Wall clock time and date at job start Mon Mar 30 2020 02:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 11 11 N 1.46899 * 109.47038 * 59.71978 * 9 7 2 12 12 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 13 13 N 1.46897 * 109.47242 * 185.00005 * 12 9 7 14 14 C 1.46846 * 110.99853 * 294.20763 * 13 12 9 15 15 C 1.53034 * 109.52260 * 174.16137 * 14 13 12 16 16 C 1.53121 * 109.28079 * 59.18051 * 15 14 13 17 17 C 1.53121 * 109.15736 * 302.34477 * 16 15 14 18 18 C 1.46846 * 110.99953 * 169.99927 * 13 12 9 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.00903 * 111.00048 * 60.00129 * 11 9 7 21 21 H 1.00904 * 110.99882 * 183.95319 * 11 9 7 22 22 H 1.09009 * 109.46866 * 305.00034 * 12 9 7 23 23 H 1.09003 * 109.47260 * 64.99350 * 12 9 7 24 24 H 1.09002 * 109.46411 * 294.17805 * 14 13 12 25 25 H 1.09000 * 109.45963 * 54.14574 * 14 13 12 26 26 H 1.08998 * 109.50228 * 299.23699 * 15 14 13 27 27 H 1.09001 * 109.50403 * 179.11827 * 15 14 13 28 28 H 1.09002 * 109.52357 * 182.44372 * 16 15 14 29 29 H 1.08993 * 109.52111 * 62.24638 * 16 15 14 30 30 H 1.08994 * 109.50468 * 297.71241 * 17 16 15 31 31 H 1.08997 * 109.50233 * 177.59450 * 17 16 15 32 32 H 1.09006 * 109.46463 * 305.85231 * 18 13 12 33 33 H 1.08995 * 109.46589 * 65.81949 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6242 -2.5609 0.8844 11 7 0.4065 -2.5716 -1.2052 12 6 2.2451 -3.6622 -0.0104 13 7 1.5146 -4.9303 -0.1369 14 6 0.6836 -5.1793 1.0480 15 6 -0.1702 -6.4288 0.8205 16 6 0.7466 -7.6264 0.5561 17 6 1.6350 -7.3218 -0.6532 18 6 2.4365 -6.0465 -0.3830 19 1 -0.4850 0.8401 -0.0004 20 1 0.9645 -2.5165 -2.0440 21 1 -0.1576 -3.4083 -1.2004 22 1 2.9293 -3.5515 -0.8518 23 1 2.8113 -3.6602 0.9210 24 1 1.3251 -5.3310 1.9161 25 1 0.0335 -4.3220 1.2223 26 1 -0.8219 -6.2726 -0.0392 27 1 -0.7753 -6.6223 1.7062 28 1 0.1419 -8.5097 0.3506 29 1 1.3713 -7.8069 1.4308 30 1 1.0118 -7.1797 -1.5361 31 1 2.3196 -8.1533 -0.8204 32 1 3.0596 -5.8190 -1.2480 33 1 3.0698 -6.1940 0.4918 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261270560.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:29 Heat of formation + Delta-G solvation = -8.899098 kcal Electronic energy + Delta-G solvation = -13191.691701 eV Core-core repulsion = 11058.530501 eV Total energy + Delta-G solvation = -2133.161200 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.64991 -34.93373 -32.45437 -30.85895 -30.40734 -26.76223 -24.98512 -22.89284 -22.49638 -19.74166 -19.22009 -16.55130 -15.28955 -14.73163 -14.42394 -14.23073 -13.93180 -13.72016 -13.18509 -12.86987 -12.21299 -12.08516 -11.66010 -11.61432 -10.96716 -10.86876 -10.62436 -10.55972 -10.39240 -10.15625 -10.04007 -9.46522 -8.87012 -8.31699 -7.78120 -6.68721 -5.77740 -3.92052 3.37146 3.45201 3.48075 4.40035 4.59583 5.02632 5.07788 5.12961 5.48123 5.48767 5.65460 5.78042 5.82660 5.92426 6.02263 6.08921 6.14939 6.26277 6.30978 6.43260 6.50340 6.57930 6.77872 6.86670 7.57768 7.60335 7.80209 7.99542 8.37682 8.86847 9.27404 9.41402 9.76486 11.26890 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.071664 B = 0.008225 C = 0.007876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.617451 B = 3403.327408 C = 3554.278404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.084 3.916 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.539 4.539 8 H 0.050 0.950 9 C 0.232 3.768 10 H 0.033 0.967 11 N -0.806 5.806 12 C 0.025 3.975 13 N -0.536 5.536 14 C 0.054 3.946 15 C -0.116 4.116 16 C -0.119 4.119 17 C -0.115 4.115 18 C 0.055 3.945 19 H 0.253 0.747 20 H 0.312 0.688 21 H 0.304 0.696 22 H 0.059 0.941 23 H 0.019 0.981 24 H 0.023 0.977 25 H 0.085 0.915 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.821 -12.543 0.468 12.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.123 4.123 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.578 4.578 8 H 0.068 0.932 9 C 0.121 3.879 10 H 0.051 0.949 11 N -0.331 5.331 12 C -0.105 4.105 13 N -0.261 5.261 14 C -0.074 4.074 15 C -0.154 4.154 16 C -0.157 4.157 17 C -0.153 4.153 18 C -0.073 4.073 19 H 0.063 0.937 20 H 0.122 0.878 21 H 0.115 0.885 22 H 0.078 0.922 23 H 0.037 0.963 24 H 0.041 0.959 25 H 0.103 0.897 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 0.997 -11.707 0.347 11.754 hybrid contribution 1.709 -0.006 0.502 1.782 sum 2.706 -11.713 0.849 12.051 Atomic orbital electron populations 1.70129 1.05621 1.25250 1.47140 1.24925 0.94580 0.98398 0.94370 0.86763 0.80213 0.84753 0.77434 1.20055 1.21094 1.21225 1.20974 0.92147 0.90565 1.54153 0.93209 1.18946 0.88705 0.89383 0.90836 0.94943 1.59134 1.27930 1.42155 1.03876 1.23273 0.98172 0.90201 0.98806 1.61959 1.23540 1.02444 1.38126 1.22097 0.96269 0.98300 0.90744 1.21588 0.97825 0.94286 1.01670 1.21566 0.98135 0.97925 0.98064 1.21568 0.98531 0.96461 0.98701 1.22040 0.94144 0.91487 0.99664 0.93711 0.87802 0.88548 0.92239 0.96293 0.95908 0.89681 0.91128 0.92122 0.92387 0.92756 0.91256 0.92356 0.91441 0.95881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.26 12.76 55.43 0.71 -24.55 16 2 C 0.08 2.39 5.39 -17.82 -0.10 2.29 16 3 Si 0.88 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.54 -15.15 8.73 -34.44 -0.30 -15.45 16 8 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 9 C 0.23 5.84 2.43 -68.87 -0.17 5.67 16 10 H 0.03 0.91 6.67 -51.93 -0.35 0.56 16 11 N -0.81 -19.72 8.48 -5.65 -0.05 -19.77 16 12 C 0.02 0.52 4.56 -3.83 -0.02 0.51 16 13 N -0.54 -9.57 3.89 -234.67 -0.91 -10.48 16 14 C 0.05 0.91 5.29 -3.84 -0.02 0.89 16 15 C -0.12 -1.60 6.09 -26.65 -0.16 -1.76 16 16 C -0.12 -1.45 6.00 -26.61 -0.16 -1.61 16 17 C -0.11 -1.45 6.09 -26.65 -0.16 -1.61 16 18 C 0.06 0.83 5.46 -3.83 -0.02 0.81 16 19 H 0.25 7.20 8.31 -40.82 -0.34 6.87 16 20 H 0.31 7.46 8.99 -39.29 -0.35 7.11 16 21 H 0.30 6.87 8.39 -39.29 -0.33 6.54 16 22 H 0.06 1.27 7.99 -51.92 -0.41 0.85 16 23 H 0.02 0.41 8.12 -51.93 -0.42 -0.01 16 24 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.08 1.64 6.32 -51.93 -0.33 1.31 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 1.01 8.02 -51.93 -0.42 0.59 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 261.71 15.07 3.94 3.94 Total: -1.00 -29.25 261.71 -7.97 -37.22 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -5.53 Total: 7.21 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -1.11 Total: -10.24 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.25 Total: -54.80 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.25 -7.97 -37.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261270560.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.320 kcal (2) G-P(sol) polarization free energy of solvation -29.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds