Wall clock time and date at job start Mon Mar 30 2020 02:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 114.00362 * 2 1 4 4 C 1.50698 * 108.79279 * 303.66246 * 3 2 1 5 5 H 1.08003 * 119.99560 * 126.56820 * 4 3 2 6 6 C 1.37873 * 120.00381 * 306.57417 * 4 3 2 7 7 N 1.31524 * 119.99707 * 6.04660 * 6 4 3 8 8 Si 1.86799 * 120.00357 * 186.04535 * 6 4 3 9 9 H 1.48502 * 109.46757 * 59.99740 * 8 6 4 10 10 H 1.48497 * 109.47214 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46956 * 300.00262 * 8 6 4 12 12 C 1.45547 * 108.89518 * 185.10948 * 3 2 1 13 13 C 1.54247 * 112.32364 * 301.22943 * 12 3 2 14 14 C 1.50556 * 108.48220 * 279.88124 * 13 12 3 15 15 C 1.54069 * 112.40865 * 94.27329 * 14 13 12 16 16 C 1.54060 * 112.81676 * 318.27210 * 15 14 13 17 17 C 1.50468 * 112.49884 * 318.29211 * 16 15 14 18 18 H 1.08998 * 109.47026 * 65.32139 * 1 2 3 19 19 H 1.08996 * 109.47652 * 185.32320 * 1 2 3 20 20 H 1.09003 * 109.46585 * 305.33023 * 1 2 3 21 21 H 0.96994 * 119.99655 * 180.02562 * 7 6 4 22 22 H 1.08995 * 108.89425 * 61.93305 * 12 3 2 23 23 H 1.08997 * 108.89497 * 180.53009 * 12 3 2 24 24 H 1.08994 * 109.62673 * 39.68482 * 13 12 3 25 25 H 1.09002 * 109.62689 * 160.26144 * 13 12 3 26 26 H 1.09001 * 108.92560 * 333.51424 * 14 13 12 27 27 H 1.08998 * 108.83329 * 214.96251 * 14 13 12 28 28 H 1.09007 * 108.80671 * 197.41656 * 15 14 13 29 29 H 1.09001 * 108.81306 * 79.14024 * 15 14 13 30 30 H 1.08999 * 108.87882 * 197.51149 * 16 15 14 31 31 H 1.08999 * 108.87586 * 79.06791 * 16 15 14 32 32 H 1.08996 * 109.62794 * 334.43767 * 17 16 15 33 33 H 1.09001 * 109.78888 * 213.95875 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.4853 2.0706 -1.1874 5 1 1.0316 3.0406 -1.0470 6 6 1.5842 1.5325 -2.4529 7 7 2.0267 0.3042 -2.6124 8 14 1.0897 2.5477 -3.9410 9 1 1.9275 3.7721 -4.0053 10 1 1.2892 1.7465 -5.1752 11 1 -0.3400 2.9317 -3.8251 12 6 3.4550 1.1781 -0.1226 13 6 4.0690 0.3462 1.0219 14 6 4.2040 1.2287 2.2342 15 6 2.9962 1.1114 3.1835 16 6 1.6506 1.0625 2.4350 17 6 1.5922 2.0383 1.2911 18 1 -0.3633 0.4291 -0.9338 19 1 -0.3634 -1.0232 0.0953 20 1 -0.3632 0.5943 0.8385 21 1 2.0966 -0.0743 -3.5027 22 1 3.6875 0.6972 -1.0727 23 1 3.8991 2.1734 -0.1131 24 1 3.4180 -0.4973 1.2516 25 1 5.0524 -0.0174 0.7235 26 1 4.2974 2.2647 1.9086 27 1 5.1069 0.9469 2.7758 28 1 2.9933 1.9692 3.8562 29 1 3.1021 0.2029 3.7764 30 1 0.8484 1.2926 3.1362 31 1 1.4992 0.0551 2.0472 32 1 2.2760 2.8657 1.4804 33 1 0.5769 2.4199 1.1831 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261261715.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:04 Heat of formation + Delta-G solvation = -59.239576 kcal Electronic energy + Delta-G solvation = -14044.740955 eV Core-core repulsion = 11877.104077 eV Total energy + Delta-G solvation = -2167.636879 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.73622 -34.90085 -32.55135 -31.05922 -30.09757 -25.61258 -25.30901 -23.55492 -22.35288 -18.94526 -18.34862 -16.64075 -15.27653 -14.61833 -14.31925 -13.83726 -13.70311 -13.04456 -12.54496 -12.11940 -11.88370 -11.60872 -11.16752 -11.03641 -10.88908 -10.59442 -10.40682 -10.35451 -9.88771 -9.71078 -9.53255 -9.39055 -9.08037 -8.57166 -8.40468 -7.66681 -5.89889 -4.08966 3.30800 3.36463 3.39122 4.42970 5.24479 5.50717 5.56257 5.60058 5.75481 6.04814 6.16665 6.29511 6.38510 6.47349 6.55819 6.58993 6.67727 6.71299 6.82730 6.94361 6.99763 7.04753 7.13242 7.24085 7.34284 7.49971 7.70531 7.85613 8.16085 8.37520 8.84885 9.22647 9.63152 11.08017 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047807 B = 0.013392 C = 0.012556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.544161 B = 2090.374585 C = 2229.532431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 O -0.365 6.365 3 C 0.242 3.758 4 C -0.559 4.559 5 H 0.052 0.948 6 C 0.080 3.920 7 N -0.851 5.851 8 Si 0.879 3.121 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.278 1.278 12 C -0.088 4.088 13 C -0.119 4.119 14 C -0.113 4.113 15 C -0.108 4.108 16 C -0.124 4.124 17 C -0.134 4.134 18 H 0.040 0.960 19 H 0.043 0.957 20 H 0.011 0.989 21 H 0.258 0.742 22 H 0.085 0.915 23 H 0.044 0.956 24 H 0.068 0.932 25 H 0.041 0.959 26 H 0.055 0.945 27 H 0.041 0.959 28 H 0.043 0.957 29 H 0.047 0.953 30 H 0.036 0.964 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.965 0.644 6.597 6.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.284 6.284 3 C 0.204 3.796 4 C -0.597 4.597 5 H 0.071 0.929 6 C -0.125 4.125 7 N -0.487 5.487 8 Si 0.707 3.293 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.204 1.204 12 C -0.125 4.125 13 C -0.157 4.157 14 C -0.151 4.151 15 C -0.146 4.146 16 C -0.161 4.161 17 C -0.172 4.172 18 H 0.058 0.942 19 H 0.062 0.938 20 H 0.030 0.970 21 H 0.068 0.932 22 H 0.104 0.896 23 H 0.062 0.938 24 H 0.087 0.913 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.132 0.323 6.461 6.568 hybrid contribution -0.543 0.914 -0.890 1.387 sum 0.589 1.236 5.571 5.737 Atomic orbital electron populations 1.22092 0.85077 0.97753 0.99014 1.87843 1.16599 1.30109 1.93852 1.17728 0.90774 0.81151 0.89981 1.21592 1.41672 1.04465 0.91963 0.92947 1.24981 0.94595 0.94460 0.98503 1.70095 1.43938 1.12660 1.21962 0.86884 0.79106 0.80617 0.82692 1.20250 1.21295 1.20368 1.20347 0.95504 0.97760 0.98935 1.21364 0.99513 0.99296 0.95485 1.21373 0.96374 1.00469 0.96856 1.21844 0.95433 0.99860 0.97464 1.21370 0.95046 1.02860 0.96854 1.21879 1.00354 0.98105 0.96868 0.94168 0.93842 0.97010 0.93196 0.89641 0.93759 0.91286 0.94008 0.92638 0.93973 0.93780 0.93465 0.94517 0.90121 0.93116 0.93251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.33 9.74 101.05 0.98 2.31 16 2 O -0.37 -9.20 6.55 -35.23 -0.23 -9.43 16 3 C 0.24 5.89 0.29 -94.64 -0.03 5.86 16 4 C -0.56 -15.02 6.59 -34.44 -0.23 -15.25 16 5 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 6 C 0.08 2.18 4.67 -17.82 -0.08 2.09 16 7 N -0.85 -23.92 10.95 55.43 0.61 -23.31 16 8 Si 0.88 20.99 29.54 -169.99 -5.02 15.97 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 C -0.09 -2.07 4.07 -29.59 -0.12 -2.19 16 13 C -0.12 -2.39 5.57 -27.30 -0.15 -2.54 16 14 C -0.11 -1.96 5.32 -27.39 -0.15 -2.11 16 15 C -0.11 -1.80 5.85 -25.62 -0.15 -1.95 16 16 C -0.12 -2.33 4.58 -27.44 -0.13 -2.46 16 17 C -0.13 -2.86 3.98 -27.35 -0.11 -2.97 16 18 H 0.04 1.00 6.89 -51.93 -0.36 0.65 16 19 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 20 H 0.01 0.24 6.15 -51.93 -0.32 -0.08 16 21 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 22 H 0.09 2.28 6.35 -51.93 -0.33 1.95 16 23 H 0.04 1.02 7.46 -51.93 -0.39 0.63 16 24 H 0.07 1.47 6.23 -51.93 -0.32 1.15 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.98 6.63 -51.93 -0.34 0.64 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.66 5.06 -51.93 -0.26 1.39 16 32 H 0.05 1.05 6.98 -51.93 -0.36 0.69 16 33 H 0.05 1.07 7.32 -51.93 -0.38 0.69 16 LS Contribution 242.99 15.07 3.66 3.66 Total: -1.00 -27.67 242.99 -6.28 -33.95 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -5.14 Total: -1.64 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: -0.16 Total: -19.20 kcal Atomic # 7 Polarization: -23.92 SS G_CDS: 0.61 Total: -23.31 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: -0.23 Total: -9.43 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -27.67 -6.28 -33.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261261715.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.286 kcal (2) G-P(sol) polarization free energy of solvation -27.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds