Wall clock time and date at job start Mon Mar 30 2020 02:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00076 * 2 1 4 4 H 1.09004 * 109.46658 * 34.50571 * 3 2 1 5 5 C 1.50695 * 109.47421 * 154.50322 * 3 2 1 6 6 H 1.08004 * 120.00010 * 120.00017 * 5 3 2 7 7 C 1.37872 * 120.00418 * 300.00272 * 5 3 2 8 8 N 1.31517 * 120.00311 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 119.99720 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.47222 * 90.00387 * 9 7 5 11 11 H 1.48503 * 109.47079 * 210.00089 * 9 7 5 12 12 H 1.48499 * 109.47469 * 329.99944 * 9 7 5 13 13 C 1.52996 * 109.47060 * 274.50995 * 3 2 1 14 14 C 1.53006 * 109.46902 * 298.81651 * 13 3 2 15 15 C 1.54263 * 110.48795 * 185.82869 * 14 13 3 16 16 C 1.53874 * 106.64227 * 217.73794 * 15 14 13 17 17 C 1.54268 * 106.59493 * 359.97256 * 16 15 14 18 18 C 1.54889 * 104.19821 * 23.61467 * 17 16 15 19 19 H 1.08996 * 109.46880 * 55.05333 * 1 2 3 20 20 H 1.09003 * 109.46928 * 175.04505 * 1 2 3 21 21 H 1.08992 * 109.47953 * 295.04728 * 1 2 3 22 22 H 0.97003 * 119.99574 * 179.97438 * 8 7 5 23 23 H 1.09005 * 109.47562 * 178.82192 * 13 3 2 24 24 H 1.08999 * 109.47508 * 58.81434 * 13 3 2 25 25 H 1.09001 * 110.53775 * 308.44321 * 14 13 3 26 26 H 1.09001 * 110.03465 * 98.42766 * 15 14 13 27 27 H 1.08998 * 110.03139 * 337.04501 * 15 14 13 28 28 H 1.09001 * 110.03483 * 119.25918 * 16 15 14 29 29 H 1.08998 * 110.03262 * 240.69329 * 16 15 14 30 30 H 1.09001 * 110.48446 * 142.29237 * 17 16 15 31 31 H 1.08997 * 110.48847 * 264.80080 * 17 16 15 32 32 H 1.08998 * 110.75578 * 80.36975 * 18 17 16 33 33 H 1.09001 * 110.75391 * 203.55623 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3843 1.9818 0.5822 5 6 3.3861 1.2428 0.6116 6 1 4.2484 1.5385 0.0325 7 6 3.5441 0.8079 1.9103 8 7 4.7449 0.7527 2.4439 9 14 2.0526 0.2969 2.9121 10 1 1.8004 -1.1538 2.7198 11 1 2.3052 0.5691 4.3500 12 1 0.8664 1.0693 2.4632 13 6 2.1140 1.8174 -1.4380 14 6 3.0164 0.8841 -2.2477 15 6 3.2554 1.4557 -3.6605 16 6 3.2632 0.2571 -4.6254 17 6 3.0293 -1.0022 -3.7655 18 6 2.3085 -0.4708 -2.5017 19 1 -0.3633 0.5886 -0.8423 20 1 -0.3633 -1.0239 -0.0888 21 1 -0.3635 0.4350 0.9309 22 1 4.8559 0.4471 3.3578 23 1 2.5381 2.8216 -1.4365 24 1 1.1213 1.8429 -1.8872 25 1 3.9649 0.7283 -1.7337 26 1 4.2152 1.9710 -3.6974 27 1 2.4524 2.1433 -3.9258 28 1 2.4634 0.3626 -5.3584 29 1 4.2268 0.1906 -5.1304 30 1 2.3958 -1.7136 -4.2953 31 1 3.9799 -1.4642 -3.4991 32 1 1.2468 -0.3206 -2.6971 33 1 2.4529 -1.1491 -1.6608 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261258608.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:11 Heat of formation + Delta-G solvation = -86.088380 kcal Electronic energy + Delta-G solvation = -13516.552275 eV Core-core repulsion = 11347.751145 eV Total energy + Delta-G solvation = -2168.801130 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.81799 -37.95428 -34.74272 -32.90952 -29.48230 -29.24314 -27.00475 -26.17320 -22.25383 -21.12553 -20.53499 -19.08596 -17.11113 -16.81904 -16.58708 -15.55259 -15.38239 -15.10084 -14.85075 -14.16890 -13.97840 -13.43785 -13.14576 -12.85425 -12.36325 -12.22672 -12.02198 -11.77973 -11.67784 -11.54450 -11.44255 -11.23532 -11.05421 -10.95492 -10.70760 -9.97840 -8.30936 -6.40784 1.34540 1.41585 1.48918 2.38260 2.87873 3.69507 3.87324 3.94595 3.98488 4.40342 4.53690 4.58198 4.66541 4.71241 4.76782 4.83889 4.89615 4.92010 4.96946 5.01802 5.11419 5.15839 5.25049 5.36815 5.48690 5.56089 5.60711 5.72881 5.83874 6.30162 6.62955 6.87526 7.32631 8.82654 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.042585 B = 0.012278 C = 0.010985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.356604 B = 2279.980052 C = 2548.374235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.398 6.398 3 C 0.181 3.819 4 H 0.013 0.987 5 C -0.510 4.510 6 H 0.047 0.953 7 C 0.023 3.977 8 N -0.941 5.941 9 Si 0.962 3.038 10 H -0.276 1.276 11 H -0.303 1.303 12 H -0.249 1.249 13 C -0.111 4.111 14 C -0.080 4.080 15 C -0.120 4.120 16 C -0.116 4.116 17 C -0.127 4.127 18 C -0.098 4.098 19 H 0.052 0.948 20 H 0.090 0.910 21 H 0.024 0.976 22 H 0.266 0.734 23 H 0.055 0.945 24 H 0.065 0.935 25 H 0.042 0.958 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.741 -1.041 -10.810 13.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.318 6.318 3 C 0.125 3.875 4 H 0.031 0.969 5 C -0.547 4.547 6 H 0.065 0.935 7 C -0.176 4.176 8 N -0.582 5.582 9 Si 0.790 3.210 10 H -0.202 1.202 11 H -0.231 1.231 12 H -0.174 1.174 13 C -0.149 4.149 14 C -0.099 4.099 15 C -0.158 4.158 16 C -0.154 4.154 17 C -0.165 4.165 18 C -0.135 4.135 19 H 0.070 0.930 20 H 0.108 0.892 21 H 0.043 0.957 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.084 0.916 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.535 -1.230 -10.692 13.736 hybrid contribution -0.153 0.005 1.014 1.025 sum -8.688 -1.225 -9.679 13.063 Atomic orbital electron populations 1.22890 0.83195 1.02722 0.99605 1.88118 1.18397 1.31269 1.94021 1.20127 0.91878 0.81825 0.93681 0.96942 1.21266 0.92873 1.43471 0.97138 0.93525 1.25897 0.98573 0.93918 0.99237 1.70069 1.24161 1.48389 1.15531 0.85547 0.80454 0.79418 0.75629 1.20214 1.23112 1.17373 1.21854 0.98974 0.98385 0.95679 1.21779 0.98085 0.95476 0.94532 1.22239 1.01172 0.98154 0.94242 1.22092 1.01951 0.93839 0.97486 1.22415 0.99995 0.97734 0.96330 1.22364 0.98601 0.96027 0.96554 0.92990 0.89190 0.95705 0.92555 0.92651 0.91648 0.93922 0.92910 0.91134 0.90492 0.91658 0.90561 0.93134 0.91694 0.93331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.43 10.36 113.37 1.17 1.60 16 2 O -0.40 -17.66 5.56 -148.98 -0.83 -18.48 16 3 C 0.18 8.47 1.73 29.84 0.05 8.52 16 4 H 0.01 0.61 6.94 -2.39 -0.02 0.59 16 5 C -0.51 -29.38 8.54 25.60 0.22 -29.16 16 6 H 0.05 2.94 6.94 -2.91 -0.02 2.92 16 7 C 0.02 1.35 5.47 84.65 0.46 1.81 16 8 N -0.94 -59.70 13.96 21.45 0.30 -59.40 16 9 Si 0.96 47.54 25.62 68.60 1.76 49.30 16 10 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 11 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 12 H -0.25 -11.30 5.43 99.48 0.54 -10.76 16 13 C -0.11 -4.35 4.53 30.59 0.14 -4.21 16 14 C -0.08 -3.06 2.67 -9.69 -0.03 -3.08 16 15 C -0.12 -3.61 6.37 31.32 0.20 -3.41 16 16 C -0.12 -2.95 6.80 31.32 0.21 -2.74 16 17 C -0.13 -3.62 6.83 31.67 0.22 -3.41 16 18 C -0.10 -3.40 4.95 31.91 0.16 -3.24 16 19 H 0.05 1.52 7.42 -2.39 -0.02 1.51 16 20 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 21 H 0.02 0.85 6.76 -2.39 -0.02 0.84 16 22 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 23 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 24 H 0.06 2.18 7.32 -2.39 -0.02 2.17 16 25 H 0.04 2.00 6.40 -2.39 -0.02 1.99 16 26 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.07 1.89 7.84 -2.39 -0.02 1.87 16 28 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.06 2.05 7.95 -2.39 -0.02 2.03 16 33 H 0.05 1.98 7.01 -2.39 -0.02 1.96 16 Total: -1.00 -64.87 252.92 4.93 -59.95 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: 0.89 Total: 5.97 kcal Atomic # 6 Polarization: -40.13 SS G_CDS: 2.81 Total: -37.33 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: 0.30 Total: -59.40 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.83 Total: -18.48 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 1.76 Total: 49.30 kcal Total: -64.87 4.93 -59.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261258608.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.143 kcal (2) G-P(sol) polarization free energy of solvation -64.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds