Wall clock time and date at job start Mon Mar 30 2020 02:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50706 * 109.47161 * 2 1 4 4 H 1.07999 * 120.00196 * 240.00130 * 3 2 1 5 5 C 1.37879 * 119.99394 * 60.00262 * 3 2 1 6 6 N 1.31514 * 120.00338 * 0.02562 * 5 3 2 7 7 Si 1.86800 * 119.99424 * 180.02562 * 5 3 2 8 8 H 1.48501 * 109.47363 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47233 * 120.00158 * 7 5 3 10 10 H 1.48508 * 109.46883 * 239.99963 * 7 5 3 11 11 C 1.52997 * 109.47482 * 120.00386 * 2 1 3 12 12 O 1.42898 * 109.47319 * 180.02562 * 11 2 1 13 13 C 1.52999 * 109.46961 * 240.00747 * 2 1 3 14 14 C 1.54885 * 110.75774 * 173.32855 * 13 2 1 15 15 C 1.54267 * 104.19594 * 203.73918 * 14 13 2 16 16 C 1.53874 * 106.60047 * 23.61012 * 15 14 13 17 17 C 1.54272 * 106.59635 * 359.97438 * 16 15 14 18 18 H 1.09001 * 109.47066 * 299.99783 * 1 2 3 19 19 H 1.08996 * 109.47747 * 59.99449 * 1 2 3 20 20 H 1.09002 * 109.47103 * 179.97438 * 1 2 3 21 21 H 0.96996 * 119.99730 * 179.97438 * 6 5 3 22 22 H 1.09002 * 109.47153 * 59.99783 * 11 2 1 23 23 H 1.09001 * 109.46832 * 299.99974 * 11 2 1 24 24 H 0.96701 * 113.99881 * 180.02562 * 12 11 2 25 25 H 1.09008 * 110.67026 * 296.76238 * 13 2 1 26 26 H 1.08998 * 110.48698 * 322.41655 * 14 13 2 27 27 H 1.09001 * 110.49052 * 85.06277 * 14 13 2 28 28 H 1.09001 * 110.03138 * 264.31815 * 15 14 13 29 29 H 1.09001 * 110.07251 * 142.91730 * 15 14 13 30 30 H 1.08996 * 110.02814 * 240.71715 * 16 15 14 31 31 H 1.08998 * 110.03331 * 119.28384 * 16 15 14 32 32 H 1.08992 * 110.48524 * 217.71051 * 17 16 15 33 33 H 1.09001 * 110.48219 * 95.07163 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 1 2.6532 1.7741 -0.8100 5 6 1.6992 2.2697 1.0342 6 7 0.9435 1.8394 2.0208 7 14 2.3213 4.0311 1.0338 8 1 3.1463 4.2645 -0.1786 9 1 1.1660 4.9641 1.0342 10 1 3.1466 4.2648 2.2461 11 6 2.0400 -0.7213 1.2491 12 8 3.4690 -0.7208 1.2494 13 6 2.0399 -0.7211 -1.2493 14 6 3.5791 -0.5944 -1.3664 15 6 3.8614 -0.7896 -2.8704 16 6 2.5650 -0.4207 -3.6126 17 6 1.5398 -0.0148 -2.5336 18 1 -0.3633 0.5138 0.8900 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 0.7095 2.4365 2.7485 22 1 1.6767 -1.7490 1.2491 23 1 1.6767 -0.2075 2.1392 24 1 3.8623 -1.1628 2.0142 25 1 1.7351 -1.7677 -1.2409 26 1 3.9064 0.3934 -1.0420 27 1 4.0715 -1.3716 -0.7819 28 1 4.1229 -1.8290 -3.0694 29 1 4.6725 -0.1338 -3.1870 30 1 2.1972 -1.2811 -4.1717 31 1 2.7466 0.4147 -4.2888 32 1 0.5442 -0.3686 -2.8011 33 1 1.5375 1.0666 -2.3973 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261258953.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:53 Heat of formation + Delta-G solvation = -87.162051 kcal Electronic energy + Delta-G solvation = -13840.308801 eV Core-core repulsion = 11671.461113 eV Total energy + Delta-G solvation = -2168.847688 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.88296 -37.03850 -35.27184 -32.80577 -29.35855 -28.21214 -27.05196 -26.24544 -21.94695 -20.76084 -20.42094 -17.69948 -17.53885 -16.91541 -16.24906 -15.67018 -14.85151 -14.51088 -14.07134 -13.77184 -13.63999 -13.01016 -12.79272 -12.76096 -12.45690 -12.33665 -12.01294 -11.78589 -11.61436 -11.43932 -11.05622 -10.95844 -10.75584 -10.43604 -10.26397 -10.10703 -7.90212 -5.98271 1.40465 1.44756 1.53254 2.51570 3.33550 3.98563 4.04806 4.10543 4.15139 4.64819 4.80550 4.84033 4.95371 4.99340 5.01981 5.06490 5.12978 5.18887 5.27906 5.33697 5.42443 5.52483 5.60538 5.69394 5.74629 5.81814 5.89441 6.05331 6.32682 6.60000 7.00174 7.36537 7.64690 9.09074 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.032828 B = 0.014960 C = 0.013576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.736816 B = 1871.238243 C = 2062.005076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.064 3.936 3 C -0.471 4.471 4 H 0.048 0.952 5 C 0.015 3.985 6 N -0.915 5.915 7 Si 0.935 3.065 8 H -0.275 1.275 9 H -0.286 1.286 10 H -0.290 1.290 11 C 0.093 3.907 12 O -0.568 6.568 13 C -0.071 4.071 14 C -0.094 4.094 15 C -0.125 4.125 16 C -0.118 4.118 17 C -0.114 4.114 18 H 0.057 0.943 19 H 0.033 0.967 20 H 0.024 0.976 21 H 0.253 0.747 22 H 0.007 0.993 23 H 0.047 0.953 24 H 0.364 0.636 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.491 -5.189 -5.552 7.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.064 3.936 3 C -0.509 4.509 4 H 0.066 0.934 5 C -0.181 4.181 6 N -0.557 5.557 7 Si 0.763 3.237 8 H -0.199 1.199 9 H -0.212 1.212 10 H -0.216 1.216 11 C 0.015 3.985 12 O -0.372 6.372 13 C -0.089 4.089 14 C -0.131 4.131 15 C -0.163 4.163 16 C -0.156 4.156 17 C -0.151 4.151 18 H 0.076 0.924 19 H 0.052 0.948 20 H 0.043 0.957 21 H 0.062 0.938 22 H 0.025 0.975 23 H 0.065 0.935 24 H 0.209 0.791 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.319 -4.780 -5.976 7.996 hybrid contribution 0.198 0.820 1.024 1.327 sum 2.517 -3.959 -4.953 6.822 Atomic orbital electron populations 1.21643 0.97615 0.97683 1.01267 1.18202 0.91748 0.93523 0.90131 1.21230 1.28402 0.95827 1.05448 0.93428 1.25441 0.95946 1.00834 0.95899 1.69900 1.38875 1.35707 1.11195 0.85864 0.77885 0.82524 0.77424 1.19942 1.21239 1.21620 1.22211 0.79827 0.94743 1.01748 1.86616 1.20893 1.81680 1.47979 1.21975 0.95606 0.96517 0.94847 1.22173 0.95621 1.01093 0.94216 1.22222 0.97431 1.00925 0.95728 1.22119 0.95250 1.00829 0.97391 1.22343 0.97770 1.00271 0.94729 0.92403 0.94755 0.95695 0.93756 0.97542 0.93511 0.79105 0.93473 0.93301 0.92657 0.91454 0.92466 0.91088 0.92070 0.92605 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.83 8.02 71.98 0.58 -5.25 16 2 C 0.06 3.06 0.29 -52.93 -0.02 3.04 16 3 C -0.47 -24.96 5.75 25.60 0.15 -24.81 16 4 H 0.05 2.60 5.79 -2.91 -0.02 2.58 16 5 C 0.02 0.83 5.15 84.66 0.44 1.27 16 6 N -0.91 -50.88 9.35 21.45 0.20 -50.67 16 7 Si 0.93 44.39 29.54 68.60 2.03 46.41 16 8 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 9 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 10 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 11 C 0.09 4.32 5.70 71.98 0.41 4.73 16 12 O -0.57 -24.70 10.24 -148.98 -1.53 -26.23 16 13 C -0.07 -2.93 2.25 -9.51 -0.02 -2.95 16 14 C -0.09 -3.72 4.49 31.67 0.14 -3.58 16 15 C -0.13 -4.02 6.80 31.32 0.21 -3.81 16 16 C -0.12 -3.67 6.80 31.32 0.21 -3.46 16 17 C -0.11 -4.28 5.02 31.66 0.16 -4.13 16 18 H 0.06 3.01 6.07 -2.39 -0.01 2.99 16 19 H 0.03 1.55 7.18 -2.39 -0.02 1.53 16 20 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 21 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 22 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 23 H 0.05 2.45 6.07 -2.39 -0.01 2.43 16 24 H 0.36 12.29 9.12 -74.06 -0.68 11.62 16 25 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 26 H 0.05 2.26 5.97 -2.39 -0.01 2.24 16 27 H 0.05 2.18 6.96 -2.39 -0.02 2.17 16 28 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.06 1.96 8.00 -2.39 -0.02 1.94 16 33 H 0.05 2.24 6.52 -2.39 -0.02 2.23 16 Total: -1.00 -57.79 247.71 3.37 -54.41 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 0.41 Total: 15.02 kcal Atomic # 6 Polarization: -41.21 SS G_CDS: 2.26 Total: -38.94 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: 0.20 Total: -50.67 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -1.53 Total: -26.23 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -57.79 3.37 -54.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261258953.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.748 kcal (2) G-P(sol) polarization free energy of solvation -57.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds