Wall clock time and date at job start Mon Mar 30 2020 02:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47078 * 2 1 4 4 H 1.08003 * 120.00271 * 120.00264 * 3 2 1 5 5 C 1.37879 * 120.00161 * 299.99763 * 3 2 1 6 6 N 1.31509 * 119.99895 * 0.02562 * 5 3 2 7 7 Si 1.86803 * 120.00268 * 179.97438 * 5 3 2 8 8 H 1.48498 * 109.46680 * 60.00301 * 7 5 3 9 9 H 1.48492 * 109.47298 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.46944 * 300.00817 * 7 5 3 11 11 C 1.53006 * 109.47127 * 240.00337 * 2 1 3 12 12 O 1.42900 * 109.46976 * 179.97438 * 11 2 1 13 13 C 1.52992 * 109.47482 * 119.99990 * 2 1 3 14 14 C 1.54895 * 110.75649 * 56.06608 * 13 2 1 15 15 C 1.54467 * 104.10050 * 203.89669 * 14 13 2 16 16 C 1.53871 * 106.68648 * 23.34079 * 15 14 13 17 17 C 1.54263 * 106.59865 * 0.15897 * 16 15 14 18 18 H 1.09002 * 109.47153 * 299.99793 * 1 2 3 19 19 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.47261 * 59.99965 * 1 2 3 21 21 H 0.97006 * 120.00358 * 179.97438 * 6 5 3 22 22 H 1.09001 * 109.47002 * 299.99574 * 11 2 1 23 23 H 1.08993 * 109.46955 * 60.00011 * 11 2 1 24 24 H 0.96700 * 113.99855 * 179.97438 * 12 11 2 25 25 H 1.09005 * 110.67795 * 179.29544 * 13 2 1 26 26 H 1.09006 * 110.48312 * 322.42087 * 14 13 2 27 27 H 1.08998 * 110.48861 * 85.06215 * 14 13 2 28 28 H 1.09000 * 109.85709 * 264.09744 * 15 14 13 29 29 H 1.09005 * 110.16318 * 142.75009 * 15 14 13 30 30 H 1.09004 * 110.03180 * 240.87330 * 16 15 14 31 31 H 1.08998 * 110.07315 * 119.46411 * 16 15 14 32 32 H 1.09002 * 110.48806 * 217.71322 * 17 16 15 33 33 H 1.08995 * 110.48906 * 95.06899 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 1 2.6533 1.7741 0.8100 5 6 1.6993 2.2698 -1.0341 6 7 0.9428 1.8398 -2.0202 7 14 2.3213 4.0312 -1.0338 8 1 3.8063 4.0316 -1.0334 9 1 1.8260 4.7313 -2.2460 10 1 1.8258 4.7309 0.1788 11 6 2.0400 -0.7212 -1.2493 12 8 3.4690 -0.7207 -1.2496 13 6 2.0400 -0.7212 1.2491 14 6 1.4608 -2.1555 1.3299 15 6 1.5278 -2.5043 2.8332 16 6 1.5481 -1.1683 3.5963 17 6 1.4886 -0.0524 2.5328 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5139 -0.8900 21 1 0.7082 2.4372 -2.7476 22 1 1.6767 -1.7489 -1.2493 23 1 1.6767 -0.2073 -2.1392 24 1 3.8623 -1.1626 -2.0145 25 1 3.1298 -0.7435 1.2627 26 1 0.4277 -2.1698 0.9822 27 1 2.0700 -2.8464 0.7472 28 1 2.4372 -3.0676 3.0424 29 1 0.6532 -3.0867 3.1232 30 1 2.4674 -1.0832 4.1758 31 1 0.6833 -1.1013 4.2564 32 1 2.1182 0.7878 2.8257 33 1 0.4603 0.2752 2.3806 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261258950.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:52 Heat of formation + Delta-G solvation = -87.243856 kcal Electronic energy + Delta-G solvation = -13718.706139 eV Core-core repulsion = 11549.854904 eV Total energy + Delta-G solvation = -2168.851235 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.96753 -37.16947 -35.29324 -32.78941 -29.52058 -28.05255 -27.20800 -26.29904 -22.52266 -20.92113 -19.48155 -17.91844 -17.65696 -16.96986 -16.40060 -15.72088 -14.94397 -14.70185 -14.36522 -14.04512 -13.37644 -13.10541 -12.78302 -12.68973 -12.36917 -12.23155 -12.08036 -11.89140 -11.78807 -11.60960 -11.05750 -10.91812 -10.85587 -10.48817 -10.32953 -10.12553 -7.92908 -6.04067 1.41884 1.43042 1.49492 2.49455 3.29709 3.92953 3.99215 4.05928 4.07277 4.64001 4.70801 4.75074 4.87608 4.95658 4.97322 5.00519 5.08838 5.13467 5.23706 5.32208 5.38315 5.41708 5.53706 5.60400 5.65395 5.70215 5.78896 6.09165 6.32998 6.55936 6.94725 7.32563 7.60377 9.05044 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.040398 B = 0.013078 C = 0.011700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.929201 B = 2140.477267 C = 2392.502612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.069 3.931 3 C -0.491 4.491 4 H 0.036 0.964 5 C 0.019 3.981 6 N -0.912 5.912 7 Si 0.937 3.063 8 H -0.283 1.283 9 H -0.285 1.285 10 H -0.276 1.276 11 C 0.092 3.908 12 O -0.581 6.581 13 C -0.068 4.068 14 C -0.123 4.123 15 C -0.116 4.116 16 C -0.120 4.120 17 C -0.114 4.114 18 H 0.035 0.965 19 H 0.035 0.965 20 H 0.055 0.945 21 H 0.255 0.745 22 H 0.015 0.985 23 H 0.046 0.954 24 H 0.369 0.631 25 H 0.040 0.960 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.040 0.960 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.076 -6.847 5.412 8.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.068 3.932 3 C -0.529 4.529 4 H 0.055 0.945 5 C -0.178 4.178 6 N -0.552 5.552 7 Si 0.765 3.235 8 H -0.209 1.209 9 H -0.211 1.211 10 H -0.201 1.201 11 C 0.014 3.986 12 O -0.385 6.385 13 C -0.086 4.086 14 C -0.160 4.160 15 C -0.154 4.154 16 C -0.158 4.158 17 C -0.151 4.151 18 H 0.054 0.946 19 H 0.054 0.946 20 H 0.074 0.926 21 H 0.065 0.935 22 H 0.033 0.967 23 H 0.064 0.936 24 H 0.214 0.786 25 H 0.059 0.941 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.059 0.941 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.260 -6.444 5.824 8.690 hybrid contribution 0.501 0.950 -0.944 1.429 sum 0.241 -5.494 4.881 7.353 Atomic orbital electron populations 1.21746 0.97239 0.98191 1.01100 1.18125 0.92139 0.92846 0.90047 1.21205 1.29299 0.96609 1.05791 0.94531 1.25443 0.95680 1.01080 0.95602 1.69880 1.38345 1.35971 1.11050 0.85942 0.78367 0.82010 0.77193 1.20883 1.21089 1.20114 1.22281 0.79217 0.95302 1.01787 1.86517 1.21637 1.81731 1.48614 1.21912 0.97658 0.94130 0.94928 1.22543 1.00684 0.96125 0.96658 1.22131 1.01955 0.97039 0.94275 1.22145 1.01701 0.94490 0.97431 1.22344 1.00503 0.97237 0.95026 0.94591 0.94607 0.92621 0.93513 0.96659 0.93551 0.78629 0.94108 0.91654 0.92797 0.91678 0.90761 0.91961 0.91061 0.94088 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.84 7.61 71.98 0.55 -5.29 16 2 C 0.07 3.33 0.16 -52.93 -0.01 3.32 16 3 C -0.49 -27.05 7.16 25.60 0.18 -26.87 16 4 H 0.04 2.08 7.34 -2.91 -0.02 2.06 16 5 C 0.02 1.06 5.15 84.66 0.44 1.50 16 6 N -0.91 -51.06 9.35 21.45 0.20 -50.86 16 7 Si 0.94 44.82 29.54 68.60 2.03 46.84 16 8 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 9 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 11 C 0.09 4.35 5.52 71.98 0.40 4.75 16 12 O -0.58 -26.68 12.64 -148.98 -1.88 -28.56 16 13 C -0.07 -2.86 2.03 -9.50 -0.02 -2.88 16 14 C -0.12 -4.25 5.27 31.74 0.17 -4.08 16 15 C -0.12 -3.28 6.81 31.39 0.21 -3.07 16 16 C -0.12 -3.56 6.80 31.32 0.21 -3.35 16 17 C -0.11 -4.36 5.54 31.67 0.18 -4.19 16 18 H 0.04 1.63 6.09 -2.39 -0.01 1.61 16 19 H 0.04 1.46 6.05 -2.39 -0.01 1.45 16 20 H 0.05 2.89 6.07 -2.38 -0.01 2.87 16 21 H 0.26 13.88 8.31 -92.70 -0.77 13.11 16 22 H 0.02 0.66 7.31 -2.39 -0.02 0.64 16 23 H 0.05 2.46 6.07 -2.39 -0.01 2.44 16 24 H 0.37 12.97 9.12 -74.06 -0.68 12.29 16 25 H 0.04 1.89 7.73 -2.38 -0.02 1.87 16 26 H 0.06 2.26 5.69 -2.38 -0.01 2.25 16 27 H 0.05 1.83 8.00 -2.39 -0.02 1.81 16 28 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 30 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.07 1.84 8.14 -2.39 -0.02 1.83 16 32 H 0.04 1.66 7.87 -2.39 -0.02 1.64 16 33 H 0.06 2.38 5.76 -2.39 -0.01 2.36 16 Total: -1.00 -60.15 248.87 3.07 -57.08 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.42 Total: 15.65 kcal Atomic # 6 Polarization: -42.46 SS G_CDS: 2.31 Total: -40.15 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: 0.20 Total: -50.86 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -1.88 Total: -28.56 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -60.15 3.07 -57.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261258950.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.165 kcal (2) G-P(sol) polarization free energy of solvation -60.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds