Wall clock time and date at job start Mon Mar 30 2020 02:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42906 * 113.99738 * 2 1 4 4 H 1.09000 * 109.47385 * 345.83899 * 3 2 1 5 5 C 1.50696 * 109.46960 * 225.83697 * 3 2 1 6 6 H 1.08004 * 120.00265 * 245.26814 * 5 3 2 7 7 C 1.37877 * 120.00290 * 65.27327 * 5 3 2 8 8 N 1.31520 * 119.99405 * 8.29992 * 7 5 3 9 9 Si 1.86801 * 120.00395 * 188.30152 * 7 5 3 10 10 H 1.48501 * 109.46910 * 59.99781 * 9 7 5 11 11 H 1.48494 * 109.47286 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47178 * 299.99947 * 9 7 5 13 13 C 1.53008 * 109.47047 * 105.83959 * 3 2 1 14 14 C 1.53002 * 109.46764 * 295.10490 * 13 3 2 15 15 C 1.54272 * 110.03267 * 291.16684 * 14 13 3 16 16 C 1.54889 * 104.19741 * 217.11035 * 15 14 13 17 17 C 1.54887 * 102.74689 * 37.94000 * 16 15 14 18 18 C 1.53873 * 110.02756 * 174.00367 * 14 13 3 19 19 H 1.09002 * 109.47065 * 63.11415 * 1 2 3 20 20 H 1.08999 * 109.46719 * 183.11259 * 1 2 3 21 21 H 1.09001 * 109.47729 * 303.10815 * 1 2 3 22 22 H 0.97005 * 119.99110 * 180.02562 * 8 7 5 23 23 H 1.08999 * 109.46786 * 175.10570 * 13 3 2 24 24 H 1.08992 * 109.47083 * 55.10621 * 13 3 2 25 25 H 1.08994 * 110.06055 * 52.58604 * 14 13 3 26 26 H 1.08999 * 110.48564 * 335.78916 * 15 14 13 27 27 H 1.08998 * 110.48663 * 98.43094 * 15 14 13 28 28 H 1.08998 * 110.75306 * 279.63116 * 16 15 14 29 29 H 1.08993 * 110.91534 * 156.33026 * 16 15 14 30 30 H 1.09006 * 110.48841 * 203.37835 * 17 16 15 31 31 H 1.09005 * 110.59721 * 80.79710 * 17 16 15 32 32 H 1.09008 * 110.03274 * 238.56502 * 18 14 13 33 33 H 1.08994 * 110.03635 * 359.94812 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.2476 2.0427 -0.2514 5 6 3.1187 1.3618 -1.0192 6 1 4.1398 1.5082 -0.6991 7 6 2.8296 1.2266 -2.3605 8 7 1.5783 1.2126 -2.7652 9 14 4.2150 1.0634 -3.6029 10 1 5.0237 -0.1413 -3.2870 11 1 3.6435 0.9317 -4.9672 12 1 5.0791 2.2696 -3.5421 13 6 2.5773 1.6113 1.3878 14 6 1.4344 1.6745 2.4031 15 6 0.5593 2.9169 2.1371 16 6 0.1616 3.4110 3.5502 17 6 1.4502 3.1647 4.3736 18 6 2.0009 1.8321 3.8251 19 1 -0.3633 0.4647 -0.9166 20 1 -0.3633 -1.0262 0.0558 21 1 -0.3634 0.5613 0.8608 22 1 1.3749 1.1171 -3.7089 23 1 3.0965 2.5694 1.3650 24 1 3.2761 0.8261 1.6758 25 1 0.8284 0.7707 2.3407 26 1 1.1321 3.6817 1.6127 27 1 -0.3273 2.6436 1.5650 28 1 -0.6674 2.8240 3.9455 29 1 -0.0904 4.4713 3.5350 30 1 1.2138 3.0723 5.4337 31 1 2.1678 3.9692 4.2125 32 1 1.6698 1.0047 4.4528 33 1 3.0899 1.8627 3.7919 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261258609.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:12 Heat of formation + Delta-G solvation = -94.523754 kcal Electronic energy + Delta-G solvation = -13272.736100 eV Core-core repulsion = 11103.569185 eV Total energy + Delta-G solvation = -2169.166915 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.75987 -37.80153 -34.61505 -32.72124 -29.57778 -29.35046 -26.83874 -25.81622 -22.63075 -21.34793 -20.40898 -18.60743 -17.18885 -16.69016 -16.39720 -15.90956 -15.32666 -15.06590 -14.41909 -14.14242 -13.87384 -13.19639 -12.95715 -12.85738 -12.75325 -12.21941 -11.97891 -11.90102 -11.72527 -11.68951 -11.44141 -11.42272 -11.14737 -11.01523 -10.50430 -9.73040 -8.19762 -6.33782 1.38678 1.42562 1.49642 2.39943 3.02247 3.75557 3.84234 3.87081 3.93493 4.48795 4.54644 4.60416 4.62513 4.73179 4.80389 4.82359 4.87327 4.99737 5.00765 5.06858 5.09575 5.19811 5.24381 5.33988 5.47691 5.51614 5.55393 5.63792 5.77942 6.25315 6.75013 7.12403 7.39125 8.88811 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.050143 B = 0.009486 C = 0.008878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.264061 B = 2951.111714 C = 3152.930599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.413 6.413 3 C 0.214 3.786 4 H 0.002 0.998 5 C -0.560 4.560 6 H 0.056 0.944 7 C 0.026 3.974 8 N -0.904 5.904 9 Si 0.958 3.042 10 H -0.274 1.274 11 H -0.280 1.280 12 H -0.265 1.265 13 C -0.109 4.109 14 C -0.092 4.092 15 C -0.121 4.121 16 C -0.117 4.117 17 C -0.118 4.118 18 C -0.118 4.118 19 H 0.017 0.983 20 H 0.074 0.926 21 H 0.038 0.962 22 H 0.263 0.737 23 H 0.055 0.945 24 H 0.044 0.956 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.194 2.931 10.870 11.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.333 6.333 3 C 0.159 3.841 4 H 0.020 0.980 5 C -0.597 4.597 6 H 0.074 0.926 7 C -0.176 4.176 8 N -0.542 5.542 9 Si 0.782 3.218 10 H -0.199 1.199 11 H -0.205 1.205 12 H -0.190 1.190 13 C -0.146 4.146 14 C -0.111 4.111 15 C -0.158 4.158 16 C -0.155 4.155 17 C -0.155 4.155 18 C -0.156 4.156 19 H 0.036 0.964 20 H 0.093 0.907 21 H 0.056 0.944 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.193 2.759 10.730 11.294 hybrid contribution 0.390 -0.062 -1.166 1.231 sum -1.804 2.697 9.563 10.099 Atomic orbital electron populations 1.22562 0.83431 1.00812 0.98506 1.87888 1.18275 1.32242 1.94853 1.19617 0.91912 0.81145 0.91464 0.97975 1.21692 0.94472 1.51216 0.92293 0.92581 1.25858 0.97924 0.93296 1.00474 1.70057 1.19443 1.48631 1.16089 0.85637 0.79448 0.79007 0.77659 1.19894 1.20531 1.19027 1.21988 0.97466 0.99788 0.95396 1.21804 0.96232 0.98039 0.95016 1.22431 0.98519 0.96981 0.97895 1.22480 0.97948 1.01233 0.93824 1.22339 0.96817 0.96622 0.99754 1.22213 1.00264 0.98511 0.94591 0.96404 0.90703 0.94382 0.92780 0.92610 0.93729 0.92283 0.92964 0.93317 0.90894 0.90672 0.89986 0.91711 0.91317 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.97 10.31 113.37 1.17 3.14 16 2 O -0.41 -22.16 9.88 -148.98 -1.47 -23.63 16 3 C 0.21 11.39 1.92 29.85 0.06 11.44 16 4 H 0.00 0.14 6.89 -2.39 -0.02 0.12 16 5 C -0.56 -32.63 8.75 25.60 0.22 -32.40 16 6 H 0.06 3.19 7.76 -2.91 -0.02 3.17 16 7 C 0.03 1.51 5.40 84.65 0.46 1.96 16 8 N -0.90 -54.00 13.22 21.45 0.28 -53.72 16 9 Si 0.96 44.88 29.55 68.60 2.03 46.91 16 10 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 13 C -0.11 -4.74 3.99 30.60 0.12 -4.62 16 14 C -0.09 -3.27 2.44 -10.07 -0.02 -3.30 16 15 C -0.12 -3.98 5.44 31.67 0.17 -3.80 16 16 C -0.12 -2.88 6.91 31.88 0.22 -2.66 16 17 C -0.12 -2.72 6.83 31.67 0.22 -2.50 16 18 C -0.12 -3.30 6.46 31.32 0.20 -3.10 16 19 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 20 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 21 H 0.04 1.52 5.54 -2.39 -0.01 1.50 16 22 H 0.26 14.87 8.31 -92.70 -0.77 14.10 16 23 H 0.06 2.39 7.98 -2.39 -0.02 2.37 16 24 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.06 2.21 6.05 -2.39 -0.01 2.20 16 26 H 0.05 1.86 7.74 -2.39 -0.02 1.84 16 27 H 0.05 1.68 7.42 -2.39 -0.02 1.66 16 28 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 30 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.07 1.73 8.14 -2.38 -0.02 1.72 16 33 H 0.06 1.70 7.67 -2.39 -0.02 1.68 16 Total: -1.00 -63.86 262.91 4.71 -59.15 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: 1.05 Total: 7.12 kcal Atomic # 6 Polarization: -38.65 SS G_CDS: 2.82 Total: -35.83 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: 0.28 Total: -53.72 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -1.47 Total: -23.63 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -63.86 4.71 -59.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261258609.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.373 kcal (2) G-P(sol) polarization free energy of solvation -63.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds