Wall clock time and date at job start Mon Mar 30 2020 02:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 11 11 N 1.46899 * 109.47038 * 59.71978 * 9 7 2 12 12 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 13 13 N 1.46897 * 109.47242 * 185.00005 * 12 9 7 14 14 C 1.46846 * 110.99853 * 294.20763 * 13 12 9 15 15 C 1.53034 * 109.52260 * 174.16137 * 14 13 12 16 16 C 1.53121 * 109.28079 * 59.18051 * 15 14 13 17 17 C 1.53121 * 109.15736 * 302.34477 * 16 15 14 18 18 C 1.46846 * 110.99953 * 169.99927 * 13 12 9 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.00903 * 111.00048 * 60.00129 * 11 9 7 21 21 H 1.00904 * 110.99882 * 183.95319 * 11 9 7 22 22 H 1.09009 * 109.46866 * 305.00034 * 12 9 7 23 23 H 1.09003 * 109.47260 * 64.99350 * 12 9 7 24 24 H 1.09002 * 109.46411 * 294.17805 * 14 13 12 25 25 H 1.09000 * 109.45963 * 54.14574 * 14 13 12 26 26 H 1.08998 * 109.50228 * 299.23699 * 15 14 13 27 27 H 1.09001 * 109.50403 * 179.11827 * 15 14 13 28 28 H 1.09002 * 109.52357 * 182.44372 * 16 15 14 29 29 H 1.08993 * 109.52111 * 62.24638 * 16 15 14 30 30 H 1.08994 * 109.50468 * 297.71241 * 17 16 15 31 31 H 1.08997 * 109.50233 * 177.59450 * 17 16 15 32 32 H 1.09006 * 109.46463 * 305.85231 * 18 13 12 33 33 H 1.08995 * 109.46589 * 65.81949 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6242 -2.5609 0.8844 11 7 0.4065 -2.5716 -1.2052 12 6 2.2451 -3.6622 -0.0104 13 7 1.5146 -4.9303 -0.1369 14 6 0.6836 -5.1793 1.0480 15 6 -0.1702 -6.4288 0.8205 16 6 0.7466 -7.6264 0.5561 17 6 1.6350 -7.3218 -0.6532 18 6 2.4365 -6.0465 -0.3830 19 1 -0.4850 0.8401 -0.0004 20 1 0.9645 -2.5165 -2.0440 21 1 -0.1576 -3.4083 -1.2004 22 1 2.9293 -3.5515 -0.8518 23 1 2.8113 -3.6602 0.9210 24 1 1.3251 -5.3310 1.9161 25 1 0.0335 -4.3220 1.2223 26 1 -0.8219 -6.2726 -0.0392 27 1 -0.7753 -6.6223 1.7062 28 1 0.1419 -8.5097 0.3506 29 1 1.3713 -7.8069 1.4308 30 1 1.0118 -7.1797 -1.5361 31 1 2.3196 -8.1533 -0.8204 32 1 3.0596 -5.8190 -1.2480 33 1 3.0698 -6.1940 0.4918 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261270560.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:29 Heat of formation + Delta-G solvation = -29.552258 kcal Electronic energy + Delta-G solvation = -13192.587290 eV Core-core repulsion = 11058.530501 eV Total energy + Delta-G solvation = -2134.056789 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.00309 -36.67959 -34.21277 -32.63092 -31.67652 -28.67055 -26.79406 -24.28678 -23.83487 -21.43263 -20.53056 -18.59262 -16.76442 -16.60061 -16.13729 -15.62142 -15.35108 -15.24048 -14.53717 -14.40044 -13.82920 -13.70739 -13.44485 -13.01978 -12.80246 -12.47862 -12.27583 -12.11447 -11.81036 -11.58130 -11.29004 -11.07180 -10.95993 -10.50366 -9.25629 -8.63469 -7.95282 -6.17381 1.42273 1.43925 1.54574 2.46779 3.05612 3.28911 3.92787 3.96258 4.06155 4.26641 4.41827 4.46955 4.56819 4.62147 4.67650 4.77673 4.92742 4.95305 5.02054 5.08975 5.10331 5.23831 5.31479 5.50232 5.61670 5.78148 6.04494 6.28051 6.33837 6.76919 7.24505 7.46541 7.55948 9.08465 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.071664 B = 0.008225 C = 0.007876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.617451 B = 3403.327408 C = 3554.278404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.033 3.967 3 Si 0.949 3.051 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.558 4.558 8 H 0.047 0.953 9 C 0.236 3.764 10 H -0.001 1.001 11 N -0.813 5.813 12 C 0.042 3.958 13 N -0.539 5.539 14 C 0.054 3.946 15 C -0.110 4.110 16 C -0.115 4.115 17 C -0.109 4.109 18 C 0.051 3.949 19 H 0.254 0.746 20 H 0.315 0.685 21 H 0.314 0.686 22 H 0.058 0.942 23 H 0.008 0.992 24 H 0.020 0.980 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.447 -13.740 0.169 13.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.170 4.170 3 Si 0.775 3.225 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.597 4.597 8 H 0.065 0.935 9 C 0.125 3.875 10 H 0.017 0.983 11 N -0.339 5.339 12 C -0.088 4.088 13 N -0.264 5.264 14 C -0.074 4.074 15 C -0.148 4.148 16 C -0.153 4.153 17 C -0.147 4.147 18 C -0.076 4.076 19 H 0.063 0.937 20 H 0.125 0.875 21 H 0.125 0.875 22 H 0.076 0.924 23 H 0.027 0.973 24 H 0.039 0.961 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 1.631 -12.925 0.049 13.027 hybrid contribution 1.507 0.328 0.613 1.660 sum 3.138 -12.596 0.661 12.998 Atomic orbital electron populations 1.70261 1.07105 1.26125 1.48142 1.25695 0.95431 1.01892 0.94004 0.85681 0.79037 0.80309 0.77467 1.19411 1.20728 1.20735 1.21364 0.92282 0.92159 1.53923 0.93506 1.18699 0.88833 0.90202 0.89758 0.98283 1.58978 1.28206 1.43019 1.03669 1.22847 0.96930 0.90834 0.98152 1.61920 1.23854 1.02104 1.38472 1.22085 0.96032 0.98825 0.90429 1.21563 0.97676 0.93363 1.02218 1.21565 0.97988 0.97730 0.98004 1.21560 0.98726 0.95647 0.98755 1.22175 0.94158 0.91569 0.99743 0.93720 0.87462 0.87458 0.92355 0.97341 0.96127 0.92880 0.91657 0.90572 0.89951 0.92279 0.91588 0.89741 0.91249 0.95792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -53.22 12.76 21.45 0.27 -52.94 16 2 C 0.03 1.90 5.39 84.66 0.46 2.36 16 3 Si 0.95 44.79 29.54 68.60 2.03 46.82 16 4 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 7 C -0.56 -31.77 8.73 25.60 0.22 -31.54 16 8 H 0.05 2.63 7.74 -2.91 -0.02 2.60 16 9 C 0.24 12.16 2.43 44.17 0.11 12.27 16 10 H 0.00 -0.04 6.67 -2.38 -0.02 -0.06 16 11 N -0.81 -40.32 8.48 -171.80 -1.46 -41.78 16 12 C 0.04 1.82 4.56 86.30 0.39 2.21 16 13 N -0.54 -19.02 3.89 -896.36 -3.49 -22.50 16 14 C 0.05 1.84 5.29 86.32 0.46 2.30 16 15 C -0.11 -2.85 6.09 30.65 0.19 -2.67 16 16 C -0.12 -2.43 6.00 30.68 0.18 -2.24 16 17 C -0.11 -2.43 6.09 30.65 0.19 -2.24 16 18 C 0.05 1.47 5.46 86.33 0.47 1.94 16 19 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 20 H 0.31 15.15 8.99 -89.69 -0.81 14.34 16 21 H 0.31 14.35 8.39 -89.69 -0.75 13.60 16 22 H 0.06 2.48 7.99 -2.38 -0.02 2.46 16 23 H 0.01 0.37 8.12 -2.39 -0.02 0.35 16 24 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.05 2.12 6.32 -2.39 -0.02 2.11 16 26 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.07 1.95 8.02 -2.38 -0.02 1.93 16 33 H 0.02 0.68 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -62.33 261.71 -0.45 -62.78 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: -0.47 Total: 25.25 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: 2.67 Total: -17.62 kcal Atomic # 7 Polarization: -112.55 SS G_CDS: -4.67 Total: -117.22 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -62.33 -0.45 -62.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261270560.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.228 kcal (2) G-P(sol) polarization free energy of solvation -62.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds