12 -1.97 16 19 H 0.03 0.47 7.42 -51.93 -0.39 0.08 16 20 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 21 H 0.03 0.50 6.76 -51.93 -0.35 0.15 16 22 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 23 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 24 H 0.04 0.68 7.32 -51.93 -0.38 0.30 16 25 H 0.09 1.99 6.40 -51.93 -0.33 1.66 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.82 7.84 -51.93 -0.41 0.41 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.89 7.95 -51.93 -0.41 0.47 16 33 H 0.08 1.65 7.01 -51.93 -0.36 1.29 16 LS Contribution 252.92 15.07 3.81 3.81 Total: -1.00 -29.41 252.92 -5.89 -35.30 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -5.55 Total: -3.28 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -0.38 Total: -19.06 kcal Atomic # 7 Polarization: -27.28 SS G_CDS: 0.77 Total: -26.51 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.20 Total: -8.94 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -4.36 Total: 18.67 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.41 -5.89 -35.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261258608.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.901 kcal (2) G-P(sol) polarization free energy of solvation -29.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds