Wall clock time and date at job start Mon Mar 30 2020 02:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 114.00362 * 2 1 4 4 C 1.50698 * 108.79279 * 303.66246 * 3 2 1 5 5 H 1.08003 * 119.99560 * 126.56820 * 4 3 2 6 6 C 1.37873 * 120.00381 * 306.57417 * 4 3 2 7 7 N 1.31524 * 119.99707 * 6.04660 * 6 4 3 8 8 Si 1.86799 * 120.00357 * 186.04535 * 6 4 3 9 9 H 1.48502 * 109.46757 * 59.99740 * 8 6 4 10 10 H 1.48497 * 109.47214 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46956 * 300.00262 * 8 6 4 12 12 C 1.45547 * 108.89518 * 185.10948 * 3 2 1 13 13 C 1.54247 * 112.32364 * 301.22943 * 12 3 2 14 14 C 1.50556 * 108.48220 * 279.88124 * 13 12 3 15 15 C 1.54069 * 112.40865 * 94.27329 * 14 13 12 16 16 C 1.54060 * 112.81676 * 318.27210 * 15 14 13 17 17 C 1.50468 * 112.49884 * 318.29211 * 16 15 14 18 18 H 1.08998 * 109.47026 * 65.32139 * 1 2 3 19 19 H 1.08996 * 109.47652 * 185.32320 * 1 2 3 20 20 H 1.09003 * 109.46585 * 305.33023 * 1 2 3 21 21 H 0.96994 * 119.99655 * 180.02562 * 7 6 4 22 22 H 1.08995 * 108.89425 * 61.93305 * 12 3 2 23 23 H 1.08997 * 108.89497 * 180.53009 * 12 3 2 24 24 H 1.08994 * 109.62673 * 39.68482 * 13 12 3 25 25 H 1.09002 * 109.62689 * 160.26144 * 13 12 3 26 26 H 1.09001 * 108.92560 * 333.51424 * 14 13 12 27 27 H 1.08998 * 108.83329 * 214.96251 * 14 13 12 28 28 H 1.09007 * 108.80671 * 197.41656 * 15 14 13 29 29 H 1.09001 * 108.81306 * 79.14024 * 15 14 13 30 30 H 1.08999 * 108.87882 * 197.51149 * 16 15 14 31 31 H 1.08999 * 108.87586 * 79.06791 * 16 15 14 32 32 H 1.08996 * 109.62794 * 334.43767 * 17 16 15 33 33 H 1.09001 * 109.78888 * 213.95875 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.4853 2.0706 -1.1874 5 1 1.0316 3.0406 -1.0470 6 6 1.5842 1.5325 -2.4529 7 7 2.0267 0.3042 -2.6124 8 14 1.0897 2.5477 -3.9410 9 1 1.9275 3.7721 -4.0053 10 1 1.2892 1.7465 -5.1752 11 1 -0.3400 2.9317 -3.8251 12 6 3.4550 1.1781 -0.1226 13 6 4.0690 0.3462 1.0219 14 6 4.2040 1.2287 2.2342 15 6 2.9962 1.1114 3.1835 16 6 1.6506 1.0625 2.4350 17 6 1.5922 2.0383 1.2911 18 1 -0.3633 0.4291 -0.9338 19 1 -0.3634 -1.0232 0.0953 20 1 -0.3632 0.5943 0.8385 21 1 2.0966 -0.0743 -3.5027 22 1 3.6875 0.6972 -1.0727 23 1 3.8991 2.1734 -0.1131 24 1 3.4180 -0.4973 1.2516 25 1 5.0524 -0.0174 0.7235 26 1 4.2974 2.2647 1.9086 27 1 5.1069 0.9469 2.7758 28 1 2.9933 1.9692 3.8562 29 1 3.1021 0.2029 3.7764 30 1 0.8484 1.2926 3.1362 31 1 1.4992 0.0551 2.0472 32 1 2.2760 2.8657 1.4804 33 1 0.5769 2.4199 1.1831 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261261715.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:03 Heat of formation + Delta-G solvation = -74.673456 kcal Electronic energy + Delta-G solvation = -14045.410219 eV Core-core repulsion = 11877.104077 eV Total energy + Delta-G solvation = -2168.306142 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.49116 -36.57727 -34.55306 -32.72546 -31.85270 -27.51965 -27.11941 -25.17668 -24.09932 -20.73427 -19.86670 -18.63785 -17.09218 -16.43063 -16.03639 -15.64382 -15.47793 -14.66942 -14.19849 -13.83953 -13.57398 -13.36332 -12.96273 -12.78320 -12.69107 -12.45929 -12.23789 -12.13061 -11.51092 -11.33269 -11.12009 -10.99402 -10.83240 -10.44605 -10.44137 -9.59899 -7.96737 -6.21844 1.38899 1.40798 1.47111 2.42931 3.18772 3.84019 4.08091 4.14655 4.25473 4.51523 4.63887 4.72652 4.77891 4.86487 4.91544 5.00826 5.06793 5.11538 5.18341 5.30652 5.32706 5.48968 5.50516 5.57856 5.69659 5.73928 5.81219 5.85548 6.24086 6.37886 6.81177 7.27801 7.56346 8.99153 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047807 B = 0.013392 C = 0.012556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.544161 B = 2090.374585 C = 2229.532431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 O -0.381 6.381 3 C 0.234 3.766 4 C -0.574 4.574 5 H 0.043 0.957 6 C 0.039 3.961 7 N -0.876 5.876 8 Si 0.934 3.066 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.276 1.276 12 C -0.085 4.085 13 C -0.110 4.110 14 C -0.111 4.111 15 C -0.106 4.106 16 C -0.121 4.121 17 C -0.126 4.126 18 H 0.011 0.989 19 H 0.063 0.937 20 H 0.028 0.972 21 H 0.256 0.744 22 H 0.047 0.953 23 H 0.041 0.959 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.190 1.035 8.042 8.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 O -0.300 6.300 3 C 0.196 3.804 4 C -0.612 4.612 5 H 0.061 0.939 6 C -0.164 4.164 7 N -0.512 5.512 8 Si 0.760 3.240 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.201 1.201 12 C -0.123 4.123 13 C -0.147 4.147 14 C -0.149 4.149 15 C -0.143 4.143 16 C -0.158 4.158 17 C -0.164 4.164 18 H 0.030 0.970 19 H 0.082 0.918 20 H 0.046 0.954 21 H 0.065 0.935 22 H 0.066 0.934 23 H 0.060 0.940 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.353 0.723 7.913 8.060 hybrid contribution -0.633 0.794 -1.350 1.690 sum 0.720 1.517 6.562 6.774 Atomic orbital electron populations 1.22104 0.84203 0.99113 0.98137 1.87813 1.17638 1.30572 1.93973 1.17834 0.91016 0.80929 0.90645 1.21924 1.41516 1.04306 0.93446 0.93905 1.25573 0.94718 0.95281 1.00800 1.70217 1.44975 1.13874 1.22160 0.86019 0.78780 0.79344 0.79869 1.19858 1.21064 1.20096 1.20259 0.95584 0.97818 0.98673 1.21250 0.99251 0.98743 0.95476 1.21331 0.98178 0.99416 0.95951 1.21832 0.93447 1.01768 0.97297 1.21306 0.97414 1.00762 0.96356 1.21740 0.99670 0.98514 0.96460 0.97018 0.91829 0.95366 0.93498 0.93414 0.93990 0.92628 0.93048 0.93074 0.91137 0.91631 0.91744 0.92612 0.91924 0.92647 0.94245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.81 9.74 113.37 1.10 3.91 16 2 O -0.38 -19.23 6.55 -148.98 -0.98 -20.21 16 3 C 0.23 11.39 0.29 -13.40 0.00 11.39 16 4 C -0.57 -31.21 6.59 25.60 0.17 -31.04 16 5 H 0.04 2.34 7.74 -2.91 -0.02 2.32 16 6 C 0.04 2.17 4.67 84.65 0.40 2.56 16 7 N -0.88 -50.20 10.95 21.45 0.23 -49.96 16 8 Si 0.93 43.51 29.54 68.60 2.03 45.54 16 9 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 10 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 12 C -0.09 -4.05 4.07 28.74 0.12 -3.93 16 13 C -0.11 -4.25 5.57 30.23 0.17 -4.08 16 14 C -0.11 -3.52 5.32 30.16 0.16 -3.36 16 15 C -0.11 -3.13 5.85 31.31 0.18 -2.95 16 16 C -0.12 -4.25 4.58 30.13 0.14 -4.11 16 17 C -0.13 -5.22 3.98 30.19 0.12 -5.09 16 18 H 0.01 0.57 6.89 -2.39 -0.02 0.56 16 19 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 20 H 0.03 1.17 6.15 -2.39 -0.01 1.15 16 21 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 22 H 0.05 2.60 6.35 -2.39 -0.02 2.58 16 23 H 0.04 1.94 7.46 -2.39 -0.02 1.92 16 24 H 0.05 2.30 6.23 -2.39 -0.01 2.29 16 25 H 0.05 1.85 8.14 -2.39 -0.02 1.84 16 26 H 0.05 1.67 6.63 -2.39 -0.02 1.65 16 27 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.06 2.45 5.06 -2.39 -0.01 2.44 16 32 H 0.05 2.21 6.98 -2.39 -0.02 2.19 16 33 H 0.04 1.67 7.32 -2.39 -0.02 1.65 16 Total: -1.00 -58.87 242.99 4.91 -53.96 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: 1.07 Total: 7.37 kcal Atomic # 6 Polarization: -39.26 SS G_CDS: 2.55 Total: -36.70 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: 0.23 Total: -49.96 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.98 Total: -20.21 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -58.87 4.91 -53.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261261715.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.708 kcal (2) G-P(sol) polarization free energy of solvation -58.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds