Wall clock time and date at job start Mon Mar 30 2020 02:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50706 * 109.47161 * 2 1 4 4 H 1.07999 * 120.00196 * 240.00130 * 3 2 1 5 5 C 1.37879 * 119.99394 * 60.00262 * 3 2 1 6 6 N 1.31514 * 120.00338 * 0.02562 * 5 3 2 7 7 Si 1.86800 * 119.99424 * 180.02562 * 5 3 2 8 8 H 1.48501 * 109.47363 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47233 * 120.00158 * 7 5 3 10 10 H 1.48508 * 109.46883 * 239.99963 * 7 5 3 11 11 C 1.52997 * 109.47482 * 120.00386 * 2 1 3 12 12 O 1.42898 * 109.47319 * 180.02562 * 11 2 1 13 13 C 1.52999 * 109.46961 * 240.00747 * 2 1 3 14 14 C 1.54885 * 110.75774 * 173.32855 * 13 2 1 15 15 C 1.54267 * 104.19594 * 203.73918 * 14 13 2 16 16 C 1.53874 * 106.60047 * 23.61012 * 15 14 13 17 17 C 1.54272 * 106.59635 * 359.97438 * 16 15 14 18 18 H 1.09001 * 109.47066 * 299.99783 * 1 2 3 19 19 H 1.08996 * 109.47747 * 59.99449 * 1 2 3 20 20 H 1.09002 * 109.47103 * 179.97438 * 1 2 3 21 21 H 0.96996 * 119.99730 * 179.97438 * 6 5 3 22 22 H 1.09002 * 109.47153 * 59.99783 * 11 2 1 23 23 H 1.09001 * 109.46832 * 299.99974 * 11 2 1 24 24 H 0.96701 * 113.99881 * 180.02562 * 12 11 2 25 25 H 1.09008 * 110.67026 * 296.76238 * 13 2 1 26 26 H 1.08998 * 110.48698 * 322.41655 * 14 13 2 27 27 H 1.09001 * 110.49052 * 85.06277 * 14 13 2 28 28 H 1.09001 * 110.03138 * 264.31815 * 15 14 13 29 29 H 1.09001 * 110.07251 * 142.91730 * 15 14 13 30 30 H 1.08996 * 110.02814 * 240.71715 * 16 15 14 31 31 H 1.08998 * 110.03331 * 119.28384 * 16 15 14 32 32 H 1.08992 * 110.48524 * 217.71051 * 17 16 15 33 33 H 1.09001 * 110.48219 * 95.07163 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 1 2.6532 1.7741 -0.8100 5 6 1.6992 2.2697 1.0342 6 7 0.9435 1.8394 2.0208 7 14 2.3213 4.0311 1.0338 8 1 3.1463 4.2645 -0.1786 9 1 1.1660 4.9641 1.0342 10 1 3.1466 4.2648 2.2461 11 6 2.0400 -0.7213 1.2491 12 8 3.4690 -0.7208 1.2494 13 6 2.0399 -0.7211 -1.2493 14 6 3.5791 -0.5944 -1.3664 15 6 3.8614 -0.7896 -2.8704 16 6 2.5650 -0.4207 -3.6126 17 6 1.5398 -0.0148 -2.5336 18 1 -0.3633 0.5138 0.8900 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 0.7095 2.4365 2.7485 22 1 1.6767 -1.7490 1.2491 23 1 1.6767 -0.2075 2.1392 24 1 3.8623 -1.1628 2.0142 25 1 1.7351 -1.7677 -1.2409 26 1 3.9064 0.3934 -1.0420 27 1 4.0715 -1.3716 -0.7819 28 1 4.1229 -1.8290 -3.0694 29 1 4.6725 -0.1338 -3.1870 30 1 2.1972 -1.2811 -4.1717 31 1 2.7466 0.4147 -4.2888 32 1 0.5442 -0.3686 -2.8011 33 1 1.5375 1.0666 -2.3973 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261258953.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:53 Heat of formation + Delta-G solvation = -70.286147 kcal Electronic energy + Delta-G solvation = -13839.577007 eV Core-core repulsion = 11671.461113 eV Total energy + Delta-G solvation = -2168.115894 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.18684 -35.34659 -33.40588 -30.89006 -27.80866 -26.59365 -25.02728 -24.38081 -20.22571 -19.30828 -18.56147 -15.90504 -15.63198 -15.08249 -14.64042 -13.87747 -13.06842 -12.84716 -12.39311 -12.06498 -11.82704 -11.18356 -10.93176 -10.88131 -10.62448 -10.49767 -10.32842 -10.08090 -10.01589 -9.74556 -9.57048 -9.22906 -8.96012 -8.52278 -8.38909 -8.15275 -5.86022 -3.89986 3.35194 3.43374 3.47884 4.52338 5.39814 5.53157 5.54373 5.57058 5.73393 6.26139 6.34030 6.36925 6.48566 6.51008 6.65170 6.68721 6.76791 6.90357 6.91327 6.96484 7.17257 7.27281 7.34048 7.39372 7.49822 7.61224 7.80553 7.95284 8.25110 8.57712 8.95128 9.07611 9.71945 11.15908 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.032828 B = 0.014960 C = 0.013576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.736816 B = 1871.238243 C = 2062.005076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.076 3.924 3 C -0.470 4.470 4 H 0.060 0.940 5 C 0.058 3.942 6 N -0.898 5.898 7 Si 0.887 3.113 8 H -0.275 1.275 9 H -0.288 1.288 10 H -0.287 1.287 11 C 0.086 3.914 12 O -0.558 6.558 13 C -0.069 4.069 14 C -0.098 4.098 15 C -0.130 4.130 16 C -0.124 4.124 17 C -0.115 4.115 18 H 0.083 0.917 19 H 0.034 0.966 20 H 0.006 0.994 21 H 0.255 0.745 22 H -0.009 1.009 23 H 0.075 0.925 24 H 0.343 0.657 25 H 0.039 0.961 26 H 0.081 0.919 27 H 0.057 0.943 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.012 -4.384 -4.279 6.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.075 3.925 3 C -0.509 4.509 4 H 0.078 0.922 5 C -0.140 4.140 6 N -0.539 5.539 7 Si 0.716 3.284 8 H -0.200 1.200 9 H -0.215 1.215 10 H -0.214 1.214 11 C 0.008 3.992 12 O -0.359 6.359 13 C -0.088 4.088 14 C -0.136 4.136 15 C -0.168 4.168 16 C -0.161 4.161 17 C -0.152 4.152 18 H 0.101 0.899 19 H 0.053 0.947 20 H 0.025 0.975 21 H 0.066 0.934 22 H 0.009 0.991 23 H 0.093 0.907 24 H 0.185 0.815 25 H 0.057 0.943 26 H 0.100 0.900 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.831 -3.970 -4.707 6.424 hybrid contribution 0.329 0.601 0.599 0.910 sum 2.160 -3.369 -4.108 5.735 Atomic orbital electron populations 1.21769 0.97627 0.96970 1.02610 1.18099 0.91628 0.94271 0.88458 1.21070 1.29148 0.94457 1.06183 0.92210 1.24888 0.95303 0.98117 0.95725 1.69774 1.38081 1.35131 1.10929 0.86609 0.78445 0.85517 0.77811 1.19964 1.21454 1.21382 1.22429 0.79155 0.94409 1.03193 1.86665 1.21617 1.81139 1.46521 1.22009 0.95002 0.96410 0.95368 1.22324 0.96276 1.03168 0.91793 1.22255 0.96861 0.99334 0.98311 1.22144 0.96472 0.99461 0.98068 1.22411 0.96277 1.02090 0.94417 0.89859 0.94718 0.97520 0.93439 0.99084 0.90747 0.81463 0.94254 0.90011 0.92420 0.93565 0.93269 0.93411 0.93149 0.93556 0.90325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.02 37.15 0.30 -2.83 16 2 C 0.08 1.82 0.29 -155.66 -0.05 1.77 16 3 C -0.47 -12.42 5.75 -34.44 -0.20 -12.62 16 4 H 0.06 1.62 5.79 -52.49 -0.30 1.31 16 5 C 0.06 1.58 5.15 -17.82 -0.09 1.49 16 6 N -0.90 -24.68 9.35 55.43 0.52 -24.16 16 7 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 8 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 9 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 C 0.09 2.02 5.70 37.16 0.21 2.23 16 12 O -0.56 -12.37 10.24 -35.23 -0.36 -12.73 16 13 C -0.07 -1.49 2.25 -88.64 -0.20 -1.69 16 14 C -0.10 -2.03 4.49 -25.07 -0.11 -2.14 16 15 C -0.13 -2.28 6.80 -25.61 -0.17 -2.45 16 16 C -0.12 -2.12 6.80 -25.61 -0.17 -2.30 16 17 C -0.11 -2.26 5.02 -25.08 -0.13 -2.39 16 18 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 19 H 0.03 0.79 7.18 -51.93 -0.37 0.42 16 20 H 0.01 0.13 8.14 -51.93 -0.42 -0.30 16 21 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 22 H -0.01 -0.20 8.14 -51.93 -0.42 -0.62 16 23 H 0.07 1.93 6.07 -51.93 -0.32 1.62 16 24 H 0.34 6.00 9.12 45.56 0.42 6.42 16 25 H 0.04 0.83 8.14 -51.92 -0.42 0.41 16 26 H 0.08 1.91 5.97 -51.93 -0.31 1.60 16 27 H 0.06 1.19 6.96 -51.93 -0.36 0.83 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.86 8.00 -51.93 -0.42 0.45 16 33 H 0.08 1.70 6.52 -51.93 -0.34 1.36 16 LS Contribution 247.71 15.07 3.73 3.73 Total: -1.00 -27.66 247.71 -6.15 -33.82 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -4.41 Total: 3.81 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: -0.61 Total: -20.92 kcal Atomic # 7 Polarization: -24.68 SS G_CDS: 0.52 Total: -24.16 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -0.36 Total: -12.73 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -27.66 -6.15 -33.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261258953.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.471 kcal (2) G-P(sol) polarization free energy of solvation -27.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds